Csor.00g156850 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g156850
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 7544517 .. 7545709 (-)
RNA-Seq ExpressionCsor.00g156850
SyntenyCsor.00g156850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGAGACATGAATGTACGAATCCTGTAGAGGAGCATTACTCTGCTCAAACCCTTCATCTTCTTTCTTTATCTGTATGGTTTATGACTGTTAATATCATAGGAGGAGAATATAAGAATTACATGACATTCTCTTTTATCACTAACCCTTCTCTTTATCCTGTTTGATGGGAAGTTTGTGTACTTCTTGAACACTAAAAATGAAGGCAGTTTATTTTGGAGGAATGAAAATACTTTTGATGGGGGGAGGGTTTAGTTTTAGAACCTGAATTCAAATAGCCAGATTATATTCTGATTAATGTGTTCTTCATGGCATTGTCATGTTCCAATTAGAAATTGAGGATCAAGTTCATACCTTAGTCTTAGAGTTTTTGGATTTGATTCAGGTTGGTATATATACTCTTAAAATATTTACTTTTATCCATGTCAAAATGGTCACTTTTAAAAAATACCGAGATCAAACGAACATTTTGGAAGTAGAGAGACCAACATAAACATTTTAGAGGTACACGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAAGAACCTGAAAATAGTGCTCTTGCTCGTCTCTCCCCTACTTATTGATTAGGGAAAGTCACTCAAATCCCTTGGCACTTGTTCCTCTTTTCTTTTACAAAAATTCCAGAGTTTATGCGTTTTTCGGAAACTCAAGTAGCTTGTCAAGCTAAAATCAAAGAGTTCCCTCACTTCGAAAGATATGTAGTAGATGGCATACTGATAGATCTCCTATTTGTTCGATCTATAGGTAAAAACTCGGCTAATTTCATTGAACAAAATGATAAACTACTAAAACTCCTGAAATTATTGATCTAAAAAGTTGTCTAATTGAAGTTGTTTGAGCCTGTATGATGGGAAGTTTCTGTTGTTCATATTATTTGTGTTTGGTCATTCTTCTGTTTTCTTAGGTCAATGTCAGGCTGAAGAGCTTCAAGATAAAGAGGGAAAATCAAAGGGAAATCAGATTCCCATTTGAACAAACTCTTCTCTATTCAATAATTCAGGTCCCCCACTGCTTACCCAACTGGTTATAATGTTACATCTTCAAATCTGTGGTTGCTATTGCAAGATAACCTTGTTTTGTCTCCACTTTTGCCTCCTTCACATGTATGATTATGATCTTTTGTATGTGAACGACGATGACTTGTCGCATACTGTTCCGTTCTAA

mRNA sequence

ATGGACAGAGACATGAATGTCAATGTCAGGCTGAAGAGCTTCAAGATAAAGAGGGAAAATCAAAGGGAAATCAGATTCCCATTTGAACAAACTCTTCTCTATTCAATAATTCAGATAACCTTGTTTTGTCTCCACTTTTGCCTCCTTCACATGTATGATTATGATCTTTTGTATGTGAACGACGATGACTTGTCGCATACTGTTCCGTTCTAA

Coding sequence (CDS)

ATGGACAGAGACATGAATGTCAATGTCAGGCTGAAGAGCTTCAAGATAAAGAGGGAAAATCAAAGGGAAATCAGATTCCCATTTGAACAAACTCTTCTCTATTCAATAATTCAGATAACCTTGTTTTGTCTCCACTTTTGCCTCCTTCACATGTATGATTATGATCTTTTGTATGTGAACGACGATGACTTGTCGCATACTGTTCCGTTCTAA

Protein sequence

MDRDMNVNVRLKSFKIKRENQREIRFPFEQTLLYSIIQITLFCLHFCLLHMYDYDLLYVNDDDLSHTVPF
Homology
[Close]
BLAST of Csor.00g156850 vs. NCBI nr
Match: KAG6571845.1 (hypothetical protein SDJN03_28573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143 bits (360), Expect = 6.43e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDRDMNVNVRLKSFKIKRENQREIRFPFEQTLLYSIIQITLFCLHFCLLHMYDYDLLYVN 60
          MDRDMNVNVRLKSFKIKRENQREIRFPFEQTLLYSIIQITLFCLHFCLLHMYDYDLLYVN
Sbjct: 1  MDRDMNVNVRLKSFKIKRENQREIRFPFEQTLLYSIIQITLFCLHFCLLHMYDYDLLYVN 60

Query: 61 DDDLSHTVPF 70
          DDDLSHTVPF
Sbjct: 61 DDDLSHTVPF 70

[Close]
BLAST of Csor.00g156850 vs. NCBI nr
Match: KAG6606241.1 (hypothetical protein SDJN03_03558, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 5.85e-08
Identity = 36/82 (43.90%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 11  LKSFKIKRENQREIRFPFEQTLLYSIIQI----------------------TLFCLHFCL 70
           L+  + + ENQ +IRFP++ TL  SIIQ+                       LFCLHF  
Sbjct: 25  LEELQAEEENQWKIRFPYQLTLCCSIIQVPHSFLQIVIMLDLQNCGAYCKLALFCLHFSP 84

The following BLAST results are available for this feature:
BLAST of Csor.00g156850 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g156850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571845.16.43e-43100.00hypothetical protein SDJN03_28573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6606241.15.85e-0843.90hypothetical protein SDJN03_03558, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g156850 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g156850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g156850.m01Csor.00g156850.m01mRNA