Csor.00g159160 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g159160
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr11: 7714426 .. 7716757 (+)
RNA-Seq ExpressionCsor.00g159160
SyntenyCsor.00g159160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAGTCCCCCCTATCACTGAAAGGCCGGCCGGAAGCAAGTTTGTCTTTACCAAACTCGGGACGCAAGGTGATTGTTGCGAAGACAGAATTTGGAACTTGTGTTATGAGCCTTACGAGCTAACCAAATGTTCTACTGATCTACTCCGCGGCAAAGGTAAGCATATGAACTAATCAGCGGACCAGAGGTTGTCTTGGCTAGTAAGAATAGTGTATTGTAAAAAGAGATAGATGTGAGATTCTTTCATTTGAGACCGATCGCGGATATCTTGATATATAGATAGATATAGAAAATTCTTTCTTTGAGAATAATCTCTTTTCTCTTTCTTTGATCACACTGGCTATCATCTATCATGCTGGAGCTTCAAGCTATTGGGAAAGGCAAATTCGCTTCTTTGAGAAAGCTTTTTCATAGGAATAGGAAGATCAGCTATTCATCCTTATCCTTAGGTTCGCCATCAGTTTTCATAGGATAAGTTCTAAGCCTTGGTCTTTTTTTTGTTCAATCAATTATTCAGCCAAGATTGACTCCGGCGGGGAAAGTATCTTGCTTGATCTTGATGTCGAAACTCGGATTGGTTAATTATCTGTTAGAGTGCTCAATTCTGGAGTCTCGAATCAACAAACGGATTGATTGTTCCGAACCTGCACGGTGCACCTTGTTTGAAGGCAGTAATTCGGGCTTGAGCTATAGTTTTCCATCTTCATGGTTGGAATACGGTAGTCCTGCGAAGATGACGCAAAGGGCTTGGCCGCCCAGAACAGAAGAGTTCCTTGGACATCGGATCAAGGGGACTATTTAAGCATGAATATGAATTCAGGGATGGGGAAGGCCGGAATGGGATCTCCAATCAAAGGTATCTGAGAGTGAAGATCTTTTCTTGGCCTGGGAAACTACGTAGGTTCATTTTCGGGTCCTTTGACTAATCTCCAGAAGAACCGACACCATGGCATTGGACTAGAGAAGATCAAGAGGCCTTTGAGGACTTAGAAAGTCAAGGGGGCATCATGGCTGATCCGGTCTTGGCCTTTCAGGATCATGCTAAGCTGGTCGAAGTACGATGCTTCAGACTATGCCATCGGTGTTATGCAAGGAAAGAGAGAGAGAGAGAGAGGGCAGCCAATCGCCTAGAAGAAAGAGCCGTAAGATCAATGAGACCGAAAGGACACAGTACAAGAAAAGGGCCGCCATAGTGCACTGTCTACGCACCTAAACACAGAATAAGCTCAGCCGGTAAAAAAGAATTAGTAAAGAAAGGATCAAATTACAGATCGTAGGAAGATTTATAGATAACGGGGCATATTCATGCTATTAATATTAATTAGATTACCACGTCTGATTAGATCATTAGATAAGAAATCACATAAAAGGTTGAAACTTTTCTTGTCTTCTTTATGCTTTCTAGTTTGATTTTGATATTCTCAAATAAATCTCTTATTTCTCGATCACTATATATTGAGATTTTCTTTGGTTCATTCTTTGACTCTCCGCTACCCCCAGAACAGAAGGAAGAGACAGAGTAGAGTGAATCCATTTTTCTATTTAAGGATAAGGAGTAGGCGAGGGCTCCACTTGCATTCTTCGCCAATTCAAAATCAATCACCGGCTGGGTTAGTCCAACCAAAAAAGAAATGGGAATTTGAGGCGTCAGATTCTTATTCTGATCTGACGTACGATTCGATATTTCGAGTTAGAGATAAAAGAGCCCAAGACGCGTCCAGATAAGCATATACATATAGTTTGTTGTGATCCTCAAGTTCAATCAAGTCGTTGTAGCCGCCTAGGGCAATCTTGCTCAGAAGTTCATAGGTCAGGTCGAATCCCGTGCTTGGACTTGGGCACGAAACGATAGCTATTAGCTATTACTTGTGCATCGTTAAGAGTTATGGCTGACGGCTTTCGGGGAAGGGAATTACTGACTCTCTCTAGAAAGAGTGAACTGCCTTACTGGGTAGTGGATAAAAGCACTTGATTCTCCTTCTTTCTTACTAGACTGGAATCTCAATCAATAATCAGGATTGGCACCTTTCTCAAGCGTCAGCTTTTATTTACTTATCCTTTCTCATAGGACAGTAAGAGTCTTTAACCCATTAGTAAGGTGCGGAGCAGAAGCCCGCGAGAGGAATTCGATACGCATGCATACATAACATACTTTCTATCTATTTTCTTCATCAGAAGTGAAAGTGAGATAGAGTCTGGTGGTATCTCGTATAGAAGAATCAGGCTAAGGCAGCTTTTTGGGAGTGAACAAAGTAGAGATGTTCTAGGGTGCAAATTCAATGGGTGCCGGGGGGAAAGAGGAGCAGCCTTTGAAGTTTTCAGGCAATGA

