Csor.00g155430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g155430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr09: 7458461 .. 7458709 (-)
RNA-Seq Expression	Csor.00g155430
Synteny	Csor.00g155430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTGCAATAGCCAACTGCCTAATATGGAGACCATCTTTTCCCCCAACACACCACCACCACCACCACCACCCATCATATGTAGCATCAGCCAAGGTAACTCCCCAACCAACCATTTCCAACAGCAACGTAATGGATGGTACACCCAGGTTGGTTCGAAGCCGAGCCGTAAGAAGGGACCTAGTACAAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAGCGCGTTTTACGTTCGAGTAG

mRNA sequence

ATGCTCTGCAATAGCCAACTGCCTAATATGGAGACCATCTTTTCCCCCAACACACCACCACCACCACCACCACCCATCATATGTAGCATCAGCCAAGGTAACTCCCCAACCAACCATTTCCAACAGCAACGTAATGGATGGTACACCCAGGTTGGTTCGAAGCCGAGCCGTAAGAAGGGACCTAGTACAAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAGCGCGTTTTACGTTCGAGTAG

Coding sequence (CDS)

ATGCTCTGCAATAGCCAACTGCCTAATATGGAGACCATCTTTTCCCCCAACACACCACCACCACCACCACCACCCATCATATGTAGCATCAGCCAAGGTAACTCCCCAACCAACCATTTCCAACAGCAACGTAATGGATGGTACACCCAGGTTGGTTCGAAGCCGAGCCGTAAGAAGGGACCTAGTACAAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAGCGCGTTTTACGTTCGAGTAG

Protein sequence

MLCNSQLPNMETIFSPNTPPPPPPPIICSISQGNSPTNHFQQQRNGWYTQVGSKPSRKKGPSTRLEFRRGGRSSALARFTFE

Homology

[Close]

BLAST of Csor.00g155430 vs. NCBI nr
Match: KAG7020978.1 (hypothetical protein SDJN02_17666, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137 bits (346), Expect = 2.60e-40
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 10 METIFSPNTPPPPPPP--IICSISQGNSPTNHFQQQRNGWYTQVGSKPSRKKGPSTRLEF 69
          METIFSPNTPPPPPPP  IICSISQGNSPTNHFQQQRNG YTQVGSKPSRKKGPSTRLEF
Sbjct: 1  METIFSPNTPPPPPPPPPIICSISQGNSPTNHFQQQRNGRYTQVGSKPSRKKGPSTRLEF 60

Query: 70 RRGGRSSALARFT 80
          RRGGRSSALARFT
Sbjct: 61 RRGGRSSALARFT 73

The following BLAST results are available for this feature:

BLAST of Csor.00g155430 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g155430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020978.1	2.60e-40	95.89	hypothetical protein SDJN02_17666, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g155430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g155430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g155430.m01	Csor.00g155430.m01	mRNA