Csor.00g156520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g156520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr19: 7113557 .. 7113949 (+)
RNA-Seq Expression	Csor.00g156520
Synteny	Csor.00g156520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGTCACGTGCGGTCTCACTTGTCGAATTCCAAATCAATGCCGATGTCGATGCCGAAGCCAATACCGATGATCAACCACGATCGTCCACATTCAACTCTCATCATTGGAGAGCGACGGTCGAAGCAGCACAAAGATGAGCATCGACACAAGGAAGCAGAGATGTCGATGGAGGATTCGGAAGCGGCCTTGTGTCTTCTAATGATGAGAAGAGACGGAAGAAAGGGAGTGAAGGAGGAGAATGCAAGTCATAAGAGAATGAACAGTTATAATGGTTATTGTAGATTACCAAAAGCTTTGGTAGATCTCAACCGTCCATCTTCCTATGGTTCTTCTGATTATGATGATGACGATGAAGATGATGAACAAATTTGTCGAAATGAATTTTAG

mRNA sequence

ATGAGCGGTCACGTGCGGTCTCACTTGTCGAATTCCAAATCAATGCCGATGTCGATGCCGAAGCCAATACCGATGATCAACCACGATCGTCCACATTCAACTCTCATCATTGGAGAGCGACGGTCGAAGCAGCACAAAGATGAGCATCGACACAAGGAAGCAGAGATGTCGATGGAGGATTCGGAAGCGGCCTTGTGTCTTCTAATGATGAGAAGAGACGGAAGAAAGGGAGTGAAGGAGGAGAATGCAAGTCATAAGAGAATGAACAGTTATAATGGTTATTGTAGATTACCAAAAGCTTTGGTAGATCTCAACCGTCCATCTTCCTATGGTTCTTCTGATTATGATGATGACGATGAAGATGATGAACAAATTTGTCGAAATGAATTTTAG

Coding sequence (CDS)

ATGAGCGGTCACGTGCGGTCTCACTTGTCGAATTCCAAATCAATGCCGATGTCGATGCCGAAGCCAATACCGATGATCAACCACGATCGTCCACATTCAACTCTCATCATTGGAGAGCGACGGTCGAAGCAGCACAAAGATGAGCATCGACACAAGGAAGCAGAGATGTCGATGGAGGATTCGGAAGCGGCCTTGTGTCTTCTAATGATGAGAAGAGACGGAAGAAAGGGAGTGAAGGAGGAGAATGCAAGTCATAAGAGAATGAACAGTTATAATGGTTATTGTAGATTACCAAAAGCTTTGGTAGATCTCAACCGTCCATCTTCCTATGGTTCTTCTGATTATGATGATGACGATGAAGATGATGAACAAATTTGTCGAAATGAATTTTAG

Protein sequence

MSGHVRSHLSNSKSMPMSMPKPIPMINHDRPHSTLIIGERRSKQHKDEHRHKEAEMSMEDSEAALCLLMMRRDGRKGVKEENASHKRMNSYNGYCRLPKALVDLNRPSSYGSSDYDDDDEDDEQICRNEF

Homology

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BLAST of Csor.00g156520 vs. NCBI nr
Match: KAG6571812.1 (hypothetical protein SDJN03_28540, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (668), Expect = 5.15e-88
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MSGHVRSHLSNSKSMPMSMPKPIPMINHDRPHSTLIIGERRSKQHKDEHRHKEAEMSMED 60
           MSGHVRSHLSNSKSMPMSMPKPIPMINHDRPHSTLIIGERRSKQHKDEHRHKEAEMSMED
Sbjct: 1   MSGHVRSHLSNSKSMPMSMPKPIPMINHDRPHSTLIIGERRSKQHKDEHRHKEAEMSMED 60

Query: 61  SEAALCLLMMRRDGRKGVKEENASHKRMNSYNGYCRLPKALVDLNRPSSYGSSDYDDDDE 120
           SEAALCLLMMRRDGRKGVKEENASHKRMNSYNGYCRLPKALVDLNRPSSYGSSDYDDDDE
Sbjct: 61  SEAALCLLMMRRDGRKGVKEENASHKRMNSYNGYCRLPKALVDLNRPSSYGSSDYDDDDE 120

Query: 121 DDEQICRNEF 130
           DDEQICRNEF
Sbjct: 121 DDEQICRNEF 130

The following BLAST results are available for this feature:

BLAST of Csor.00g156520 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g156520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571812.1	5.15e-88	100.00	hypothetical protein SDJN03_28540, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g156520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g156520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g156520.m01	Csor.00g156520.m01	mRNA