mRNA sequence

ATGAGTGAGTCCCCCCTATCACTGAAAGGCCGGCCGGAAGCAAGTTTGTCTTTACCAAACTCGGGACGCAAGTCCTGCGAAGATGACGCAAAGGGCTTGGCCGCCCAGAACAGAAGAGTTCCTTGGACATCGGATCAAGGGGACTATTTAAGCATGAATATGAATTCAGGGATGGGGAAGGCCGGAATGGGATCTCCAATCAAAGAAGAACCGACACCATGGCATTGGACTAGAGAAGATCAAGAGGCCTTTGAGGACTTAGAAAGTCAAGGGGGCATCATGGCTGATCCGGTCTTGGCCTTTCAGGATCATGCTAAGCTGGTCGAAACTGGAATCTCAATCAATAATCAGGATTGGCACCTTTCTCAAGCGTCAGCTTTTATTTACTTATCCTTTCTCATAGGACAAAGTGAAAGTGAGATAGAGTCTGGTGGTATCTCGTATAGAAGAATCAGGCTAAGGCAGCTTTTTGGGAGTGAACAAAGTAGAGATGTTCTAGGGTGCAAATTCAATGGGTGCCGGGGGGAAAGAGGAGCAGCCTTTGAAGTTTTCAGGCAATGA

Coding sequence (CDS)

ATGAGTGAGTCCCCCCTATCACTGAAAGGCCGGCCGGAAGCAAGTTTGTCTTTACCAAACTCGGGACGCAAGTCCTGCGAAGATGACGCAAAGGGCTTGGCCGCCCAGAACAGAAGAGTTCCTTGGACATCGGATCAAGGGGACTATTTAAGCATGAATATGAATTCAGGGATGGGGAAGGCCGGAATGGGATCTCCAATCAAAGAAGAACCGACACCATGGCATTGGACTAGAGAAGATCAAGAGGCCTTTGAGGACTTAGAAAGTCAAGGGGGCATCATGGCTGATCCGGTCTTGGCCTTTCAGGATCATGCTAAGCTGGTCGAAACTGGAATCTCAATCAATAATCAGGATTGGCACCTTTCTCAAGCGTCAGCTTTTATTTACTTATCCTTTCTCATAGGACAAAGTGAAAGTGAGATAGAGTCTGGTGGTATCTCGTATAGAAGAATCAGGCTAAGGCAGCTTTTTGGGAGTGAACAAAGTAGAGATGTTCTAGGGTGCAAATTCAATGGGTGCCGGGGGGAAAGAGGAGCAGCCTTTGAAGTTTTCAGGCAATGA

