Csor.00g159340 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g159340
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr10: 7893417 .. 7895733 (-)
RNA-Seq Expression	Csor.00g159340
Synteny	Csor.00g159340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCGCGCACGGTTAGTTGTACTTGTTTGTTTTCACCGGCGTTGAATTTGAAGCCCTCGGCTTCAGGCTTGGTAGAACAGCAACCGGGTCTGGAACTCCGAGACAAAGCTAGAATAGGCACTGGGGTAAAGAGAATTAACCCCATCATGTATTCGTACCCTCTTGCTAGAACTTTGACAGATCCCCGGCCCTTCATTCACTAATGGTCTGCATGACTTTCTTTAGTAAGGTAAGGGTCTTATCACTGAACGGGATTGGGCAGAAGCACAGGCGAGAGGTAATCTGACCCCTTGTGTTTGTTTGATTTTTCTTTCGGCAAAACGAACCCAAAGAAAGGGCATAGGCGATCATTGGGATACCTTTTTTTCTTCTATACGCTACGCTCGCTATTTGGCTTGTCTTGTTAGGCCAGCCCGAAAGAAATCCCCGTCTCCAAGTCCTTCCTTTATAACTAATCCCCAGGTGCGAAGCGTGTGGGCAGTGCAGTAAAGGTTGCTAGCCTTCTCTCAGGGGCGTAGCCAATTAACATATTCTTATTCTTTTTCTCGAGAGAGACCGTGTGATCTTGGTTCCACGCGAATTCCATCCGGGAAATATAGCACAAATAAAGATCCGGAAGTAGTTTGGGAGGGAGTCTCTTTTTTCCACGTTATCGGAGAGCTATCATCGGGTAGAGCCCTGTTATCTCATTTTGGCCCTGTAGTAGATACTCTGACTCTCCCCTGCGCCTGCTATTATCAAATTCTCATCTACCTACTTCTCCTTCTTCTCCTTTCAAGAGGTATGGAGGGCTATCTTGTAGTTTAGCGTCAAGAAGCTAGGGGGCAAGCGTTGTACGGCAAATGACTTATCCATGTATGGTAAAGGTCAAGGGACTGCCTCCTGGAAGTGCTTTCTTCAAATAAATGAGAGTGCCCCTCAACAAGGTGTATGTAAAGTCAAGTACATTTGGTTACCGACCGAGGTGATCAATTGAGATTGACCTCTCTTTGAACTAAGTCATTCATTTTCCCACTCAAAGAAAGAGAACAGCAGAAGTCAGGGGTAGGAAATCAAGCAAAGCCATTCTTCAATTGTTGATAACAAGCCGTTCATCACTCCCTAGGTTTCTCGCGGAGCACCTTTGGGACATCCAATCATCGATAAGACCAGTAAGCATGCCTCTTGTTTGTTCAAAGCGGGATAATTCTCTCTCTTTTTGAATGGAAGAACTCCACCTCTGGCTACCGAAGGCCTTATTGTAGCAGCAGCTCCGTGAAAGACAGTCAGTCCTCTTACCTTGTTTAGCTATTTCAGGCATAGTTAGGAGGATGGTCTAAATCGTTGCTCAATCCTGGTCTTTCCCCTTCTAAGTAAGGAGTGCTCGCTTCTCTTTATCTTGTCTTTCTTAGCTTTCCTTTAAGCCCCCCAAGAACTCTCATCAATCATTCTTTACACAATCCATCTTCTTTGATTTCAGGCGTGAGGACAAGGATGGGAATTTGAGTTAGGATGGGCCAATCCCTTTGCTGAAAGGCTAGCTGTAGGCATCCATGGTCTCTCTCTCTGGTTTATATAGCTTGACTGACTGACCTTTGTTTATTTGAAAGTGGATCAATGTTTAGGGAATTGGGGCGAAAGCGGATTCTTTGCTCTAGCCACTAGACATACGGTTAGAGAAAGAGAATTAGATGGAGGGGGTTCTAAGGGTTAGGTTCATCAAGCAATGGTAGTAAGTCAAGCATGCTATCAAAGAAAAAGAGCAGGCCAGACAAGTGAATAAAGTGTATATTAACAACCTCCTTGCCACTACTTCGTTTACTCAATCATCATCTCTCGCTCGATATTCCCAGTGAGTCAAGCCCCTCTTCAGCCGGTCGGTACTTAGGAAGTCAGGAATGAAAGGGTAGAACCAGCTCTATCAAGAAAGAGAACAAGGAAGATGCTTCTAAATCATAGCATATAGAAAGACTCTGTTGGTCCTTGGGGGCCTCCCGGGTGAGTCGAGGTCTTATGGAAAGGTAGCTCGTTCAGTAACTTCCGGATGAGGTTCAAAATCAGTAGCCCTTCCTTCTGCTCCTAGTTTAGGAGCCAGCCTTATCTGATATGAAAGCATTTCTTTCGAGATAGCCAGCCAGGTGCGGGGCTAGAGCTAACCGTAGCAGTCTAAGGCCAAGGGGAAAAGCCTTGCAAAGAGGGCAAAGGGTACCAAGCAATCTAATCTCGCAAGCTTCAGTTTTCCAGTTCTTCATCCGATGTGAAGAAAAAGAAATACTAATCCTAGGTCAAGGCAGTAGCACGGTACGGGATCAGTCCCTTGTTCTCAGTGCTTAG

mRNA sequence

ATGTATTCGCGCACGGTTAGTTGTACTTGTTTGTTTTCACCGGCGTTGAATTTGAAGCCCTCGGCTTCAGGCTTGGTAGAACAGCAACCGGGTCTGGAACTCCGAGACAAAGCTAGAATAGGCACTGGGCCAGCCAGGTGCGGGGCTAGAGCTAACCGTAGCAGTCTAAGGCCAAGGGGAAAAGCCTTGCAAAGAGGGCAAAGGGTACCAAGCAATCTAATCTCGCAAGCTTCAGTTTTCCAGTTCTTCATCCGATGTGAAGAAAAAGAAATACTAATCCTAGGTCAAGGCAGTAGCACGGTACGGGATCAGTCCCTTGTTCTCAGTGCTTAG

Coding sequence (CDS)

ATGTATTCGCGCACGGTTAGTTGTACTTGTTTGTTTTCACCGGCGTTGAATTTGAAGCCCTCGGCTTCAGGCTTGGTAGAACAGCAACCGGGTCTGGAACTCCGAGACAAAGCTAGAATAGGCACTGGGCCAGCCAGGTGCGGGGCTAGAGCTAACCGTAGCAGTCTAAGGCCAAGGGGAAAAGCCTTGCAAAGAGGGCAAAGGGTACCAAGCAATCTAATCTCGCAAGCTTCAGTTTTCCAGTTCTTCATCCGATGTGAAGAAAAAGAAATACTAATCCTAGGTCAAGGCAGTAGCACGGTACGGGATCAGTCCCTTGTTCTCAGTGCTTAG

Protein sequence

MYSRTVSCTCLFSPALNLKPSASGLVEQQPGLELRDKARIGTGPARCGARANRSSLRPRGKALQRGQRVPSNLISQASVFQFFIRCEEKEILILGQGSSTVRDQSLVLSA

Homology

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BLAST of Csor.00g159340 vs. NCBI nr
Match: KAG6590351.1 (hypothetical protein SDJN03_15774, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (541), Expect = 2.76e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MYSRTVSCTCLFSPALNLKPSASGLVEQQPGLELRDKARIGTGPARCGARANRSSLRPRG 60
           MYSRTVSCTCLFSPALNLKPSASGLVEQQPGLELRDKARIGTGPARCGARANRSSLRPRG
Sbjct: 1   MYSRTVSCTCLFSPALNLKPSASGLVEQQPGLELRDKARIGTGPARCGARANRSSLRPRG 60

Query: 61  KALQRGQRVPSNLISQASVFQFFIRCEEKEILILGQGSSTVRDQSLVLSA 110
           KALQRGQRVPSNLISQASVFQFFIRCEEKEILILGQGSSTVRDQSLVLSA
Sbjct: 61  KALQRGQRVPSNLISQASVFQFFIRCEEKEILILGQGSSTVRDQSLVLSA 110

The following BLAST results are available for this feature:

BLAST of Csor.00g159340 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g159340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590351.1	2.76e-69	100.00	hypothetical protein SDJN03_15774, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g159340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g159340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g159340.m01	Csor.00g159340.m01	mRNA