Csor.00g154400 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g154400
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr19: 472447 .. 472731 (-)
RNA-Seq ExpressionCsor.00g154400
SyntenyCsor.00g154400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTTGCTTTCCTTTTGGCCATTGTGGTTCTTCTAGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGACGATCGACAAAAATGGTCCATCCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCAAAAATGGCGGCACGACTATTCCGGTACCGCTCGGGCAAAGAGCTTTCGTCGGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

mRNA sequence

ATGAAGATCCAATTTGCTTTCCTTTTGGCCATTGTGGTTCTTCTAGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGACGATCGACAAAAATGGTCCATCCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCAAAAATGGCGGCACGACTATTCCGGTACCGCTCGGGCAAAGAGCTTTCGTCGGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

Coding sequence (CDS)

ATGAAGATCCAATTTGCTTTCCTTTTGGCCATTGTGGTTCTTCTAGCCAACGCTCATCAGCTCCAAAGTTGCAGAACCATGAAAGACGATCGACAAAAATGGTCCATCCTTCTTCAGCAGTCTCTTCAGAGAGCTCCGGTTCCTCCCTCTGCCAAAAATGGCGGCACGACTATTCCGGTACCGCTCGGGCAAAGAGCTTTCGTCGGAAAATCCACGCCCTCGCCGGCACACAGCTACCATCATCAAGTTCCTGTTCCTTTTGGTGTGGCCATGAAGACGAACTAA

Protein sequence

MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPVPLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN
Homology
BLAST of Csor.00g154400 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (476), Expect = 7.09e-60
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60
          MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60

Query: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94
          PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN
Sbjct: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94

BLAST of Csor.00g154400 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176 bits (446), Expect = 2.76e-55
Identity = 89/95 (93.68%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILL-QQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAI+V+LANAHQLQSCRTMK+DRQKWSILL QQSLQRAPVPPSAKNGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94
          VPLGQR+FVGKSTPSPAHSYHHQVPVPFGVAM TN
Sbjct: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of Csor.00g154400 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168 bits (425), Expect = 4.42e-52
Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILL-QQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAI+V+LANAHQLQSCRTMK+DRQKWSILL QQSL+R PVPPSA+NGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 61 VPLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94
            LGQRAFVGKSTPSPAHSYHHQVPVPFGVAM TN
Sbjct: 61 TQLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMNTN 95

BLAST of Csor.00g154400 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (422), Expect = 1.31e-51
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILL-QQSLQRAPVPPSAKNGGTTIP 60
          MKIQFAFLLAI+V+LANAHQLQSCRTMK+D QKWSILL QQSLQRAPVPP+AKNGGTTIP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPLGQRAFVGKSTPSPAHSYHHQVPVPFGVA-MKTN 94
           PLGQRAFVGKSTPSPAHSYHHQVPVP GVA MKTN
Sbjct: 61 TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 96

BLAST of Csor.00g154400 vs. NCBI nr
Match: KAG6571502.1 (hypothetical protein SDJN03_28230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159 bits (401), Expect = 1.96e-48
Identity = 83/95 (87.37%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60
          MKIQFAFLLAI+V+LANAHQLQSCRTMK+D QKWSIL Q+SLQ APVPP+AKNGGTTIP 
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSIL-QRSLQSAPVPPNAKNGGTTIPT 60

Query: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVA-MKTN 94
          P GQRAFVGKSTPSPAHSYHHQVPVP GVA MKTN
Sbjct: 61 PPGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKTN 94

BLAST of Csor.00g154400 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 2.00e-37
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60
          MKIQF F  AI+VLLANAH LQSCRTMKDD++KWS+L+QQSLQRAPVPPS ++G T IPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVAMKTN 94
          PLGQ+AF GKST  PA      + VP GVA+KTN
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVALKTN 94

BLAST of Csor.00g154400 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 5.77e-32
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSI---LLQQSLQRAPVPPSAKNGGTT 60
          MKIQF+FLLAI+VLLAN H LQSCRT+KDD+Q WSI   LLQQSLQR PVPPSAKNG T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQRAFVGKSTPSPAHSY 79
          IPVP+GQRAF GK++ + A +Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

BLAST of Csor.00g154400 vs. ExPASy TrEMBL
Match: A0A7J7CYF4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.58e-05
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 8  LLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPVPLG---- 67
          L+ + +LL   ++ Q+ R +  D    ++L+ QSLQR PV PS  NG T IP   G    
Sbjct: 15 LMILQILLMQPNEAQASRVLDQD----NVLMLQSLQRGPVRPSGPNGCTYIPGRGGAPCT 74

Query: 68 -QRAFVGKSTPSPAHSYHHQVPVPFGVA 90
           QR F G++  +P ++Y   + VPFGVA
Sbjct: 75 SQRGFAGRAVAAP-NAYPDNLMVPFGVA 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571505.17.09e-60100.00hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.12.76e-5593.68hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571501.14.42e-5289.47hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.11.31e-5190.63hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571502.11.96e-4887.37hypothetical protein SDJN03_28230, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3B7772.00e-3770.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY55.77e-3273.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A7J7CYF41.58e-0538.64Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00102 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g154400.m01Csor.00g154400.m01mRNA