Csor.00g154670 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g154670
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Location	Csor_Chr19: 277744 .. 287439 (-)
RNA-Seq Expression	Csor.00g154670
Synteny	Csor.00g154670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCGTTAGGTAATGCTCTTACGCTCTTCTCTTTTCTAATTTCGATCTCCCTCTTCTCGATCTACTCGCTGTTCTCTACCCAGAATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATGTACAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTCACTTTCACTCACAACCACGCACATTGATATTTTCTAAATCTTGTTAAACCCTAGATTTACCAGCTTTGTAGCAAAGCTTTTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGCAAGTTGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGTCAATTTGGAGTGATTTATGATTTATCTTGAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAACTGTGTGTGGCTATTTTTCTTGCGATGGGTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTCAGTCTGTCCGCCAGTGTACGATAATCGTTTTTTCTTGCTTATGTCTCACAACTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGAAAGCTAACTGAAGAGTTCTGGCAAGCACGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTACTAGCCCACTCCTAGCAGATATTGTCCTCTTTGAGTTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAAGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCAATTTGGGATCTCACAAAACACCCCCCTTCGGGACCCAGCGTCTTCGCTGCCACTCGTTCCCTTCTCCAACCAATGTGGGACCCCCAATCCACCCCCCTTTGGGGCTCAGCCTCCACGCTGGCACATCGTCCGATGTCTAGCTCTGATACCATTTGTAACAGTCTAAGCCCACCGCTAGCAGATATTGTTTTCTTTGGGCTTTCTCTGTCGGGCTTCCTCTCAAGGTTTTTAAAACGCGTCTTCTAGGGAGAGGGTTCCACACCCTTATAAATAATGCTTCGTTCTCCTCCTCAACCAACGTGGGATCTCACAATTATCATCATTAAAAAAAAAAAAAAAAAAAAAAAAGAAAACTAGTATTAAACTCATAGGTTGTTTACGGGCAATTAAATTCCTTGTCATCTGAGTGTTGGGAGGATGTGGTATTTTCTCTGTATAGTTTTTATTTTTATCATTCTTAACAAACAAATCAATTTGAACAATTGACTTCTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATATCAGTAGATTTAAACAAATCTTTTGAATGTCCTCTCACATTTATATGGACTGATTCCTACTATTCCTTCTTTCCCCTTTGTTTTGTAGGGGTTGTTTCTTAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTATCACATGCACTAGAATGGCATCAACTTAGTCTGATTAAACACTAACTTCTGCTGAACCCCAGTATTTTTGGATTGTGTTGCTCATATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTTCGTTTTGGGTTTTGTCTTCTTTATCGTTTGAAATGTAATAATAGTTACCATCCCTAAATGCAAAAACCCTTGCATTTAGGGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATGTAGTGCACATTACAAAAGAAAGGCCTTGCTTTTTTATTTTTTTGCACCTTGAACGACATAAGGCTATTGTGCCTTGAGCTTTAGAAAACACTGATTACAATAGAATATGAATATCTTGTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACAAATAGAATCTATAATAGATTATTTTTTCCTTAAGAAATTCATAGAAGCACAATTCCAAAAGATCTTAGCCTTAAATTTAAGCCATCAGGCCGTGAGGGCTTCCAAGAAAAATCGTCAACCAAGCTGGGTTGGCATAATCAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAGTTTTGGGTTTCACCATAGGAATAGCAGAGGAACAAACCAGGGAAACAACCCAATTTTGAAACTTTTTTGGAGCCGCTTGGGGTGTTGAGGCTTCTTTAAGTAAGTGACCACACAATCATATTAACCTTTCTGGGGAAGTTAAACTTCCAAACTGATTTAACCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAGGTGATTTAGAGGAGAAGCAGTTGAATGAATCTATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTTTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACCCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCCTTGCCTATCTTTCTGGTTTGACCCCTTGTTGCCAACCATCACTCTTCTCCCTAAGCATTTAAGAATTAGAGCGTTATTTCCCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCCGGAAAGAGCCAATGGAAGGAAAGTCCAACTCCCTTTTATTGGGTGCTTCCACTTAACGTATCTCTCTATGCGGCTGCTACTGAAACTAGTTATTTTACTCACAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAATTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATTTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGGCAGCCTTGAGACTTTTCCTCCGGTGGAGGCGAGGTGAAAGCCTCAAGGTGATATGAAGCATAAGACTAATTTAATTAATTTTTTTTTTTACCAACAAACTTAGTAATCATAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGAAGCATGGACACATATGTCCGGACATGCTTTGGCCATGCTATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTATAGATTGAATCTTTAAATATTGATCAATCCTAAAGTATTAGGATGACATGTTCATCCTCTTGCAGCTAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAGTTGACTTAACTATGGATGTTTTTAGTGAAGCATATTTTATTTTTATGTTTAATTCACATTTTATCTATGAAAAAAAAAAAAATACTAATATACCTATATCGACACATATTTTATATAAAAAAAACTTGTCCCGAAGGTGCTTGTGCTACTTTTTAAGAATTTGATGTGTCTCAGTGTTTATATCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCTTTAACGTCACTACTATTATCATTGAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTTTTGTGTTTCATAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTCTGCGAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTAAGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGACGTAGCCTTACTATGTTTTTTTTGATGCCTGGGGTCTGTTATTGATTTACACTCTAATAGCATCACAATGATCAAACTCTGGCATGTCTCTAGATTGGAATCTCGTCTCTTATCTTCAACTTTGATTGATGTAGTCATGCAGTACTTAAGTTGGTTACAATGAAAGACTATTGTGTCAAGTCATTTCTGTAAGACTTCTTTAGAGCTCTTCCTCCTCCATTTGCGTTACTCGTTCACTTTGCGGGTAATGCTAGAGGCCCGGAGGTCTGTATGCCCGCTTTGGACCTGTTCTTGAATTTCTCCAAGTTCATTGTTAGCAGATATTGTTCTCTTTCAACCTTCTTTTCTAGGTTTTTCTTCAAGGTTTTTAAAATGCGTTTGTTAAGCCCTGAAGTCTGTACAGTTGCTTCAGGTCTTCAGGTCCGCTGTTCTTAAACTTTCTCAAGTTTACTATTAGGATATATTGTTTGTTTTAGGCTTTCACTTTTGGGTTTTTCTTGAAGGTTTTTAAAACGTGTTGTTAGGGAAATTTTTTTATATTCTTGTAAAAAATGCTTTGTTCTCTTCTCTAATTGATATGGATCTACCGTGTTTTTTATGTTATTATTGACCAAATAGTTCGTAATGCACAGGTGAAGAGATTTTTATCAAAATGTCTTCATCAATTCATATATTTCCTCGCTATGACTATGAGTTTGGCGCTTGTCTTTTCTGCTACTTTCTTCAAAATAAAATAGAAAAATTAATGGAGAATTACTTAAAAATCAGGGTAAATTAGGATGATTTTGGTTGTGTTTTAAGAAGACATGGGTATGGGTTAATATTTTATACTAAGAAATGGGATTAACATTACATTAGGGATTAAATGGATTGAATGAAAGCCACCGAATTAACTTTTTAATTTAATTAATTTCATTTCATTTATAATAAAGTCTTTAAGATCTTTTTTTACTTAAAATAATATTTGATTATATATATTTGTAACAAAAAAATTTCACCCGGTAAATTCTAGGGTCCTAAAAACTTTTACTTTCATCAACTTGGTCTCAGAACTGAATTAACTGATGCAAATATTTTCACTGTTTAATTTTTACTAATTAAATTACTAATTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAATCTAAAAAATCTAGAAAACCCGTTAATTTTTAAATAAAATAAAGCCTTGTACAATTTTTTTTTAATTATATATAATAATTAACATTTGAAGGGAAAATTAATGAAAAATTTGGGTTAGGGTTAAAATTATTTTATCTAATATTTTGTTCATCCTTCCAGGAAAATAGAAAGAGCAGTCGGAGCTCTCTGCTTCTGAGTCACCTAGTCGGCGCCGCCACAACAAGAACCATGGGAAAGAAACCGTCTGGGTCCAAGCAAGCATTTTTCATCCTCGGAGCCTTGGCACTGGGTTGGCTAGCCATTGAGATGGCCTTCAAGCCCTTCCTCGATAAGGCCCGCTCCGCCATGGACAACTCTGATCCGACTCGGGATCCCGACGACCGTCCGATAAACAATCTGATCACTTACAATCGGACGACGATCGAAGTACCACTGCTTGAAGTCGCATCATCTTGTGGCGGTATGAAAATTTGAATTTTACATCTTCTCCTCCGTATCTTATAAGGTCAGTACTAGACCATTTTAGTTTTTTTAGTTGAATTAAAGTGATTCAGTTCTTAATTTCATAATTAGTGCCTACTGTCCGGCAGTTTCTGAATGTGCTTGTTTTGACTCCTGTAAATCTAACTTCAAGCTTTGAAGTATGCGGATTACCTGTTCGACGAATTGTTTAAAAGAAATAAGGTGTTTTACTTGTTTAATGTGGTGGGTTTGTGACAATGCGGCTTTGTATAGAAATGAACTGAATCAGATCCCCTGCATATGAGCTTTCTTAGAGACTAAATACTCTCTTTAGAAGATTAGATTGACAGGAACAAATGCTTGTCTGTTGAAAGAATGAATTGATAATTATATTAGATAGGATCAAATGTTATTTGGGTGATGGGACTTATTGGCCTTATCATCACAATGTCGGAAGAAGTTGACTTAGACGGAGTATTTTACATGATAATGTGTTATATCTTTGTTGAACATTCTTCGGTGGTCTAGCTGCACGCCCACACCCGGCTCGATTGATGCCACTTGCATCCTCCTTCCACTCCGGTTATGATATCAATATCCATTTTGGAGCTATGAGCTTTTTAGAACTAGCTTTTAATGCCATTAGATGCTCCCCTTTTTTTCTTTTTTTAATATCTTCACATGCCAACTTTTGGTGTGATCTTAAGATAAATGGTGAGAAGGAATAACCAAACTACAATCCGTTATAGCCCATTTAGGGTTTGAAAAGCACCTCCATCGTTTGATTTGTCTTCAAGTTTCCTTTTATTGTTGGTTCATCCGTAGGGACAAAAAAGATGGACTGGAGAGACAGCAATGGAAGTGTTTATGGCTGAATTGTTGAACAACACGATCAAAACAATGTTAGAATCACGGACCTCCATAATGGTATGATGTTGTCCACTTTGAGTGCAAGCTCTCATGGCTTTGCTTTTAGTTTCTCCAAAAGGCTTTATACCAATGGAGATGTATTCCTTAATTAGCCGATATGGGACTCCCACAAACAATCCTCAACAAGCAAGAGCTTCTGAAGCTTTCTTTATGAGATTCCACGTTGGTTGGAAAGGGGGACAAAACATTATTTATAAGGGTGTGGAAACCTCTCCTTAATAGACGCGTTTTAAAACCGTGAGGTTGAGACAATACGTAACGGGCCAAAGAAGACAATATCTGCTAGTGGTGGGCTTGAGCTGTTACAAATGGTATCAAAGCCGGACACTGGACGATGTGCCAGCAAGGACACTGTCCCTCAAGAGGAGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACTTTTCCCTAGTAAACATATTTTAGAACCATGAGGATGATGACGATACGTAATGGGCCAAACCATACAATATTTGCTAGCATGGGCTTGAGCTGTTACATCTTTCTGTCTTTGCGTACCCATCTGGGTATTGCATACGAAATAAGAAAAAGACTGTCCCTTCAATGATGACTAGTGTTGCCTTTTGTTGGAAGTTCTGAATATTCTGGTTTTGTGAGACTATAGGAACTCCAACATTGAACTCGACACTTCTGCCTTGATTTAACAACAATGCATCTGACACTACTTCCTCTTGCTTTTTCGAGCATCATGTCATAGGAAAGCACCAATCAGCGTCCTGATATCTTCATTTAAGATTGAAAAGACAGGAGAAAAGAGACAAGGAAGTGAAACAAGTGCATTTCAAAGAAGCAATAACATTCACCACACTAGTCTCTAATCATCAAATGGGTATTCCTCATACCTAACTGCACAGTCATGGAGCACTGCACGACCCCCAATCCTCATTTGACACGATCCCAACATGTTGGTCTTAGCAGCACAAAGACCATGAGGTGCAGTCTGAGGTTGTGAGATTCTTGCTGCAGGAAGCATGTCCATAGGCGAAGGAATTAGGATAAGGAGATATGTTGTGGAAATCATATTTCTTTCTGGTGAGAGTTGAAATCTCCCATTCTTTTAGAACGTAATCCAGACTCACTGTGTAACAGTTTAAGCCCACCGCTAGCAGATGGTGTGGTCTTTGAACTTTCCCTTTTGAATTTTTTCTCACGGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACAGTCTCATAAAGAATGTTCCGTTCTCTTTCTCAGCTAATGTGAGATCTCACACTGCGTGAAAATTTTGGAGTTGCCGACACTCCAATGTTTGGAAAAGTTGCCGACATGACTCCAATTTTGGAACACTCAGCACCATAGTGGACATGGACAACCAACCATCCCTATCTATTTTCTTGCTTTTGTCCAATTTAAGTAATTGTTCTAAATGATTTTTGATTTTTGATGTATGTCTTCTGTCTTACAGCTCAGCGGGATCGTTCCCCGTAAGATCAATATCACAACTAATATCGCAAGACTAGACAAGTGACTCCCTCGCCTCCTAAAAAATTGACAAATTGAAGAGGGAAACTTGGGTGGCGGATCAAACAAGAACTTGTCGGTCTCGCTGCCTCTGTTTTTTTTCTCTGGCTATGACTGATTCCTTTGCCATTGGTCTCTTCCTTAAGGTCACAGCTTTGTCTTAGTTTTCGAAGGGGAAAACATTGAGTTCTATTCACGACGACTTCAGAAAAATAGTCAAGTCAAAGCTATTGTCATAGCCAGAGGTTGATAGATCTCACTAACCGGCAGTAGTCTAGGGATTGTTGCCTTTGGAAAGCACTCAAGTTCAAGTTCTATCGTTTAAGGAAACAATACTTCCCCTCCCTATACTTCCCCACTTCCTCGTTCACTTTTATCTCAAATCTTAAGTGATATGCTTTGTACCTCATTCACAACTATCTTGACAGTTTTTTCAAAGCATTATAAGGTTAGTGAGGGAGTTGTTGAATGTAAAATGTTGTAATATCTCAAAACTAAATCATGAACCCTTATCTTGAGTAGTGGAGTAGCACTTCCTTATTCAATTGCTTGATTCACGATCTTTGCTATTGAATTAATCCCCCATGTGTCGGGACCTGAACTTTGGTGGTGCTCTTCTATAGCTTCTTCAATTACATAGATAATAGCTCCTCTCCCTTCGGTCTCATTGCTTCACTCCTCTCCTTCTTTGTTGAAAACTGTTCTTTCACTCTATCTTCGTCTTCTCTCCTTTACTATTCTAAATCATAAGAAAAAAGAGAGACTCAACCGAAAACCTAAACCTCGACTTCTTTCGTCTCCCTTCTTTCATGAGGTAAAAGTAGCTATTTTTTTTCCTCTCGCTTCTTTCACTCGGTAAATAGGATATTAGTCTTTCTCCTTCAAAATCAAGTGTTTCAAGTCAAGACTCAACCGAAAACAAAAACTACCTTTACTAACTGTGACGGGCTTCAAAGACGGTACGATCAAAGGTTGTAAGATTATCACATGCAATAAGATCTATAGTTGGACTCTACTAACTAGAACTTGAATAGAAAAGCATTTGAAGGAAGGTTCGGTGGCCCTTTGTTTAGGACGAAAATCTTTAGGGACACCCGTTGGTTAAAAATGAGAGAGATCAAGAGCATATAGGTAAGAACTACATCTCCATTAAAAAACGAAACTAAGTGGACTGAGGTTAGGTTTGAAAGCACAACCATTAACGCAATATTTTAATATTGTGAAGATACGCAATACCTTTAAGGATTTGAATATCTTAAAAAGATGCCTACTTTTTCTATTGATCCAGCTTGAATTTTCTTCTGGTTTTCAGTCTGCAAGCCGGCTATCTCTGCGCCTGCTAAAATGGATCCATCTTTGGCTCTTGAGGCAGTGATGGGAGTGCGCAGAGCACAGCCAAAATGA

mRNA sequence

ATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGACTTCTTTAGAGCTCTTCCTCCTCCATTTGCGTTACTCGTTCACTTTGCGGGTAATGCTAGAGGCCCGGAGGAAAATAGAAAGAGCAGTCGGAGCTCTCTGCTTCTGAGTCACCTAGTCGGCGCCGCCACAACAAGAACCATGGGAAAGAAACCGTCTGGGTCCAAGCAAGCATTTTTCATCCTCGGAGCCTTGGCACTGGGTTGGCTAGCCATTGAGATGGCCTTCAAGCCCTTCCTCGATAAGGCCCGCTCCGCCATGGACAACTCTGATCCGACTCGGGATCCCGACGACCGTCCGATAAACAATCTGATCACTTACAATCGGACGACGATCGAAGTACCACTGCTTGAAGTCGCATCATCTTGTGGCGTCTGCAAGCCGGCTATCTCTGCGCCTGCTAAAATGGATCCATCTTTGGCTCTTGAGGCAGTGATGGGAGTGCGCAGAGCACAGCCAAAATGA

Coding sequence (CDS)

ATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACAGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTAGACACCGAGGGTCAAGCCGAAGAAACCAACTGCAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGACTTCTTTAGAGCTCTTCCTCCTCCATTTGCGTTACTCGTTCACTTTGCGGGTAATGCTAGAGGCCCGGAGGAAAATAGAAAGAGCAGTCGGAGCTCTCTGCTTCTGAGTCACCTAGTCGGCGCCGCCACAACAAGAACCATGGGAAAGAAACCGTCTGGGTCCAAGCAAGCATTTTTCATCCTCGGAGCCTTGGCACTGGGTTGGCTAGCCATTGAGATGGCCTTCAAGCCCTTCCTCGATAAGGCCCGCTCCGCCATGGACAACTCTGATCCGACTCGGGATCCCGACGACCGTCCGATAAACAATCTGATCACTTACAATCGGACGACGATCGAAGTACCACTGCTTGAAGTCGCATCATCTTGTGGCGTCTGCAAGCCGGCTATCTCTGCGCCTGCTAAAATGGATCCATCTTTGGCTCTTGAGGCAGTGATGGGAGTGCGCAGAGCACAGCCAAAATGA

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSRHRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDFFRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPINNLITYNRTTIEVPLLEVASSCGVCKPAISAPAKMDPSLALEAVMGVRRAQPK

Homology

[Close]

BLAST of Csor.00g154670 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.1e-25
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLS 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.7e-24
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. ExPASy Swiss-Prot
Match: O42661 (Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=smd1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-18
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKL NETVSIELKNGT+VHGTIT VD+ MNTHLKAVK+T+KG+ PV ++ LS 
Sbjct: 1  MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-18
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS 
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYFILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-18
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS 
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYFILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. NCBI nr
Match: KAG6571478.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 530 bits (1366), Expect = 9.68e-190
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
           HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF
Sbjct: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFIL 180
           FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFIL
Sbjct: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFIL 180

Query: 181 GALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPINNLITYNRTTIEVPLLEVASS 240
           GALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPINNLITYNRTTIEVPLLEVASS
Sbjct: 181 GALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPINNLITYNRTTIEVPLLEVASS 240

Query: 241 CGVCKPAISAPAKMDPSLALEAVMGVRRAQPK 272
           CGVCKPAISAPAKMDPSLALEAVMGVRRAQPK
Sbjct: 241 CGVCKPAISAPAKMDPSLALEAVMGVRRAQPK 272

[Close]

BLAST of Csor.00g154670 vs. NCBI nr
Match: KAG6606428.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (634), Expect = 7.83e-79
Identity = 147/224 (65.62%), Postives = 162/224 (72.32%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDD- 120
           H GSS RN LQGSLW VDED  VG VVVVDARFVAV S+F+  SVNTCI+ K  EFSD  
Sbjct: 61  HPGSSPRNLLQGSLWGVDEDEAVGVVVVVDARFVAV-SNFDLRSVNTCILGKVCEFSDVK 120

Query: 121 --FFRALPPPFALLVHFAGNARGPEENRKSSRSSLLL---SHLVGAATT--RTMGKKPSG 180
             +  +L     LL  ++      +          LL   S+++    T    MGKK S 
Sbjct: 121 MWYSNSLSDLICLLQCYSVVFSVIDVALLCGWDLPLLMIYSNIINNDQTLQEKMGKKQSD 180

Query: 181 SKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 216
           +KQA  + GALALGWLAIEMAFKP LD+ RSAMDN+DP RD DD
Sbjct: 181 TKQAAIVFGALALGWLAIEMAFKPILDRVRSAMDNADPARDTDD 223

[Close]

BLAST of Csor.00g154670 vs. NCBI nr
Match: KAF9686976.1 (hypothetical protein SADUNF_Sadunf02G0046000 [Salix dunnii])

HSP 1 Score: 160 bits (404), Expect = 8.80e-45
Identity = 105/217 (48.39%), Postives = 125/217 (57.60%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLT+KGKNPVT+DHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDA-RFVAVVSSFETGSVNTCIVAKDSEFSDD 120
            RG++ R  +      + + +++  ++V +  R      +  +G VNT   +K       
Sbjct: 61  -RGNNIRYYI------LPDSLNLETLLVEETPRVKPKKPTAASGYVNTLCCSK------- 120

Query: 121 FFRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFI 180
                                               +L        MG KP+  KQA F 
Sbjct: 121 ------------------------------------YLSQRLRREKMGMKPA--KQAVFA 165

Query: 181 LGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 216
            GALA GWLA E+AFKPFLDKARSA+D SDP RDPDD
Sbjct: 181 FGALAFGWLAFEIAFKPFLDKARSAVDKSDPARDPDD 165

[Close]

BLAST of Csor.00g154670 vs. NCBI nr
Match: KAD6120146.1 (hypothetical protein E3N88_11417 [Mikania micrantha])

HSP 1 Score: 160 bits (404), Expect = 1.91e-44
Identity = 101/221 (45.70%), Postives = 137/221 (61.99%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
            RG++ R  +      + + +++  ++V +   V                 +D +  +  
Sbjct: 61  -RGNNIRYYI------LPDSLNLETLLVEETPRV---------KPKKPTAGQDEQLKNYV 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGS-KQAFFI 180
            + + P    + H  G       +++++  ++L+     ++    M K  S   K A  +
Sbjct: 121 QKIVDPKLWSIEHGKGYL-----SKQATNGTVLVED---SSNRFVMAKGESTPLKSAVVV 180

Query: 181 LGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPIN 220
           +GALA GW AIE+AFKP+LDKAR++M+ SDPTRDPDD  I+
Sbjct: 181 IGALAFGWAAIELAFKPWLDKARTSMNKSDPTRDPDDADID 197

[Close]

BLAST of Csor.00g154670 vs. NCBI nr
Match: TXG63624.1 (hypothetical protein EZV62_010618 [Acer yangbiense])

HSP 1 Score: 158 bits (399), Expect = 3.78e-44
Identity = 101/216 (46.76%), Postives = 118/216 (54.63%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKAVKLTLKGKNPVT+DHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
              + R   L  SL                             ++ T +V +        
Sbjct: 61  RGNNIRYYILPDSL-----------------------------NLETLLVEETPRVKPKK 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFIL 180
             A P  + + ++  G   G +                         +   G K+A  + 
Sbjct: 121 PTAAPG-YVVNIYVVGEYVGGDL------------------------RDVKGMKRAVTVF 162

Query: 181 GALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 216
           GALALGWLAIE+A KPFLDKAR+AMD SDP RDPDD
Sbjct: 181 GALALGWLAIEIALKPFLDKARAAMDKSDPARDPDD 162

[Close]

BLAST of Csor.00g154670 vs. ExPASy TrEMBL
Match: A0A5N6PG97 (Small nuclear ribonucleoprotein Sm D1 OS=Mikania micrantha OX=192012 GN=E3N88_11417 PE=3 SV=1)

HSP 1 Score: 160 bits (404), Expect = 9.23e-45
Identity = 101/221 (45.70%), Postives = 137/221 (61.99%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
            RG++ R  +      + + +++  ++V +   V                 +D +  +  
Sbjct: 61  -RGNNIRYYI------LPDSLNLETLLVEETPRV---------KPKKPTAGQDEQLKNYV 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGS-KQAFFI 180
            + + P    + H  G       +++++  ++L+     ++    M K  S   K A  +
Sbjct: 121 QKIVDPKLWSIEHGKGYL-----SKQATNGTVLVED---SSNRFVMAKGESTPLKSAVVV 180

Query: 181 LGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPIN 220
           +GALA GW AIE+AFKP+LDKAR++M+ SDPTRDPDD  I+
Sbjct: 181 IGALAFGWAAIELAFKPWLDKARTSMNKSDPTRDPDDADID 197

[Close]

BLAST of Csor.00g154670 vs. ExPASy TrEMBL
Match: A0A5C7I3G1 (Small nuclear ribonucleoprotein Sm D1 OS=Acer yangbiense OX=1000413 GN=EZV62_010618 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.83e-44
Identity = 101/216 (46.76%), Postives = 118/216 (54.63%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKAVKLTLKGKNPVT+DHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
              + R   L  SL                             ++ T +V +        
Sbjct: 61  RGNNIRYYILPDSL-----------------------------NLETLLVEETPRVKPKK 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFIL 180
             A P  + + ++  G   G +                         +   G K+A  + 
Sbjct: 121 PTAAPG-YVVNIYVVGEYVGGDL------------------------RDVKGMKRAVTVF 162

Query: 181 GALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 216
           GALALGWLAIE+A KPFLDKAR+AMD SDP RDPDD
Sbjct: 181 GALALGWLAIEIALKPFLDKARAAMDKSDPARDPDD 162

[Close]

BLAST of Csor.00g154670 vs. ExPASy TrEMBL
Match: A0A1R3KD71 (Small nuclear ribonucleoprotein Sm D1 OS=Corchorus olitorius OX=93759 GN=COLO4_09117 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.59e-43
Identity = 102/220 (46.36%), Postives = 120/220 (54.55%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVV+GTITGVDISMNTHLK VKLTLKGKNPV++DHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVNGTITGVDISMNTHLKTVKLTLKGKNPVSLDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
              + R   L  S+                             ++ T +V +        
Sbjct: 61  RGNNIRYYILPDSI-----------------------------NLETLLVEETP------ 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRTMGKKPSGSKQAFFIL 180
            R  P                EE +++ +              R MGK  +  KQA  + 
Sbjct: 121 -RVKPK----------KPTAAEEEKRAKK--------------RKMGKSTA-MKQAAVVF 159

Query: 181 GALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPIN 220
           GALA GWLAIEMAFKPFLDKAR +MD SDP RDPDD  ++
Sbjct: 181 GALAFGWLAIEMAFKPFLDKARGSMDKSDPNRDPDDTDVH 159

[Close]

BLAST of Csor.00g154670 vs. ExPASy TrEMBL
Match: A0A484NMA3 (Small nuclear ribonucleoprotein Sm D1 OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS43888 PE=3 SV=1)

HSP 1 Score: 155 bits (392), Expect = 4.33e-43
Identity = 106/224 (47.32%), Postives = 120/224 (53.57%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
           MKLVRFLMKLNNETVSIELKNGTVV+GTITGVD+SMNTHLK VKLT KGKNPVTMDHLS 
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVNGTITGVDVSMNTHLKTVKLTPKGKNPVTMDHLSV 60

Query: 61  HRGSSRRNQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDDF 120
              + R   L  S+                        + ET  V      K  +     
Sbjct: 61  RGNNIRYYILPDSI------------------------NLETLLVEDTPKVKPKK----- 120

Query: 121 FRALPPPFALLVHFAGNARGPEENRKSSRSSLLLSHLVGAATTRT---MGKKPSGSKQAF 180
               P     L    G  RG    R  +R S  +       T      MG+K S  K A 
Sbjct: 121 ----PTAGKALGRGRGRGRGRGRGRGRNRVSKAIVQTTRFNTLELREKMGEKSS-LKSAA 180

Query: 181 FILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDDRPINN 221
            + GALA GWLAIE+AFKPFLDKAR+A+  SDP  DPDD   N+
Sbjct: 181 VVFGALAAGWLAIELAFKPFLDKARAALKKSDPNYDPDDATENS 190

[Close]

BLAST of Csor.00g154670 vs. ExPASy TrEMBL
Match: A0A6J1I3K7 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111469600 PE=3 SV=1)

HSP 1 Score: 117 bits (294), Expect = 1.18e-29
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLS 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSV 60

Query: 61 HRGSSRRNQLQGSL 74
             S R   L  SL
Sbjct: 61 RGNSIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-26
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLS 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-25
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-25
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSR 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS 
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 HRGSSRRNQLQGSL 75
             + R   L  SL
Sbjct: 61 RGNNIRYYILPDSL 74

[Close]

BLAST of Csor.00g154670 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-23
Identity = 60/84 (71.43%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61 NPVTMDHLSRHRGSSRRNQLQGSL 75
          NPVT+DHLS    + R   L  SL
Sbjct: 61 NPVTLDHLSVRGNNIRYYILPDSL 84

[Close]

BLAST of Csor.00g154670 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 75.1 bits (183), Expect = 9.7e-14
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 169 KPSGSKQAFFILGALALGWLAIEMAFKPFLDKARSAMDNSDPTRDPDD 217
           K SG+KQA  ++ A+ALGWLAIE+AFKPFLDK RS++D SDPT+DPDD
Sbjct: 3   KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSIDKSDPTKDPDD 50

The following BLAST results are available for this feature:

BLAST of Csor.00g154670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY09	9.1e-25	81.08	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
Q9SSF1	7.7e-24	78.38	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
O42661	1.3e-18	67.57	Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 /...	[more]
Q3ZC10	2.8e-18	67.57	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]
P62314	2.8e-18	67.57	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=...	[more]

BLAST of Csor.00g154670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571478.1	9.68e-190	100.00	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6606428.1	7.83e-79	65.63	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
KAF9686976.1	8.80e-45	48.39	hypothetical protein SADUNF_Sadunf02G0046000 [Salix dunnii]	[more]
KAD6120146.1	1.91e-44	45.70	hypothetical protein E3N88_11417 [Mikania micrantha]	[more]
TXG63624.1	3.78e-44	46.76	hypothetical protein EZV62_010618 [Acer yangbiense]	[more]

BLAST of Csor.00g154670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6PG97	9.23e-45	45.70	Small nuclear ribonucleoprotein Sm D1 OS=Mikania micrantha OX=192012 GN=E3N88_11...	[more]
A0A5C7I3G1	1.83e-44	46.76	Small nuclear ribonucleoprotein Sm D1 OS=Acer yangbiense OX=1000413 GN=EZV62_010...	[more]
A0A1R3KD71	3.59e-43	46.36	Small nuclear ribonucleoprotein Sm D1 OS=Corchorus olitorius OX=93759 GN=COLO4_0...	[more]
A0A484NMA3	4.33e-43	47.32	Small nuclear ribonucleoprotein Sm D1 OS=Cuscuta campestris OX=132261 GN=CCAM_LO...	[more]
A0A6J1I3K7	1.18e-29	85.14	Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11146960...	[more]

BLAST of Csor.00g154670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02840.1	6.5e-26	81.08	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	5.5e-25	78.38	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	5.5e-25	78.38	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	1.8e-23	71.43	Small nuclear ribonucleoprotein family protein	[more]
AT3G52420.1	9.7e-14	70.83	outer envelope membrane protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..99 e-value: 8.5E-5 score: 31.9
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 5..56 e-value: 3.4E-12 score: 45.9
None	No IPR available	GENE3D	2.30.30.100		coord: 1..84 e-value: 2.9E-20 score: 74.4
None	No IPR available	PANTHER	PTHR23338:SF39	SMALL NUCLEAR RIBONUCLEOPROTEIN SMD1B	coord: 1..65
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..65
IPR034102	Small nuclear ribonucleoprotein D1	CDD	cd01724	Sm_D1	coord: 2..67 e-value: 1.34638E-39 score: 131.193
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g154670.m01	Csor.00g154670.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0006396	RNA processing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding