Csor.00g155510 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g155510
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transcription initiation factor IIB
Location	Csor_Chr03: 541377 .. 545902 (-)
RNA-Seq Expression	Csor.00g155510
Synteny	Csor.00g155510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATGCGTTCTGCTCTGACTGTAAGCGTCAGACGGAGGTTGTTTTCGACCATTCCGCCGGAGATACTGTGTGTTCCGAGTGCGGCCTTGTGCTTGAGTCGCACTCCATTGATGAGACCTCCGAGTGGAGGACTTTTGCCAACGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCGACGAATCCGCTTTTGGCTGATGGTGGCCTCTCGACCGTGATTGCCAAGCCTAATGGTACGTCTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGGTCTAATCCAGATCGAGGGCTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTAAGGGGGTTGGATGTTTTAGTGGTGGTTTGGATGCTGAGGAAGAGTGGAATTTGTTGGATTTCTCTGGATCTTGATTTCGTTTCCTTAGCCTTGTGCCGTTAAACAGATCGAATTGGGATTATGGCGGGGTCGGAATTGGGAAATCTGACTAGTTTGAGGATTTTTATGTTCGTGGGAGAAATTTTAACGATGGATACAAATTTTGGGAACAGATTGTTTGGGATTCGGGTTATGCAGCAGGAACTAGTTGGCGAACTTTCTGTAATTTAGGGAAGCGTTTCTTTCTTTCTTGGAAAAATAAGTCGAGGACAAGTGATCTTACCTTGTTTACGGATTCACTTATCAGAAGTTAGGAACTTATATGTTGAGCTAAGAAGTCCTATAAATGAAAACTCGATCTGGGTATTTCTTTTGGGGGGGAGAATATTGAATTAAAACCTATCCCTTTACTGCATAGATGCGCCGCTATGTGATCGAGCTGAATTTTGTAAAATGGTTCTTCACATCTGGAAAACTTGCTTGTGAGACAAAGCTTTGGAGTTGAACTTTCTTTTGTAGCTTTTGCTTTCTTTCTTCAATTTCCTGGCAAGCAACTTTGTAGATGGAGTGGAATATCTTAATTCAGAGCTCAATTAGGTCGATATAGCTTGTTGCTTTGGAGTTTCAAGGTCTTTTTTGTATTCATTTTGGGTGGAGCCACTTCTCTAATTGGGTTTTAAACAGTGAATAAACTTGAATGTTTACTCCTTCCATCCAGTGTTTGATGTATTTTTTAAATTATTGCTCTTGACACAAGATGATTATGGATCTGGGTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTCCGTATTTTCGTTCAGTTTATGGTGTTTTTGTACTGATTAGAATTTTTATTCGGCTGCTTGTTCTAAGCGTCCCAACTTTGAGTTATGTAATTTGAGATTGATTTATAATGTTCAATGAAGTTATGAGTTTGCATATCTTTGGAAGATTATTGAGTCCCATGGCTACTATGATTTTGGTGCGATTACTTTTGAGACTATTTTTAAGAAGTGCCACATTTAGAAAGACCATAGATAACTAATGCAGCTTTATTGTGTTTCAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTCCATCCATTATGACATAATACCACAAGTTTCTATTTCTTGTATTTTCTCAAAGCATTCAGGTTACTTGTCAATATAGAATGATCATGCAGTATTCTGAAGGTTGGAATAATGTATGTTTCATAGTTCTTGTTAAACGTTTATTCGGGAAGTGATGCACAATGCATGGGTCAATTTGGAATTGTTGGATACGTACGGTGCACATATATAGATAAGAAACAAGACTTTCCTTATAAAAAAGGAGGTTACAAAGGGTGGGAGATGAGGTTTCCCCACTTAGCTAAGGGGCTACAAAAACGCTTTCCTATTGGCATAAATTTGAAGAAAAGAGTAATTACACATATTATCAAAGAAAGAAGTGCAAGCCCTGAAAATAAGATTCAAGTCCTTATGAATTGTGAGATAGAAGCATAGAATAGAAAGTAACCAGAAAATTGTATAATTTCTAAAGCCCTTCCCTATTTCTAACCAAGAACATGCTTGCCTAGACTCAATGGTTGAATCACTTGGGACAGTGGTTTATTCGTGTAGCGTCATGACTAAAATTTTGTTTTGAGCTTCATTTCTGTAGTAACAAAATGCATATTAAAGGGTCTAAAATGCTGTTGAGGGGGTTGAAAACAGCAAATGGGAGAGGAATTTGTGGAGCATTAGCAAGAGAATAATGAGGAAACAGAATAAGGAAGTTGGATAGTGGGTGAGAGTGAATTCATTTATAACTTTGAAGAATTCTTTAAGAACACACTATTGCTGTGATAAAGAATCGTCTGTTGTAGATTTTGTGCAAACATTATATCTTCTTGGGTGTCTATGACAAAGATATTTTGTAATTGTTATATGTTGCGATTGTACTGGGTATCGTTGCTAAAGACGTATTTGTAGAGGCTTTTGCCGCTTTTTCTTGGCTCTTTATTGTTTCAAACATTTTTTTTGTGGGTATTGCCCAGCTGTATATACTTGTGTTCTGTCCGTGAATGAATAGTTTTTCATTAAAAAATTTTGTTTCCTATTAAAAGAGGTTATTCAATATATACCTGTAGTATATGATTTGAAGATCGGCTTGGTTTTAGATTTTGCTTTCGAGTGTCGTTCATCATTTCTCTAGAAAGTGACCTTTGATATTTTGTAAATGTTTATCTTCAATGAGTTTCAAATTTATTAATTATATATAGGATCGAGCCAATGAAATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAGCCCCGCACGGTCAAGGGTATTTTCTTATATATCATTGATATCTGGAACATTTGTAGTTTAATTTCTATTCTTACCTAATCATGCTGATTTTGAGTAGAAATTTGCTCCGTTGCCAATGGGGCAACAAAGAAGGAGATTGGCCGAGCAAAGGAATATATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTGGAGATGGGAACGATACACGCCGGAGACTTCATGGTGAGTTTTTGGGTGAAAGAACTCATGTTGATTTTTTGAACTTTGATCATGGACAATATGTCGTTTTTTTCTGACGTCAATTTTTTTTTCCGAATGAATATAGAGGCGTTTTTGTTCTAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTCGATATTAGGTAAAATTCGTTTCCTCTGGTTGTTGTGACGTAATCTGTAAGCGTTTATGTTCGACAAAATCCATCCTGAAAGCATCCTCTTCTGGTCTGTCAGTAGTAGCTGACCATATCCTCGACTACGAGCATATGGTTGAATGTTACAGTTTAATATGTCCTTGCTTTCCATGCTGCCGCACCGCAGTATTGGTATCCACTGGTTGATTTCTTTGTCCTTGCTTTCCTTGCTTTCCTTGCTTTCCTCTCTCCCACATGGGTTGGAGAGAGGAACGAAACATTTCTTATAAGGACGTGGAAACCACCTCTCCCTAATAGACACGTGAATAGGCCAAAACGGACAGTATCGGCTAATGATGGGTTTGGGCTGTTACATATGGCTTTTTTGCCTATGCTCGTAACCACTTCATTCTGAGGTTGAGGTCAACGCCCACTTTTGTCAAATTAAAAGAATAGGATGTTTTTTTAAGATAGAAAACAAAAAAGCTACCATAAGTCAACTGTATTTTTCTTCATCTTATACTGTAATTCATTCTTCCCAGACACTTTTGAGGAGGAACCCTATTTTTTCGTAGGACTGGAATTTATTCTGGTTGACTTTTTGATTGAGAGTATTTTCTTCCCTCTTTTCAGGAGGAGCCCTATTTCCATTGCAGCAGCAGTTATTTACATTATCACTCAGCTTTCGGATGATAAGAAGCCTCTGAAAGGTAATGTTAGCTGCCATTAAAGCTTCACTTCATCATTTAAGTTTAGAACTATGATCATAATCTGAGGTGATTCACGCTATTCTTATCTGCAAAATCATGTTTGTTAGCGATTCCGTTAACTGTTTCTGGAATTTTTGGTTTTCCAACTAGAGATGTCCATTTTACCCGTGGGGACTTGCTGGGGAGTGGGGAGGGAATTGGGAGCTTTTTTTTCGGTTAGATAAATGGGGCTATGGGATTATACTCCCCGCTTCTGCCTTGTTTAATATAAATATATTTTCAATATATATATACCACTTTTTTGGCTAATTAGAAAAATAAATTAGATAGTTTTGAGACTCTAATGTTAGTAGTTATGAGAAGGTTGTCCCGTTTTCGCCTTGTGCCATGGACATCTTTAAAGTAGACCTCGAGAGTATTATTTTTGTTAGTCTTGATCGAGTGTATTATGTATTAAATATGTGGATGTGATTTAAGCGCAGATATATCAGTAGCTACGGGTGTTGCAGAAGGGACGATCAGAAATTCATATAAAGATCTGTATCCGCACGTGTCGAAGATAATACCGGGTTGGTATGCGAAAGAGGAGGATCTTAAGAACCTGTGCAGTCCCTAA

