Csor.00g154860 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g154860
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 177702 .. 179620 (+)
RNA-Seq ExpressionCsor.00g154860
SyntenyCsor.00g154860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTGCTCGAATCGTCTCTTTCTACCTCCTAACAGCGGAGCCTCCATTCTGATCGAACTTATCCACACTCAAAACCTTTGCCCCATCAATCGCATCACCGTCGTTGTTCGCATATCCCTGGTCGGGTCTGTGAAGCTTTTGTTTATATCTGAGTGCCCTGTGTCACTATCAACCGACGGAAAGTAAGCTGTGATCCCACGCCCCAAATTGATAAGGGGCGACCTTCAACTGGCACCCATCTAGCACTGTGAGGGCTAAGATTGAGAAGTGTCATGATGCGAATAAAGAGGACGATGAATCACACACTAAGAATATGCATTGAAGCTAAGTTGAGGCATACACAAAGTTCGAGAGAACGAGGCGAGATTAGTGTCGAAAACAAGTTTAAAGAGGACCGTCGGGTAAGACCTCGGACCATAACCTCAGAAGTCGAAGTTTCAATATGAGTTTAGACATGCGGCTCGGGAATTAAGTCTATCTATATGAAAGATGAAAGACTCAATAAATTTGGTGTCAATCGGATACCCGACAGACTATGCACAAGGTCGTATATTCGCTCCTAAAAAATGACGGCTACTCGATAAGGATGGGAAATGACTTAAAATGTACTATAGGAGAGGCATGATGTCAACTCTACACCCCTTTGGGTCATGTGACCTAAGCGAGTTACTATGTGGTACATGTGTGTGTCACAATGAAGGTAAGCGTTCCTAAACGAGTGTCTCAAGCAACTTCCTTTGAAATGAGTTTTTCAAGGACAATACTGGACGACACAGGTGCACTGATATTGCGCCTATCCTATGTGTCGGAGGTTAGATAATGCACCCGTTACCCGGAACAAATGCTGTAAATGGTCTACCATGGACACGGGAGAGTCTAATGCCGGATAAGAACCCAGATGGATGGATGTTCGAGATGTTCCGATGAGATGATCGACACATGGATCAGTTTCCAATAGATGTGTCTGAGTAAGCCAAGGCATAGGGATGACATCATGATGCATGGGTTGTGTTGTTGGGAACCGAGATGACAATGAGATGCAATGTTGGTGTGTAGCAGACGAATGAACATGCACACGCAACAGCATGTGTTGCCAAAGAAACTTGGAATCCGTGCAAGTAACATTTGGTTGGTGAGGACAAACCTTGTCTAAGGTTGGACGAAACCGTGGAGCAGGACGAAAAATGAATATAGGACTTTTAAGTCCCTTCAAAATTTTGTGGAGGAGTATGTCAACATCATGACATATTGTGAAATCGTGGCTCACTTCATGTTGTATCTCAGTGCTTCTATGTGCGATGATGAAGGACATGGATGGAGTTGTTTCGATGCTTGATTTTGGACACCGATAATGCTCCTATTAATCTAGGGTTTGTGGTTCCGATTTTCAATTCCAATCCATGTCTTCCTTACCTCCCATTGAATCGCCTGTTGAACCATTCGCTTCGACTTTTTCCAATTCTTCTGTTTATGTTTATTTATTTGTTGCCGATATTCATCAATTGTTCTGATTTGCACATTCATTGTTGTAACATCACATTTGATTAAAGATATATCAGAACTGGCATCGAAATCGGAATGAAGTTTCGATTTCTGAACGTTTTTGCAGAGTGAAAAGAGGGAAACAAACGCGCATCAAGCACATTCAATTAGTAGAGGAACGAAAGCAAAAAAGAACTGTTCAATGGGATTTGAAGACCATCACGGCTATGGAAATCAGCAAGAGAGATGGTGAGCGGGAACAAGATGGAGTAGATGCGGATGGAGCTAAAACCGGTCGGATCCGACGGTGGGCTGCTTCTGGAGCTTGCGATTCCGCTGGAGAATACGTCGGTGTCAATTGCTGCGGCTGTGGCTGGCTGCTTTCTGGTGCCGGAGCTACTGCTACTGCTTTGGAAACTGCCCACACAAATTAA

mRNA sequence

ATGCAGTGCTCGAATCGTCTCTTTCTACCTCCTAACAGCGGAGCCTCCATTCTGATCGAACTTATCCACACTCAAAACCTTTGCCCCATCAATCGCATCACCGTCGTTGTTCGCATATCCCTGGTCGGGACATGGATGGAGTTGTTTCGATGCTTGATTTTGGACACCGATAATGCTCCTATTAATCTAGGAGTGAAAAGAGGGAAACAAACGCGCATCAAGCACATTCAATTAGTAGAGGAACGAAAGCAAAAAAGAACTGTTCAATGGGATTTGAAGACCATCACGGCTATGGAAATCAGCAAGAGAGATGGTGAGCGGGAACAAGATGGAGTAGATGCGGATGGAGCTAAAACCGGTCGGATCCGACGGTGGGCTGCTTCTGGAGCTTGCGATTCCGCTGGAGAATACGTCGGTGTCAATTGCTGCGGCTGTGGCTGGCTGCTTTCTGGTGCCGGAGCTACTGCTACTGCTTTGGAAACTGCCCACACAAATTAA

Coding sequence (CDS)

ATGCAGTGCTCGAATCGTCTCTTTCTACCTCCTAACAGCGGAGCCTCCATTCTGATCGAACTTATCCACACTCAAAACCTTTGCCCCATCAATCGCATCACCGTCGTTGTTCGCATATCCCTGGTCGGGACATGGATGGAGTTGTTTCGATGCTTGATTTTGGACACCGATAATGCTCCTATTAATCTAGGAGTGAAAAGAGGGAAACAAACGCGCATCAAGCACATTCAATTAGTAGAGGAACGAAAGCAAAAAAGAACTGTTCAATGGGATTTGAAGACCATCACGGCTATGGAAATCAGCAAGAGAGATGGTGAGCGGGAACAAGATGGAGTAGATGCGGATGGAGCTAAAACCGGTCGGATCCGACGGTGGGCTGCTTCTGGAGCTTGCGATTCCGCTGGAGAATACGTCGGTGTCAATTGCTGCGGCTGTGGCTGGCTGCTTTCTGGTGCCGGAGCTACTGCTACTGCTTTGGAAACTGCCCACACAAATTAA

Protein sequence

MQCSNRLFLPPNSGASILIELIHTQNLCPINRITVVVRISLVGTWMELFRCLILDTDNAPINLGVKRGKQTRIKHIQLVEERKQKRTVQWDLKTITAMEISKRDGEREQDGVDADGAKTGRIRRWAASGACDSAGEYVGVNCCGCGWLLSGAGATATALETAHTN
Homology
[Close]
BLAST of Csor.00g154860 vs. NCBI nr
Match: KAG6571459.1 (hypothetical protein SDJN03_28187, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330 bits (845), Expect = 7.24e-114
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MQCSNRLFLPPNSGASILIELIHTQNLCPINRITVVVRISLVGTWMELFRCLILDTDNAP 60
           MQCSNRLFLPPNSGASILIELIHTQNLCPINRITVVVRISLVGTWMELFRCLILDTDNAP
Sbjct: 1   MQCSNRLFLPPNSGASILIELIHTQNLCPINRITVVVRISLVGTWMELFRCLILDTDNAP 60

Query: 61  INLGVKRGKQTRIKHIQLVEERKQKRTVQWDLKTITAMEISKRDGEREQDGVDADGAKTG 120
           INLGVKRGKQTRIKHIQLVEERKQKRTVQWDLKTITAMEISKRDGEREQDGVDADGAKTG
Sbjct: 61  INLGVKRGKQTRIKHIQLVEERKQKRTVQWDLKTITAMEISKRDGEREQDGVDADGAKTG 120

Query: 121 RIRRWAASGACDSAGEYVGVNCCGCGWLLSGAGATATALETAHTN 165
           RIRRWAASGACDSAGEYVGVNCCGCGWLLSGAGATATALETAHTN
Sbjct: 121 RIRRWAASGACDSAGEYVGVNCCGCGWLLSGAGATATALETAHTN 165

The following BLAST results are available for this feature:
BLAST of Csor.00g154860 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g154860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571459.17.24e-114100.00hypothetical protein SDJN03_28187, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g154860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g154860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g154860.m01Csor.00g154860.m01mRNA