Csor.00g156840 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g156840
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LOL1-like
Location	Csor_Chr19: 7541476 .. 7542797 (+)
RNA-Seq Expression	Csor.00g156840
Synteny	Csor.00g156840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCTGCACCTTATTCACAGCCTGCTAATGGTATTCACTCTGTTTCAAAGCTTTACATTATTGTTTGGTTGTTGAGGAATTGATTTGGTTTGTGTGAGATCCCACGTCGGCCTGGGGAGGAGAACGGAGCACCCTTTATTATAAGGGCGTGTAAACCTCTCCCTAGTAGACGCGTTTTAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGGCTTGGGCCGTTACAGTTTGCCATTTTTCAACTCTCTAAGTGGGAAGTCTATTGATTTTCCCATTCAATGGACCTCAGCCCCACTGTTTGAGGTAGCATATCCATAGCCAAATTGGTTATGAGAAACCCTGCAAGAATGGCTCAAGTTTTCAGGCTTAGTTTGGATTTTCTATGTGTTTGTGTGTGTTTTCATAGATCAGTGCTTGAAATGTGGATTTTGTTGGTCATTAGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGTATATCTGTTCTTCCTCTTCTTTTTCACCATCTGCAAGAAATATTGCAAGTGTTAGTTGCTTTATGCTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGGTATGGAAATCTAACTAGTTTCAAGAGTGATTCTACAAATCTTGGTAAATTTCTTTCCTAGCCAGCTCCCATCATGAATATCAGCATTCTCTGTTCACTAAGAACATATATTCGAATCCGTTCTTCTAATGATTGTTTGGGGATGCAAACCTTGGTGTTTTAAGGCACGACTCCTGTGCATTAAGCGTCGAATGTATACGTTACAGCAAATCAGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTGTAAGTATAAAACTTTCATTCCATTGAATTACTGTTAGTTTCATCAGTTTAAGCATCATCTGAAAGCTCAGAACACCAACAGAGCTCTGATAGTTATATATTTCCATCGTCGTTTCTTACTCAAATCTGAAGAGAATCCGTCCATTCTAGTAGTACCTCACACTATTAATGTCTTTCGTTGTAGATGACAACAAGTGCGATCGATCAAAAAGCTTAA

mRNA sequence

ATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCTGCACCTTATTCACAGCCTGCTAATGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCAAATCAGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTATGACAACAAGTGCGATCGATCAAAAAGCTTAA

Coding sequence (CDS)

ATGCCACCGGTTCCTCTTGCACCATATCCAACACCTCCTGCACCTTATTCACAGCCTGCTAATGCCACACAGAGCCAGCTTGTGTGCTCAGGATGTAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTCACTGCCGTTCCACCTCCTGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGCGGTGCCACGAGCGTACAATGCTCTTGTTGCCACACCGTCAACTTAGCTTTGGAAGCAAATCAGGTGGCACACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAGTATGGAGCACGCTCAGTGAAATGTGCAGTATGCAATTTTGTGACATCAATTGGTATGACAACAAGTGCGATCGATCAAAAAGCTTAA

Protein sequence

MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSAIDQKA

Homology

[Close]

BLAST of Csor.00g156840 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.7e-66
Identity = 127/150 (84.67%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 3   PVPLAPYPTPPAP------YSQPANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP       + PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSIGMTTSAIDQK 144
           MYQYGARSVKCAVCNFVTS+G +TS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of Csor.00g156840 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.1e-64
Identity = 120/141 (85.11%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P++ P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTE
Sbjct: 43  PVPLAPYPTPPVPFT-PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSIGMTTSAIDQK 144
           KCAVCNFVTS+G  +   DQK
Sbjct: 163 KCAVCNFVTSVG-ASPGTDQK 181

[Close]

BLAST of Csor.00g156840 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-39
Identity = 74/115 (64.35%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTT 138
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ GM T
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116

[Close]

BLAST of Csor.00g156840 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.7e-39
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSA 140
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ GM T A
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA 119

[Close]

BLAST of Csor.00g156840 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.8e-35
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of Csor.00g156840 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296 bits (758), Expect = 2.75e-101
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTSIGMTTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 292 bits (747), Expect = 1.31e-99
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. NCBI nr
Match: XP_022972004.1 (protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbita maxima])