mRNA sequence

ATGTCCGATGCGTTCTGCTCTGACTGTAAGCGTCAGACGGAGGTTGTTTTCGACCATTCCGCCGGAGATACTGTGTGTTCCGAGTGCGGCCTTGTGCTTGAGTCGCACTCCATTGATGAGACCTCCGAGTGGAGGACTTTTGCCAACGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCGACGAATCCGCTTTTGGCTGATGGTGGCCTCTCGACCGTGATTGCCAAGCCTAATGGTACGTCTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGGTCTAATCCAGATCGAGGGCTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGATCGAGCCAATGAAATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAGCCCCGCACGGTCAAGGAAATTTGCTCCGTTGCCAATGGGGCAACAAAGAAGGAGATTGGCCGAGCAAAGGAATATATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTGGAGATGGGAACGATACACGCCGGAGACTTCATGAGGCGTTTTTGTTCTAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTCGATATTAGGAGGAGCCCTATTTCCATTGCAGCAGCAGTTATTTACATTATCACTCAGCTTTCGGATGATAAGAAGCCTCTGAAAGATATATCAGTAGCTACGGGTGTTGCAGAAGGGACGATCAGAAATTCATATAAAGATCTGTATCCGCACGTGTCGAAGATAATACCGGGTTGGTATGCGAAAGAGGAGGATCTTAAGAACCTGTGCAGTCCCTAA

Coding sequence (CDS)

ATGTCCGATGCGTTCTGCTCTGACTGTAAGCGTCAGACGGAGGTTGTTTTCGACCATTCCGCCGGAGATACTGTGTGTTCCGAGTGCGGCCTTGTGCTTGAGTCGCACTCCATTGATGAGACCTCCGAGTGGAGGACTTTTGCCAACGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCGACGAATCCGCTTTTGGCTGATGGTGGCCTCTCGACCGTGATTGCCAAGCCTAATGGTACGTCTGGGGAGTTCTTGTCCTCGTCTTTGGGTCGGTGGCAGAATCGTGGGTCTAATCCAGATCGAGGGCTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGATCGAGCCAATGAAATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAGCCCCGCACGGTCAAGGAAATTTGCTCCGTTGCCAATGGGGCAACAAAGAAGGAGATTGGCCGAGCAAAGGAATATATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTGGAGATGGGAACGATACACGCCGGAGACTTCATGAGGCGTTTTTGTTCTAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTCGATATTAGGAGGAGCCCTATTTCCATTGCAGCAGCAGTTATTTACATTATCACTCAGCTTTCGGATGATAAGAAGCCTCTGAAAGATATATCAGTAGCTACGGGTGTTGCAGAAGGGACGATCAGAAATTCATATAAAGATCTGTATCCGCACGTGTCGAAGATAATACCGGGTTGGTATGCGAAAGAGGAGGATCTTAAGAACCTGTGCAGTCCCTAA

Protein sequence

MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDLKNLCSP

Homology

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BLAST of Csor.00g155510 vs. ExPASy Swiss-Prot
Match: Q9SS44 (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 5.3e-170
Identity = 296/312 (94.87%), Postives = 306/312 (98.08%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWY 300

