Csor.00g159250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g159250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 7598614 .. 7598916 (-)
RNA-Seq Expression	Csor.00g159250
Synteny	Csor.00g159250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAATTTGTGGCCGAGTTCAAGAATAGTGAAGGATCAGAGAAAGAAGCCGATAGGCGAAGGAGCGAAGCAGAGGTGACGCTTTCTTCTTTTACCGAGTTCAATCTGGTTCAGGACTTGATTCGAGACTCCAGGCCAGGACAGAACGGAAGGAAGATGAATGAACCTATTTACCAAGTCTTTGAGAAGAAAAAGAATAAATCAAATAGGTGGGTGAAGGAAAGAACAGAAAAGAAAGAGACCGTAAAGGAAAAGGAGGTGACGGTGAGGGATCGGTTACGGAGCGAAGCGAAGCAATGA

mRNA sequence

ATGAATGAATTTGTGGCCGAGTTCAAGAATAGTGAAGGATCAGAGAAAGAAGCCGATAGGCGAAGGAGCGAAGCAGAGGTGACGCTTTCTTCTTTTACCGAGTTCAATCTGGTTCAGGACTTGATTCGAGACTCCAGGCCAGGACAGAACGGAAGGAAGATGAATGAACCTATTTACCAAGTCTTTGAGAAGAAAAAGAATAAATCAAATAGGTGGGTGAAGGAAAGAACAGAAAAGAAAGAGACCGTAAAGGAAAAGGAGGTGACGGTGAGGGATCGGTTACGGAGCGAAGCGAAGCAATGA

Coding sequence (CDS)

ATGAATGAATTTGTGGCCGAGTTCAAGAATAGTGAAGGATCAGAGAAAGAAGCCGATAGGCGAAGGAGCGAAGCAGAGGTGACGCTTTCTTCTTTTACCGAGTTCAATCTGGTTCAGGACTTGATTCGAGACTCCAGGCCAGGACAGAACGGAAGGAAGATGAATGAACCTATTTACCAAGTCTTTGAGAAGAAAAAGAATAAATCAAATAGGTGGGTGAAGGAAAGAACAGAAAAGAAAGAGACCGTAAAGGAAAAGGAGGTGACGGTGAGGGATCGGTTACGGAGCGAAGCGAAGCAATGA

Protein sequence

MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQVFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ

Homology

[Close]

BLAST of Csor.00g159250 vs. NCBI nr
Match: KAG6583630.1 (hypothetical protein SDJN03_19562, partial [Cucurbita argyrosperma subsp. sororia] >KAG6588534.1 hypothetical protein SDJN03_17099, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (472), Expect = 4.47e-59
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ 60
           MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ
Sbjct: 1   MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ 60

Query: 61  VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ 100
           VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ
Sbjct: 61  VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ 100

[Close]

BLAST of Csor.00g159250 vs. NCBI nr
Match: KAG6603418.1 (hypothetical protein SDJN03_04027, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173 bits (438), Expect = 6.87e-54
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MNEFVAEFKNSEGSEKEADRRRSEAEVTLSSFTEFNLVQDLIRDSRPGQNGRKMNEPIYQ 60
           MNE VAEFKNSE  EKEADRRRSEAEVT+SSFTEFNLV+DLIRDSRPGQNGRKMNEPIYQ
Sbjct: 1   MNELVAEFKNSEEEEKEADRRRSEAEVTVSSFTEFNLVKDLIRDSRPGQNGRKMNEPIYQ 60

Query: 61  VFEKKKNKSNRWVKERTEKKETVKEKEVTVRDRLRSEAKQ 100
           VFEKKKN SNRWVKERTEKKETVKEKEVTV+DRLRSEAKQ
Sbjct: 61  VFEKKKNNSNRWVKERTEKKETVKEKEVTVQDRLRSEAKQ 100

The following BLAST results are available for this feature:

BLAST of Csor.00g159250 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g159250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583630.1	4.47e-59	100.00	hypothetical protein SDJN03_19562, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603418.1	6.87e-54	93.00	hypothetical protein SDJN03_04027, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g159250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g159250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g159250.m01	Csor.00g159250.m01	mRNA