Csor.00g154420 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g154420
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 465093 .. 465380 (-)
RNA-Seq ExpressionCsor.00g154420
SyntenyCsor.00g154420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCGCTTTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGAGGATCGACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCACTTCAAAGAGCTCCGGTCCCTCCCTCTGCCAAAAATGGCGGCACGACTATTCCGGTACCGCTTGGGCAAAGATCTTTCGTCGGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAACACGAACTAA

mRNA sequence

ATGAAGATCCAATTCGCTTTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGAGGATCGACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCACTTCAAAGAGCTCCGGTCCCTCCCTCTGCCAAAAATGGCGGCACGACTATTCCGGTACCGCTTGGGCAAAGATCTTTCGTCGGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAACACGAACTAA

Coding sequence (CDS)

ATGAAGATCCAATTCGCTTTCCTTTTGGCCATTTTGGTTGTTCTTGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGAGGATCGACAAAAATGGTCCATCCTTCTTCTTCAGCAGTCACTTCAAAGAGCTCCGGTCCCTCCCTCTGCCAAAAATGGCGGCACGACTATTCCGGTACCGCTTGGGCAAAGATCTTTCGTCGGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAACACGAACTAA

Protein sequence

MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIPVPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN
Homology
BLAST of Csor.00g154420 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190 bits (482), Expect = 9.26e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95
          VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN
Sbjct: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of Csor.00g154420 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (455), Expect = 1.22e-56
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSL+R PVPPSA+NGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95
            LGQR+FVGKSTPSPAHSYHHQVPVPFGVAMNTN
Sbjct: 61 TQLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of Csor.00g154420 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 1.38e-55
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAI+V+LANAHQLQSCRTMK+DRQKWSILL QQSLQRAPVPPSAKNGGTTIP
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILL-QQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95
          VPLGQR+FVGKSTPSPAHSYHHQVPVPFGVAM TN
Sbjct: 61 VPLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94

BLAST of Csor.00g154420 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (441), Expect = 1.72e-54
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAILVVLANAHQLQSCRTMKED QKWSILLLQQSLQRAPVPP+AKNGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVA-MNTN 95
           PLGQR+FVGKSTPSPAHSYHHQVPVP GVA M TN
Sbjct: 61 TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 96

BLAST of Csor.00g154420 vs. NCBI nr
Match: KAG6571502.1 (hypothetical protein SDJN03_28230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (403), Expect = 1.01e-48
Identity = 84/96 (87.50%), Postives = 87/96 (90.62%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAILVVLANAHQLQSCRTMKED QKWSIL  Q+SLQ APVPP+AKNGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSIL--QRSLQSAPVPPNAKNGGTTIP 60

Query: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVA-MNTN 95
           P GQR+FVGKSTPSPAHSYHHQVPVP GVA M TN
Sbjct: 61 TPPGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 94

BLAST of Csor.00g154420 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 4.68e-34
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60
          MKIQF F  AILV+LANAH LQSCRTMK+D++KWS+L+ QQSLQRAPVPPS ++G T IP
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLI-QQSLQRAPVPPSTRDGDTNIP 60

Query: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95
          VPLGQ++F GKST  PA      + VP GVA+ TN
Sbjct: 61 VPLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

BLAST of Csor.00g154420 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 4.93e-31
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSI--LLLQQSLQRAPVPPSAKNGGTT 60
          MKIQF+FLLAILV+LAN H LQSCRT+K+D+Q WSI   LLQQSLQR PVPPSAKNG T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQRSFVGKSTPSPAHSY 80
          IPVP+GQR+F GK++ + A +Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

BLAST of Csor.00g154420 vs. ExPASy TrEMBL
Match: A0A7J7CYF4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.63e-05
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 0

Query: 8  LLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIPVPLG--- 67
          L+ + ++L   ++ Q+ R + +D    ++L+L QSLQR PV PS  NG T IP   G   
Sbjct: 15 LMILQILLMQPNEAQASRVLDQD----NVLML-QSLQRGPVRPSGPNGCTYIPGRGGAPC 74

Query: 68 --QRSFVGKSTPSPAHSYHHQVPVPFGVAMN 93
            QR F G++  +P ++Y   + VPFGVA N
Sbjct: 75 TSQRGFAGRAVAAP-NAYPDNLMVPFGVAAN 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571503.19.26e-61100.00hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571501.11.22e-5693.68hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571505.11.38e-5593.68hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.11.72e-5492.71hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571502.11.01e-4887.50hypothetical protein SDJN03_28230, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3B7774.68e-3466.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY54.93e-3170.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A7J7CYF41.63e-0538.46Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g154420.m01Csor.00g154420.m01mRNA