Query: 301 AKEEDLKNLCSP 313
           AKEEDLKNL SP
Sbjct: 301 AKEEDLKNLQSP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy Swiss-Prot
Match: P48513 (Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 7.7e-169
Identity = 299/313 (95.53%), Postives = 302/313 (96.49%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPN-GTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 120
           GP+NPLL DGGLSTVIAKPN G  GEFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120

Query: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180
           GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 180

Query: 181 KKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEE 240
           KKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNNQAVKAAQEAVQKSEE
Sbjct: 181 KKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEE 240

Query: 241 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGW 300
           FDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIP W
Sbjct: 241 FDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNW 300

Query: 301 YAKEEDLKNLCSP 313
           YAKEEDLKNLCSP
Sbjct: 301 YAKEEDLKNLCSP 313

[Close]

BLAST of Csor.00g155510 vs. ExPASy Swiss-Prot
Match: Q8W0W3 (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIB PE=1 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 1.2e-158
Identity = 273/312 (87.50%), Postives = 294/312 (94.23%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSD+FC DCK+ TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1   MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNG  GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYK+VED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNNQAVKAAQEAVQ+SEE 
Sbjct: 181 KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IP  Y
Sbjct: 241 DIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY 300

Query: 301 AKEEDLKNLCSP 313
           AKEEDLKNLC+P
Sbjct: 301 AKEEDLKNLCTP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy Swiss-Prot
Match: P48512 (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 5.7e-156
Identity = 271/312 (86.86%), Postives = 292/312 (93.59%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N AVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P WY
Sbjct: 241 DIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWY 300

Query: 301 AKEEDLKNLCSP 313
           AKEEDLKNL SP
Sbjct: 301 AKEEDLKNLSSP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy Swiss-Prot
Match: Q9LIA6 (Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-66
Identity = 142/319 (44.51%), Postives = 200/319 (62.70%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 60
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 61  VGGPTNPLLADGGLSTVIAKPNGTSGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 120
           VG  TNP L  G L T+I KP  T+   LS    S+L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 121 TMSDRLGLVATIKDRANEIYKRVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 180
            M+D L L   I  RA EI  + +   + K  RG+  +A+ AA +  ACR+    RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180

Query: 181 ICSVANGATKKEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVK 240
           I  VANG  KK+I R +  ++K++    +T  S     I+ G+ +RRFCS L ++ + + 
Sbjct: 181 IAEVANGVDKKDI-RKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIM 240

Query: 241 AAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSD-DKKPLKDISVATGVAEGTIRNSYKD 300
           A  EAV+K+E FDIRR+P S+ AA+I++I+ +S  ++KP+++I +   V E TI+NS KD
Sbjct: 241 AIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKD 300

Query: 301 LYPHVSKIIPGWYAKEEDL 307
           +YP+  KIIP WYA E D+
Sbjct: 301 MYPYALKIIPNWYACESDI 318

[Close]

BLAST of Csor.00g155510 vs. NCBI nr
Match: XP_022152227.1 (transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 transcription initiation factor IIB-2 [Cucurbita moschata] >XP_022967855.1 transcription initiation factor IIB-2 [Cucurbita maxima] >XP_023544538.1 transcription initiation factor IIB-2 [Cucurbita pepo subsp. pepo] >KAG6603201.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 623 bits (1606), Expect = 5.58e-225
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. NCBI nr
Match: XP_004150610.1 (transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTED: transcription initiation factor IIB-2 [Cucumis melo] >KAA0043603.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa] >KGN54643.1 hypothetical protein Csa_012330 [Cucumis sativus] >TYK29758.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 621 bits (1601), Expect = 3.23e-224
Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKI+PGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKILPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. NCBI nr
Match: XP_022924909.1 (transcription initiation factor IIB-2-like [Cucurbita moschata] >XP_023518635.1 transcription initiation factor IIB-2-like [Cucurbita pepo subsp. pepo] >KAG6595678.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 620 bits (1599), Expect = 6.51e-224
Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GP+NPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPSNPLLADGGLSTVIAKPNGTAGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. NCBI nr
Match: XP_028766652.1 (transcription initiation factor IIB-2 [Prosopis alba])

HSP 1 Score: 615 bits (1587), Expect = 4.39e-222
Identity = 308/312 (98.72%), Postives = 309/312 (99.04%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGATGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLE GQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPAWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. NCBI nr
Match: KAF7819051.1 (transcription initiation factor IIB-2 [Senna tora])

HSP 1 Score: 615 bits (1586), Expect = 6.01e-222
Identity = 308/310 (99.35%), Postives = 308/310 (99.35%), Query Frame = 0


Query: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
           DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP
Sbjct: 2   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 61

Query: 63  TNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 122
           TNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV
Sbjct: 62  TNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLV 121

Query: 123 ATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 182
           ATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE
Sbjct: 122 ATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKE 181

Query: 183 IGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 242
           IGRAKEYIVKQLGLE GQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI
Sbjct: 182 IGRAKEYIVKQLGLENGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDI 241

Query: 243 RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWYAK 302
           RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP WYAK
Sbjct: 242 RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAK 301

Query: 303 EEDLKNLCSP 312
           EEDLKNLCSP
Sbjct: 302 EEDLKNLCSP 311

[Close]

BLAST of Csor.00g155510 vs. ExPASy TrEMBL
Match: A0A6J1HVL0 (transcription initiation factor IIB-2 OS=Cucurbita maxima OX=3661 GN=LOC111467238 PE=3 SV=1)

HSP 1 Score: 623 bits (1606), Expect = 2.70e-225
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy TrEMBL
Match: A0A6J1DFL4 (transcription initiation factor IIB-2 OS=Momordica charantia OX=3673 GN=LOC111019998 PE=3 SV=1)

HSP 1 Score: 623 bits (1606), Expect = 2.70e-225
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy TrEMBL
Match: A0A6J1EKQ3 (transcription initiation factor IIB-2 OS=Cucurbita moschata OX=3662 GN=LOC111435544 PE=3 SV=1)

HSP 1 Score: 623 bits (1606), Expect = 2.70e-225
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy TrEMBL
Match: A0A5D3E1U7 (Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00120 PE=3 SV=1)

HSP 1 Score: 621 bits (1601), Expect = 1.56e-224
Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKI+PGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKILPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. ExPASy TrEMBL
Match: A0A0A0KYQ5 (TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 PE=3 SV=1)

HSP 1 Score: 621 bits (1601), Expect = 1.56e-224
Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKI+PGWY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKILPGWY 300

Query: 301 AKEEDLKNLCSP 312
           AKEEDLKNLCSP
Sbjct: 301 AKEEDLKNLCSP 312

[Close]

BLAST of Csor.00g155510 vs. TAIR 10
Match: AT3G10330.1 (Cyclin-like family protein )

HSP 1 Score: 598.2 bits (1541), Expect = 3.8e-171
Identity = 296/312 (94.87%), Postives = 306/312 (98.08%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM NQ VKAAQE+VQKSEEF
Sbjct: 181 KEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WY
Sbjct: 241 DIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWY 300

Query: 301 AKEEDLKNLCSP 313
           AKEEDLKNL SP
Sbjct: 301 AKEEDLKNLQSP 312

[Close]

BLAST of Csor.00g155510 vs. TAIR 10
Match: AT2G41630.1 (transcription factor IIB )

HSP 1 Score: 551.6 bits (1420), Expect = 4.1e-157
Identity = 271/312 (86.86%), Postives = 292/312 (93.59%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK 180
           LVATIKDRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATK
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATK 180

Query: 181 KEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF 240
           KEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N AVKAAQEAVQKSEEF
Sbjct: 181 KEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEF 240

Query: 241 DIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWY 300
           DIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P WY
Sbjct: 241 DIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWY 300

Query: 301 AKEEDLKNLCSP 313
           AKEEDLKNL SP
Sbjct: 301 AKEEDLKNLSSP 312

[Close]

BLAST of Csor.00g155510 vs. TAIR 10
Match: AT3G29380.1 (Cyclin-like family protein )

HSP 1 Score: 255.0 bits (650), Expect = 7.9e-68
Identity = 142/319 (44.51%), Postives = 200/319 (62.70%), Query Frame = 0


Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 60
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 61  VGGPTNPLLADGGLSTVIAKPNGTSGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 120
           VG  TNP L  G L T+I KP  T+   LS    S+L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 121 TMSDRLGLVATIKDRANEIYKRVE---DQKSSRGRNQDALLAACLYIACRQEDKPRTVKE 180
            M+D L L   I  RA EI  + +   + K  RG+  +A+ AA +  ACR+    RT+KE
Sbjct: 121 RMTDALDLDIVINSRACEIVSKYDGHANTKLRRGKKLNAICAASVSTACRELQLSRTLKE 180

Query: 181 ICSVANGATKKEIGRAKEYIVKQL--GLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVK 240
           I  VANG  KK+I R +  ++K++    +T  S     I+ G+ +RRFCS L ++ + + 
Sbjct: 181 IAEVANGVDKKDI-RKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIM 240

Query: 241 AAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSD-DKKPLKDISVATGVAEGTIRNSYKD 300
           A  EAV+K+E FDIRR+P S+ AA+I++I+ +S  ++KP+++I +   V E TI+NS KD
Sbjct: 241 AIPEAVEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKD 300

Query: 301 LYPHVSKIIPGWYAKEEDL 307
           +YP+  KIIP WYA E D+
Sbjct: 301 MYPYALKIIPNWYACESDI 318

[Close]

BLAST of Csor.00g155510 vs. TAIR 10
Match: AT3G57370.1 (Cyclin family protein )

HSP 1 Score: 175.6 bits (444), Expect = 6.1e-44
Identity = 126/365 (34.52%), Postives = 183/365 (50.14%), Query Frame = 0


Query: 6   CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
           C  CK Q  VV DH    T C  CGL  +   I + S          +ND VR+  PTN 
Sbjct: 9   CRRCK-QINVVTDHVTRRTRCFGCGLEFKYRPIGDLS-------PVAENDTVRLPDPTNT 68

Query: 66  LLADGGLSTVI-------------------AKP-------------NGTSGEFLS----- 125
           LL++  LS V                    +KP             NG+S +FLS     
Sbjct: 69  LLSNTDLSIVTTEHKNGSFDDSLSLNLGNSSKPRLDPVSIATAKLMNGSSNDFLSLGTSQ 128

Query: 126 --------------SSLGRWQNRGSNP------DRGLILAFKTIATMSDRLGLVATIKDR 185
                         S LG  Q    +P           L+  +I  +S+ L L ATIK +
Sbjct: 129 NSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKALSIVSIEAISNGLKLPATIKGQ 188

Query: 186 ANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKE 245
           ANEI+K VE    +RG+ ++ L AAC+YIACR  D  RT++EI   AN A+  +I     
Sbjct: 189 ANEIFKVVESY--ARGKERNVLFAACIYIACRDNDMTRTMREISRFANKASISDISETVG 248

Query: 246 YIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEF-DIRRSPI 305
           +I ++L +     +   +I   +F++RFCS   ++ +AV+AA EA +  +   + RR+P+
Sbjct: 249 FIAEKLEINKNWYM---SIETANFIKRFCSIFRLDKEAVEAALEAAESYDYMTNGRRAPV 308

Query: 306 SIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPGWYAKEEDLK 313
           S+AA ++Y+I +LS +K  LK +  ATGVAE TI+ +Y DLYP++  I+P W+A   DLK
Sbjct: 309 SVAAGIVYVIARLSYEKHLLKGLIEATGVAENTIKGTYGDLYPNLPTIVPTWFANANDLK 360

[Close]

BLAST of Csor.00g155510 vs. TAIR 10
Match: AT4G10680.1 (transcription factor IIB (TFIIB) family protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-20
Identity = 70/196 (35.71%), Postives = 102/196 (52.04%), Query Frame = 0


Query: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62
           D  C +CKR TE V ++  GDT+C ECG V+E++ ID+                   G  
Sbjct: 4   DGICLECKRPTETVVNYKNGDTICIECGHVIENNIIDDLD-----------------GAS 63

Query: 63  TNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQN---RGSNPDRGLILAFKTIATMSDRL 122
           TNP L  G L T+I K +G S   L+S L R QN   +    +  + +A+  I  M++ L
Sbjct: 64  TNPNLKSGHLPTIIFKLSGKSSS-LASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEAL 123

Query: 123 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGAT 182
           GL   I + A +I  +++ +    G++   L AA +  ACRQ + P+T+KEI +VAN   
Sbjct: 124 GLTFGISNTACKILSKLDKKNLRGGKSLRGLCAASVSRACRQVNIPKTLKEISAVAN-VD 176

Query: 183 KKEIGRAKEYIVKQLG 196
            KEI +A    VK LG
Sbjct: 184 MKEINKA----VKLLG 176

The following BLAST results are available for this feature:

BLAST of Csor.00g155510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS44	5.3e-170	94.87	Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 ...	[more]
P48513	7.7e-169	95.53	Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1	[more]
Q8W0W3	1.2e-158	87.50	Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
P48512	5.7e-156	86.86	Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 ...	[more]
Q9LIA6	1.1e-66	44.51	Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 ...	[more]

BLAST of Csor.00g155510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152227.1	5.58e-225	100.00	transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 tran...	[more]
XP_004150610.1	3.23e-224	99.36	transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTE...	[more]
XP_022924909.1	6.51e-224	99.36	transcription initiation factor IIB-2-like [Cucurbita moschata] >XP_023518635.1 ...	[more]
XP_028766652.1	4.39e-222	98.72	transcription initiation factor IIB-2 [Prosopis alba]	[more]
KAF7819051.1	6.01e-222	99.35	transcription initiation factor IIB-2 [Senna tora]	[more]

BLAST of Csor.00g155510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVL0	2.70e-225	100.00	transcription initiation factor IIB-2 OS=Cucurbita maxima OX=3661 GN=LOC11146723...	[more]
A0A6J1DFL4	2.70e-225	100.00	transcription initiation factor IIB-2 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1EKQ3	2.70e-225	100.00	transcription initiation factor IIB-2 OS=Cucurbita moschata OX=3662 GN=LOC111435...	[more]
A0A5D3E1U7	1.56e-224	99.36	Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KYQ5	1.56e-224	99.36	TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 ...	[more]

BLAST of Csor.00g155510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10330.1	3.8e-171	94.87	Cyclin-like family protein	[more]
AT2G41630.1	4.1e-157	86.86	transcription factor IIB	[more]
AT3G29380.1	7.9e-68	44.51	Cyclin-like family protein	[more]
AT3G57370.1	6.1e-44	34.52	Cyclin family protein	[more]
AT4G10680.1	2.1e-20	35.71	transcription factor IIB (TFIIB) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000812	Transcription factor TFIIB	PRINTS	PR00685	TIFACTORIIB	coord: 41..54 score: 50.0 coord: 212..230 score: 47.37 coord: 19..39 score: 54.6 coord: 55..76 score: 59.09 coord: 179..194 score: 50.83 coord: 244..260 score: 60.78 coord: 152..171 score: 68.0 coord: 276..290 score: 63.11
IPR000812	Transcription factor TFIIB	PANTHER	PTHR11618	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 3..312
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 211..290 e-value: 4.3E-7 score: 39.6 coord: 110..192 e-value: 1.3E-8 score: 44.6
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 104..185 e-value: 2.47951E-13 score: 62.6412
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 207..289 e-value: 2.48269E-9 score: 51.4705
IPR013137	Zinc finger, TFIIB-type	PFAM	PF08271	TF_Zn_Ribbon	coord: 6..47 e-value: 5.8E-15 score: 54.5
IPR013137	Zinc finger, TFIIB-type	PROSITE	PS51134	ZF_TFIIB	coord: 2..34 score: 9.105444
None	No IPR available	GENE3D	1.10.472.170		coord: 5..193 e-value: 6.1E-66 score: 224.0
None	No IPR available	GENE3D	1.10.472.10		coord: 208..311 e-value: 1.2E-32 score: 114.1
None	No IPR available	PANTHER	PTHR11618:SF69	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	coord: 3..312
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 4..50
IPR013150	Transcription factor TFIIB, cyclin-like domain	PFAM	PF00382	TFIIB	coord: 213..281 e-value: 4.5E-9 score: 36.2 coord: 112..176 e-value: 2.3E-19 score: 69.2
IPR023486	Transcription factor TFIIB, conserved site	PROSITE	PS00782	TFIIB	coord: 144..159
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 207..308
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 105..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g155510.m01	Csor.00g155510.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070897	transcription preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005634	nucleus
cellular_component	GO:0097550	transcription preinitiation complex
molecular_function	GO:0017025	TBP-class protein binding