HSP 1 Score: 291 bits (746), Expect = 1.93e-99
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 144
           RSVKCAVCNFVTSIGMTTSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of Csor.00g156840 vs. NCBI nr
Match: XP_008465951.1 (PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465953.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465954.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_016903577.1 PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 289 bits (739), Expect = 2.18e-98
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. NCBI nr
Match: XP_038887483.1 (protein LOL1 isoform X2 [Benincasa hispida])

HSP 1 Score: 288 bits (738), Expect = 3.09e-98
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PY+QPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTS+GM+TS IDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSTIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 1.33e-101
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTSIGMTTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 292 bits (747), Expect = 6.34e-100
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. ExPASy TrEMBL
Match: A0A6J1I7B6 (protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1)

HSP 1 Score: 291 bits (746), Expect = 9.33e-100
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 144
           RSVKCAVCNFVTSIGMTTSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of Csor.00g156840 vs. ExPASy TrEMBL
Match: A0A1S3CQ35 (protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1)

HSP 1 Score: 289 bits (739), Expect = 1.05e-98
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of Csor.00g156840 vs. ExPASy TrEMBL
Match: A0A6J1ET02 (protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1)

HSP 1 Score: 285 bits (729), Expect = 3.53e-97
Identity = 136/144 (94.44%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PY+ PAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144
           SVKCAVCNFVTS+GM+TSA+DQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAVDQKA 144

[Close]

BLAST of Csor.00g156840 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-67
Identity = 127/150 (84.67%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 3   PVPLAPYPTPPAP------YSQPANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP       + PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSIGMTTSAIDQK 144
           MYQYGARSVKCAVCNFVTS+G +TS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of Csor.00g156840 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-67
Identity = 127/150 (84.67%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 3   PVPLAPYPTPPAP------YSQPANAT---QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP       + PAN +   QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSIGMTTSAIDQK 144
           MYQYGARSVKCAVCNFVTS+G +TS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of Csor.00g156840 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 233.4 bits (594), Expect = 1.1e-61
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 83
           QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124

Query: 84  VQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSIGMTTSAIDQK 143
           VQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTS+G +TS  D K
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTSTTDSK 184

[Close]

BLAST of Csor.00g156840 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of Csor.00g156840 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of Csor.00g156840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB1	5.7e-66	84.67	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	4.1e-64	85.11	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q2QMB3	2.6e-39	64.35	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	7.7e-39	63.56	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	8.8e-35	56.25	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of Csor.00g156840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952054.1	2.75e-101	100.00	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]
XP_004148490.1	1.31e-99	97.22	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
XP_022972004.1	1.93e-99	99.31	protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbit...	[more]
XP_008465951.1	2.18e-98	96.53	PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [...	[more]
XP_038887483.1	3.09e-98	95.83	protein LOL1 isoform X2 [Benincasa hispida]	[more]

BLAST of Csor.00g156840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKN9	1.33e-101	100.00	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A0A0LEE4	6.34e-100	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A6J1I7B6	9.33e-100	99.31	protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1	[more]
A0A1S3CQ35	1.05e-98	96.53	protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1	[more]
A0A6J1ET02	3.53e-97	94.44	protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1	[more]

BLAST of Csor.00g156840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	4.0e-67	84.67	lsd one like 1	[more]
AT1G32540.3	4.0e-67	84.67	lsd one like 1	[more]
AT1G32540.1	1.1e-61	92.50	lsd one like 1	[more]
AT4G20380.2	6.3e-36	56.25	LSD1 zinc finger family protein	[more]
AT4G20380.1	6.3e-36	56.25	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 106..130 e-value: 8.3E-13 score: 47.9 coord: 68..92 e-value: 1.5E-12 score: 47.1 coord: 29..53 e-value: 8.6E-11 score: 41.5
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 65..94 e-value: 8.6E-15 score: 52.1 coord: 26..56 e-value: 9.7E-13 score: 45.5 coord: 103..132 e-value: 1.7E-11 score: 41.5
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 3..141
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..141
IPR036280	Multiheme cytochrome superfamily	SUPERFAMILY	48695	Multiheme cytochromes	coord: 29..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g156840.m01	Csor.00g156840.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus