Csor.00g157670 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g157670
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 9626011 .. 9628015 (-)
RNA-Seq ExpressionCsor.00g157670
SyntenyCsor.00g157670
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTAGAAGTTCTCAGCTCAAGTCTTTCCATGTTCATCATGGTGTTCATTCCTCAGATAACTATGGAGGTTACGTTTCCGACTCTATGCTCGTGACTCGAAGACACCGTAAAAGCCATAGATCTCACGTAACGTTCAGTGAGGACATCAACGAGATATCCGATGTGAATGAAGCTTCTAGACGCTGCCGTACCGAGAACATCGACGATGTGGCTGAGGAGTTCATTAGGCTGAAACACAACCAGATGTGTATGGACTCTTAACTGAAAGAAACTGTGGCTTCTGATTCTGTATGATTATCATATCAGGTGTAGCTTAGTTACTGAATTATAGCCCAATAATGTTTTGATGCTCCTGAGCTGCTTGCACTTGTATGTGAACATTTCAAAGTTCCAACGAAATAAAACGGACTGTACCAAGTCGTATTTATCAATTTCTTTACGGTATTAATTTCTGTTGATTTGATTCATTATTTTGTCACGATTTCGTTATGATCCTAATGAAGTTTCAAATATGTCGGAATGTCTGTGAGATCCCACATCGGTTTAAGATTAGAAGCATGTGAAAATCTCTTTCTAGCATTTTAAAACTTTGAGGGGAAGCCCGAAAGAGAAAACCCATAGGGATAGAGGTGGACTTGGACTGTTAGAAATGATATCAGAGCCGGATATTGGGCGATGTGACAACAAGAAGGCTGAGTCCTAAAGGGGATGGACACGAGGTGAGCTCGGAAGGAAAACCCCAAAGAAAATATATGCTAGCGGTGAGTTTGGACTGTTACAAATGGTATCAAGCCAAACGCCGGGCGATGTGACAACGAGGAGGCTGAGCCCTGATGGAGAGTGGACACGAGACGATGAGTCAGCAAGGACATTGGGAACCGAAGGGGGGGTGAATTGGAGGCTATCACATCGATAGGAGAGAAGGGAACAAGTGCCAATGAGGTTACTTCTTTATAAGGGTGTGAAAACCTCTCTCCCTAGCAGACACAAAACATTCTTTATAAGGGTGTAAAAATATCTCCCAACGGCTCCAAATTAGAGACTACTTCTCTCAATAATCCTCAACAATCCTCCCCTCGAACAAAGTACACCATAGAGCCTCTCCTAAGACCTCCTCTAAAGCTCTGGAACAGTCTCTCCTTAATCGATGCTCAACTCCTTTTCTAAAGCCCCTAAACAAAATACACCATTTATTCGATACTTGAGTCACCTTTAACTACACCTTCAAACCTCACAACTCCTTTGTTCGACTTAGGATTCTATTGACCGAACTAAGTTAAGGGTATGACTTTAATACCATGTTAGACATCACAACTCTCCATGATGGTAGGATATTGTCCACTTTGAGCACAAACTCGCATAATCTCATACGAATAGTGATGGAGATAATACTCCTTTACTTACCCATGATCTTCCTCTAGCCAATGCCGGACTACTTCTCTCAATAATTCTAATTCGTTTCAGCCGGAAGCTCAATAAAACAGTAAATCATTCATACCCTTCAGCTCAAACAGCAAGAAAAAGAACAGAACACAAAAATTTCCTTAAAAAAGTTGCGTTCTATTGAATGGAGCGACAGAGAGGGCAAGTAACATGCTGATTATCAAACCATTTAGAAAGACAACATTTATGAAAAAAATGCTTACAAGACAACTCACTAACTTCCTCGTCAGCTTCAAATCCACACAGACAAACAGAGCACTCTGCCACAGAACACCTCGAAACAGAGCAATTATCAGTCTCTGTTCCGCCATTGAAGCTTTGGCGTAAGGATTTGAAATGGGTAATGGAGATTCTTCTTCCTCTTCCACTCTCCTGTTCATATTCATCCGCAGAACTCGAGGGGTTGGCGCTCATCATTTGTAGCACAGATCTCACCAAGTTCTTCAAGAAAGCCATCGACATGACTGTGTTCATCACTAGAACTGGTAACAGCAACACTCCTTCAGCTGACGGGTGGAAATTTGAGAGACCCATCTTCAAAAATCCTAAAAAATGA

mRNA sequence

ATGTCTTTTAGAAGTTCTCAGCTCAAGTCTTTCCATGTTCATCATGGTGTTCATTCCTCAGATAACTATGGAGGTTACGTTTCCGACTCTATGCTCGTGACTCGAAGACACCGTAAAAGCCATAGATCTCACGTAACGTTCAGTGAGGACATCAACGAGATATCCGATGTGAATGAAGCTTCTAGACGCTGCCGTACCGAGAACATCGACGATGTGGCTGAGGAGTTCATTAGGCTGAAACACAACCAGATGTCTTCAAATCCACACAGACAAACAGAGCACTCTGCCACAGAACACCTCGAAACAGAGCAATTATCAGTCTCTGTTCCGCCATTGAAGCTTTGGCGTAAGGATTTGAAATGGGTAATGGAGATTCTTCTTCCTCTTCCACTCTCCTGTTCATATTCATCCGCAGAACTCGAGGGGTTGGCGCTCATCATTTGTAGCACAGATCTCACCAAGTTCTTCAAGAAAGCCATCGACATGACTGTGTTCATCACTAGAACTGGTAACAGCAACACTCCTTCAGCTGACGGGTGGAAATTTGAGAGACCCATCTTCAAAAATCCTAAAAAATGA

Coding sequence (CDS)

ATGTCTTTTAGAAGTTCTCAGCTCAAGTCTTTCCATGTTCATCATGGTGTTCATTCCTCAGATAACTATGGAGGTTACGTTTCCGACTCTATGCTCGTGACTCGAAGACACCGTAAAAGCCATAGATCTCACGTAACGTTCAGTGAGGACATCAACGAGATATCCGATGTGAATGAAGCTTCTAGACGCTGCCGTACCGAGAACATCGACGATGTGGCTGAGGAGTTCATTAGGCTGAAACACAACCAGATGTCTTCAAATCCACACAGACAAACAGAGCACTCTGCCACAGAACACCTCGAAACAGAGCAATTATCAGTCTCTGTTCCGCCATTGAAGCTTTGGCGTAAGGATTTGAAATGGGTAATGGAGATTCTTCTTCCTCTTCCACTCTCCTGTTCATATTCATCCGCAGAACTCGAGGGGTTGGCGCTCATCATTTGTAGCACAGATCTCACCAAGTTCTTCAAGAAAGCCATCGACATGACTGTGTTCATCACTAGAACTGGTAACAGCAACACTCCTTCAGCTGACGGGTGGAAATTTGAGAGACCCATCTTCAAAAATCCTAAAAAATGA

Protein sequence

MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEASRRCRTENIDDVAEEFIRLKHNQMSSNPHRQTEHSATEHLETEQLSVSVPPLKLWRKDLKWVMEILLPLPLSCSYSSAELEGLALIICSTDLTKFFKKAIDMTVFITRTGNSNTPSADGWKFERPIFKNPKK
Homology
BLAST of Csor.00g157670 vs. NCBI nr
Match: KAG6573703.1 (hypothetical protein SDJN03_27590, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382 bits (981), Expect = 1.03e-133
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0

Query: 1   MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEA 60
           MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEA
Sbjct: 1   MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEA 60

Query: 61  SRRCRTENIDDVAEEFIRLKHNQMSSNPHRQTEHSATEHLETEQLSVSVPPLKLWRKDLK 120
           SRRCRTENIDDVAEEFIRLKHNQMSSNPHRQTEHSATEHLETEQLSVSVPPLKLWRKDLK
Sbjct: 61  SRRCRTENIDDVAEEFIRLKHNQMSSNPHRQTEHSATEHLETEQLSVSVPPLKLWRKDLK 120

Query: 121 WVMEILLPLPLSCSYSSAELEGLALIICSTDLTKFFKKAIDMTVFITRTGNSNTPSADGW 180
           WVMEILLPLPLSCSYSSAELEGLALIICSTDLTKFFKKAIDMTVFITRTGNSNTPSADGW
Sbjct: 121 WVMEILLPLPLSCSYSSAELEGLALIICSTDLTKFFKKAIDMTVFITRTGNSNTPSADGW 180

Query: 181 KFERPIFKNPKK 192
           KFERPIFKNPKK
Sbjct: 181 KFERPIFKNPKK 192

BLAST of Csor.00g157670 vs. NCBI nr
Match: KAA0034268.1 (hypothetical protein E6C27_scaffold65G002670 [Cucumis melo var. makuwa] >TYK15652.1 hypothetical protein E5676_scaffold35G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.48e-19
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDIN-EISDVNE 60
          MS R+SQLK F+V  G  SSD+YGGY+SDS+L TR+H K+ + HVTFS++ N E+ DV++
Sbjct: 1  MSSRNSQLK-FNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHK 60

Query: 61 ASRRCR----TENIDDVAEEFIRLKHNQMS 85
           S+       T +I+D AEEFIRLKHNQMS
Sbjct: 61 TSKHRHAHFYTNDINDEAEEFIRLKHNQMS 89

BLAST of Csor.00g157670 vs. ExPASy TrEMBL
Match: A0A0A0KQ47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598070 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.64e-22
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 1  MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDINEISDVNEA 60
          MSFR+S+LK F+V HG HSSD+YGGY+SDS+L TR++ K+ + HVTFS   N++SDV++ 
Sbjct: 1  MSFRNSKLK-FNVDHGTHSSDDYGGYISDSVLETRKYHKNQKPHVTFSYGNNKVSDVHKT 60

Query: 61 SRRCR----TENIDDVAEEFIRLKHNQMS 85
          S+       T++I+D AEEFIRLK NQMS
Sbjct: 61 SKHHHAHFYTDDINDEAEEFIRLKQNQMS 88

BLAST of Csor.00g157670 vs. ExPASy TrEMBL
Match: A0A5A7SUE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001490 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.69e-19
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0

Query: 1  MSFRSSQLKSFHVHHGVHSSDNYGGYVSDSMLVTRRHRKSHRSHVTFSEDIN-EISDVNE 60
          MS R+SQLK F+V  G  SSD+YGGY+SDS+L TR+H K+ + HVTFS++ N E+ DV++
Sbjct: 1  MSSRNSQLK-FNVDRGTPSSDDYGGYISDSVLETRKHHKNQKPHVTFSDNNNNEVPDVHK 60

Query: 61 ASRRCR----TENIDDVAEEFIRLKHNQMS 85
           S+       T +I+D AEEFIRLKHNQMS
Sbjct: 61 TSKHRHAHFYTNDINDEAEEFIRLKHNQMS 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573703.11.03e-133100.00hypothetical protein SDJN03_27590, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0034268.13.48e-1956.67hypothetical protein E6C27_scaffold65G002670 [Cucumis melo var. makuwa] >TYK1565... [more]
Match NameE-valueIdentityDescription
A0A0A0KQ474.64e-2257.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598070 PE=4 SV=1[more]
A0A5A7SUE31.69e-1956.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g157670.m01Csor.00g157670.m01mRNA