Protein sequence

MSESPLSLKGRPEASLSLPNSGRKSCEDDAKGLAAQNRRVPWTSDQGDYLSMNMNSGMGKAGMGSPIKEEPTPWHWTREDQEAFEDLESQGGIMADPVLAFQDHAKLVETGISINNQDWHLSQASAFIYLSFLIGQSESEIESGGISYRRIRLRQLFGSEQSRDVLGCKFNGCRGERGAAFEVFRQ
Homology
[Close]
BLAST of Csor.00g159160 vs. NCBI nr
Match: KAG6588542.1 (hypothetical protein SDJN03_17107, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380 bits (976), Expect = 3.77e-133
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 

Query: 1   MSESPLSLKGRPEASLSLPNSGRKSCEDDAKGLAAQNRRVPWTSDQGDYLSMNMNSGMGK 60
           MSESPLSLKGRPEASLSLPNSGRKSCEDDAKGLAAQNRRVPWTSDQGDYLSMNMNSGMGK
Sbjct: 1   MSESPLSLKGRPEASLSLPNSGRKSCEDDAKGLAAQNRRVPWTSDQGDYLSMNMNSGMGK 60

Query: 61  AGMGSPIKEEPTPWHWTREDQEAFEDLESQGGIMADPVLAFQDHAKLVETGISINNQDWH 120
           AGMGSPIKEEPTPWHWTREDQEAFEDLESQGGIMADPVLAFQDHAKLVETGISINNQDWH
Sbjct: 61  AGMGSPIKEEPTPWHWTREDQEAFEDLESQGGIMADPVLAFQDHAKLVETGISINNQDWH 120

Query: 121 LSQASAFIYLSFLIGQSESEIESGGISYRRIRLRQLFGSEQSRDVLGCKFNGCRGERGAA 180
           LSQASAFIYLSFLIGQSESEIESGGISYRRIRLRQLFGSEQSRDVLGCKFNGCRGERGAA
Sbjct: 121 LSQASAFIYLSFLIGQSESEIESGGISYRRIRLRQLFGSEQSRDVLGCKFNGCRGERGAA 180

Query: 181 FEVFRQ 186
           FEVFRQ
Sbjct: 181 FEVFRQ 186

[Close]
BLAST of Csor.00g159160 vs. NCBI nr
Match: KAG6585914.1 (hypothetical protein SDJN03_18647, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 6.21e-07
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 25  SCEDDAKGLAAQNRRVPWTSDQ---GDYLSMNMNSGMGKAGMGSPIKE 69
           SCED AKGLAA  R   +   +    DYLSMNMNSGMGKA MGSPIKE
Sbjct: 57  SCEDLAKGLAAAPRTEEFLGHRIKGRDYLSMNMNSGMGKARMGSPIKE 104

[Close]
BLAST of Csor.00g159160 vs. NCBI nr
Match: KAG6583632.1 (hypothetical protein SDJN03_19564, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.1 bits (126), Expect = 2.28e-05
Identity = 41/98 (41.84%), Postives = 47/98 (47.96%), Query Frame = 0 

Query: 1  MSESPLSLKGRPEASLSLPNSGRK------------------SCEDD----------AKG 60
          MSESPLSLKG  EASLSLPNSG +                   C  +          +KG
Sbjct: 1  MSESPLSLKGWLEASLSLPNSGLEVIVAKTEFGTCVMSLTSTKCSTNLLRGKFLRRFSKG 60

Query: 61 LA--AQNRRVPWTSDQGDYL---SMNMNSGMGKAGMGS 65
          L   AQNRRVPWTSDQG  L         G G+ G+ +
Sbjct: 61 LGRCAQNRRVPWTSDQGKGLFKHEYEFRDGEGRNGISN 98

The following BLAST results are available for this feature:
BLAST of Csor.00g159160 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g159160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6588542.13.77e-133100.00hypothetical protein SDJN03_17107, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585914.16.21e-0766.67hypothetical protein SDJN03_18647, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583632.12.28e-0541.84hypothetical protein SDJN03_19564, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g159160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g159160 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g159160.m01Csor.00g159160.m01mRNA