Csor.00g155060 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g155060
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	exosome complex component RRP4 homolog
Location	Csor_Chr19: 51981 .. 54940 (-)
RNA-Seq Expression	Csor.00g155060
Synteny	Csor.00g155060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGTATATAAATACTCACTATCTTTATATAATAGTTGCTTGGATTGTGTACTTTCCAGGGGATTATATGTATTGAGGTATAATTGAAATTTGTGTACAGGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGGTTGTCCATGAAACTTTGTAATTTGGTTTTTTCTTGATGATAATTTAATGTTTCCCTTTCTTTAATTTCTTGTTATTATATCTTTTCTGATGTAATTGTCTGTTCTGGATATTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTAAAAACGAATGTGTTTTTAATTAGTTTTTTGGTTTTAGATAAATGTAACATAGAGACGTTGGTGAGTGAAACAGACGAGAAAAACTTATTTGGAGTCATGGTAATGATGCTGTAAATAGGAAAATGTTTTACAATTTCTTCCTGTCTGATGCTATCTTAATCAGGTTGCCCCTAAACGTTGGAGATTGAATATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGGTATTGTAGAATTCCTACCAGACGATGAATTAGCTGTGCCTTCTGATGAACTTTATGGATAATTTACTGCCAAATTGCTGCAATTGATCTTTTTCTTAAAGAGTGGTTGCATTTGTTCGAACGTTGGGATAATTGTGTGGAACTTTGATGCATTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTGTAAGTTCTTTTTAGCTCTTACTTTCACCTATCACCGTCAGAAAGAATATTGCCACTAAGTTTCTCATGTGACATACATACAGTGGGTTTTCTCCTATATTTTGACATTTTTGAAGAATTAAACTTTTTGCATTTGTGGGGGGAGACAACTCTTAGCAAAATGTAGTAGGGTTAAACAATTATCTTGTGAGAACAGCTGAGATGCGTCCAAGCTGGCTTAGACACGTACAAATATAAAAGAATATTTATATCCTACCTTGGACGTTATCATGGGTACCATGGAGATAGAACCAAAACTTTAAGTTTTGCCGTCATGGCCATTAGGCCGAAACATGATGGTTATGAACTTTTGTTAGTTAATCGCATGCCCTTTGCATAGGCTGCGGCACATTAGATAGATAGATGCACCTTTGGCACCTTGCCGGTTCTAGCCCAGTGTCTTAGCTCAAGTGCCATTTTCTTTTGTGCCTTTGCTCCTTACTGAGGTCCTTAAATTTTCTTGACATTCTAGTGTTGCTGTAGGTGTCTAACTCAAGCGTCTATTTGTGTCTCTTTCCCTTAAGTGCCATTTCTGAAGTTTTATCTTCCATTTTTCTATCCGTTTACTTTACAGCAAGTGATGCAACATATCCATTGTTGCTTCTTTTTCCCACCTGTCACCTCTCTCGACTCAAGCCATGCCTTGTGCCTTGCACAAAGGCTTGAAGAGATGTACTTTGGCGCTTCAGTTTACCTTGCACTATAATAAATAAACACCGCTCTTATCAGTAGTAATTATTCATGCATATTTTCCATTTAAGAAAAAATAACTTCACCAAATTTTTTCTCAGGCAGAAGTGCGTGGTTTTCAGCATGATGGCCTACACCTTCAAGCGAGAAGCCAGAAGTATGGGAAGGTAAAAAGAGTCGCTCCTTTTTAAGCTTCTGGATTTTGATGTAAAAACAAAGAATTTAGAATCAAATTTCCGTACGTCTCCTGCATCCTCACTGGTGTCTTAGGAGAGATTCCGTAGAAATATTCTTGATAGCATGTGAATACTGATTTATAGACGAATATCATGGGGCAAATTCTAGTGATTAAAACGAATTCTGGAGATGATTATAAAGTTGTTGCACAGGAATAAGGGAGAAAAACCAGGAAGGGATTCATTAAGGTGAAAAGACTCATGGGTGGAAATATTTAGTGATTATAAAGAGGAGCTAGCAGATGGGTGGGAGGCAAAAATGTAAAAGATAGTATAGAGAAGTGATTGTGGAGAACACAAAAAAATTGATTCACTGCTAAGGCGTGAAGGACTATAACACAATAGAACAACACGTCTAATTGTTACATTTTTCCTCTTGCTCGTATGATATGTTCAAGATCTTGGAGGTTACCTTACATTTGAATATGGTATCTTTGATCCAATGGTTATTTTGCTCCGAACAACTTTTCTGGCATCATCTCATCTCATTTCTTTACAATTTGTAAACAAGAGTTGTGCACTGTTATCCAGCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGA

mRNA sequence

ATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAATATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGA

Coding sequence (CDS)

ATGAGAGAATTACAAATTTCCTTGAATCAAACCCAGAAGATTCGGCTTCAAAGAGCCCTAGAATTGCTCGAGTCTATCTCTTCGAAGGCCAATTCCGATGCTTCTGTTATAGTTGCTGATACCATTCCTTTGAATTACGACGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTAAATGGAGAAGTAGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCTAGATATAAACCGGAGGTTGGTGATATCATAGTGGGGCGTGTTACAGAGGTTGCCCCTAAACGTTGGAGATTGAATATAAATTATAGCCAAGATGCTGTCTTGATGCTTTCTTCAATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTCGAAGAAAATGATGTTATTTGTCTTGAACGAGGTCAGCTGCTCACAGTATCACCATATCTAGTCAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATATTCGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCCACAGAGGATATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAGTGCAAGAAAGAGTATATACTCCACTAGAGACACGTCAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCCAACTTAGGTTTCATAATGACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTTTTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTGTGTCCTCACTGCAGAAAAAGAGGCTGAACGGCGGACTTCGAGTAAGAAGAGGGGATGA

Protein sequence

MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICLERGQLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTSSKKRG

Homology

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BLAST of Csor.00g155060 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.8e-107
Identity = 201/327 (61.47%), Postives = 252/327 (77.06%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC-----------------------LERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+C                       LE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

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BLAST of Csor.00g155060 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-36
Identity = 94/213 (44.13%), Postives = 123/213 (57.75%), Query Frame = 0


Query: 13  KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICLE-----------------------RGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I  E                       +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLIFGCNGFIWI---GEHVD 200
           +K HFH L   G  +I G NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

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BLAST of Csor.00g155060 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.4e-36
Identity = 92/214 (42.99%), Postives = 122/214 (57.01%), Query Frame = 0


Query: 13  KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     + +    V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICLE-----------------------RGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I  E                       +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTED 204
           +K HFH L   G  +I G NGFIW+    +  ED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

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BLAST of Csor.00g155060 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 95/283 (33.57%), Postives = 151/283 (53.36%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           M E++  + + +++ L    ++LE      + +   +V     +  D   ++GHGT   +
Sbjct: 24  MTEMEDEIMEDEQMGLVDGEDVLEEFDKSIHQN---LVTPGQLVTDDPQFMRGHGTYFED 83

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           G + A++ G V+RVNKLI V+ LR++Y PE+GD+I+G++ EV PKRW+++I   Q+AVLM
Sbjct: 84  GGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLM 143

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC-----------------------LERG 180
           LSS+NLP GIQRR+   DEL MRS F+E D++                        L  G
Sbjct: 144 LSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNG 203

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240
             L V P LV R K H + L   G+D+I   NG++W+ +H    E+      + + E++ 
Sbjct: 204 VFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKH---NENQHSSVSITRLEEEA 263

Query: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMT 261
           S  E  + N+  E       TR NI R +  I+ L++    +T
Sbjct: 264 S--ESIYSNENDE---IDGYTRLNISRVSICIKGLASRSLPLT 294

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BLAST of Csor.00g155060 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-35
Identity = 91/205 (44.39%), Postives = 118/205 (57.56%), Query Frame = 0


Query: 13  KIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  A + L     +      V+  DTI    D G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDI+VGR+TEV  KRW++  N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICLE-----------------------RGQLLTVSPYLVKR 192
           RR+A DEL MR   +E D+I  E                       +G L+ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLIFGCNGFIWI 195
           +K HFH L   G  +I G NGFIWI
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWI 205

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BLAST of Csor.00g155060 vs. NCBI nr
Match: KAG6571439.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 595 bits (1534), Expect = 3.06e-214
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICLERGQLLTVSPYLVKRRKQHFHHLEQY 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICLERGQLLTVSPYLVKRRKQHFHHLEQY
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICLERGQLLTVSPYLVKRRKQHFHHLEQY 180

Query: 181 GIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQ 240
           GIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQ
Sbjct: 181 GIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQVQERVYTPLETRQ 240

Query: 241 NICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTS 300
           NICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTS
Sbjct: 241 NICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINVHEMLGSEFCVLTAEKEAERRTS 300

Query: 301 SKKRG 305
           SKKRG
Sbjct: 301 SKKRG 305

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BLAST of Csor.00g155060 vs. NCBI nr
Match: XP_022963877.1 (exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963878.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_022963879.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >KAG7011206.1 Exosome complex component RRP4-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 582 bits (1501), Expect = 7.42e-209
Identity = 305/327 (93.27%), Postives = 305/327 (93.27%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. NCBI nr
Match: XP_023554062.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554063.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023554064.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 580 bits (1495), Expect = 6.09e-208
Identity = 304/327 (92.97%), Postives = 304/327 (92.97%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLS SLNINV
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. NCBI nr
Match: XP_022967543.1 (exosome complex component RRP4 homolog isoform X1 [Cucurbita maxima] >XP_022967544.1 exosome complex component RRP4 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 565 bits (1455), Expect = 7.59e-202
Identity = 297/327 (90.83%), Postives = 301/327 (92.05%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQ+IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRR+TA DELNMRSIFEENDVIC                      +ERGQ
Sbjct: 121 LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFI IGE VDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLS SLNINV
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 556 bits (1432), Expect = 2.42e-198
Identity = 288/327 (88.07%), Postives = 299/327 (91.44%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS SLNI+V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 582 bits (1501), Expect = 3.59e-209
Identity = 305/327 (93.27%), Postives = 305/327 (93.27%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 565 bits (1455), Expect = 3.67e-202
Identity = 297/327 (90.83%), Postives = 301/327 (92.05%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MRELQISLNQTQ+IRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRR+TA DELNMRSIFEENDVIC                      +ERGQ
Sbjct: 121 LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFI IGE VDPTEDMMIEDQVNKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLS SLNINV
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 553 bits (1424), Expect = 1.94e-197
Identity = 287/327 (87.77%), Postives = 298/327 (91.13%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS SLNI+V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 305
           HEMLGSEFCVLTAEKEAERRTSSKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of Csor.00g155060 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 552 bits (1422), Expect = 3.78e-197
Identity = 286/325 (88.00%), Postives = 297/325 (91.38%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQ+SLNQTQKIRLQRALE LESISSKANSDASV+VADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDPTEDMM+ED +NKSEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300
           KFEG+FGNQVQER+YTPLETRQNICRTANAIRVLS LGFIM+VEVIMETVSLS SLNI+V
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCVLTAEKEAERRTSSKK 303
           HEMLGSEFCVLTAEKEAERRTSSKK
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of Csor.00g155060 vs. ExPASy TrEMBL
Match: A0A6J1DNK7 (exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022753 PE=4 SV=1)

HSP 1 Score: 518 bits (1334), Expect = 1.03e-183
Identity = 272/328 (82.93%), Postives = 285/328 (86.89%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR LQISLNQTQKIRLQ ALE LESIS KANSDASVIVADTIP+NY+DG+LKGHGT DL+
Sbjct: 1   MRGLQISLNQTQKIRLQSALESLESISLKANSDASVIVADTIPVNYEDGILKGHGTFDLH 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GEVVAT+CGVVERVNKLIYVRALRARYKPEVGDI+VGRV EVAPKRWRL+INYSQ AVLM
Sbjct: 61  GEVVATVCGVVERVNKLIYVRALRARYKPEVGDIVVGRVMEVAPKRWRLDINYSQAAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC----------------------LERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC                      LERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240
           LLTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP EDMMIEDQVNK EQKG 
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPAEDMMIEDQVNKFEQKGP 240

Query: 241 KFEGTFGN-QVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           K EG FGN + QERVYTPLETR+NICR ANA+RVLS LGFI+TVEVIMETV+LS SLNI+
Sbjct: 241 KSEGNFGNLEEQERVYTPLETRRNICRAANAVRVLSTLGFIVTVEVIMETVNLSLSLNID 300

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKRG 305
           VHEMLGSEFCVL AE E ERRTSSKKRG
Sbjct: 301 VHEMLGSEFCVLVAENEVERRTSSKKRG 328

[Close]

BLAST of Csor.00g155060 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 389.8 bits (1000), Expect = 2.0e-108
Identity = 201/327 (61.47%), Postives = 252/327 (77.06%), Query Frame = 0


Query: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60
           MR+LQ+ L+QTQK+R +RA+E L+S+SS ANSDASVIV D+IP+N+DD  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDI+VGRV EVA KRWR+ +N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVIC-----------------------LERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+C                       LE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QLLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKG 240
           QLL V PYLVKR K HFH++E  GIDLI GCNGFIW+GEHV+  + M I+DQ ++ E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKDE-EMIS 242

Query: 241 SKFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNIN 300
           S   G      +E+ + PLETRQ ICR  NAIRVLSNLGF +T+EVIMETV+LS S NI+
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCVLTAEKEAERRTSSKKR 305
           +H+MLGSEF V+ AE EAERR + +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:

BLAST of Csor.00g155060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	2.8e-107	61.47	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q8VBV3	2.0e-36	44.13	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q2KID0	4.4e-36	42.99	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q09704	1.3e-35	33.57	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q13868	3.8e-35	44.39	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of Csor.00g155060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571439.1	3.06e-214	100.00	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022963877.1	7.42e-209	93.27	exosome complex component RRP4 homolog isoform X1 [Cucurbita moschata] >XP_02296...	[more]
XP_023554062.1	6.09e-208	92.97	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02355406...	[more]
XP_022967543.1	7.59e-202	90.83	exosome complex component RRP4 homolog isoform X1 [Cucurbita maxima] >XP_0229675...	[more]
KAG6606437.1	2.42e-198	88.07	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Csor.00g155060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HGD9	3.59e-209	93.27	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HVC7	3.67e-202	90.83	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1K7S0	1.94e-197	87.77	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1EXY1	3.78e-197	88.00	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1DNK7	1.03e-183	82.93	exosome complex component RRP4 homolog isoform X2 OS=Momordica charantia OX=3673...	[more]

BLAST of Csor.00g155060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	2.0e-108	61.47	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 157..197 e-value: 5.3E-12 score: 46.0
None	No IPR available	GENE3D	2.40.50.140		coord: 88..155 e-value: 4.1E-13 score: 51.1
None	No IPR available	GENE3D	2.40.50.100		coord: 36..87 e-value: 1.8E-17 score: 64.6
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 10..155
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 154..300
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 86..155 e-value: 2.6628E-25 score: 94.9237
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 44..82
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 10..155 coord: 154..300
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 85..154
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 157..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g155060.m01	Csor.00g155060.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding