Csor.00g153750 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g153750
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein LATE FLOWERING-like
LocationCsor_Chr19: 978103 .. 978447 (-)
RNA-Seq ExpressionCsor.00g153750
SyntenyCsor.00g153750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGATTACGCACCCTCCGAGTCGCCATCCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCGCTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATCTACATTGCTGCTAGTGCTCCTAATCTTCATTGTTTCCCCAATAATCCACCTTTGTTCTATGAACACATGGGGTACTATGGTGGCCTTTGTTCAACCAATAGATATCATCATCATCATCATCAATATGGGGTGGAAGATGAACAAAAGGTGTTGAATTGGCAGAGAAACATTCAGAATGATAACAAAAAAGAACAAAAACTTGATCTTTCCCTTCATTTATAG

mRNA sequence

ATGTCCGATTACGCACCCTCCGAGTCGCCATCCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCGCTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATCTACATTGCTGCTAGTGCTCCTAATCTTCATTGTTTCCCCAATAATCCACCTTTGTTCTATGAACACATGGGGTACTATGGTGGCCTTTGTTCAACCAATAGATATCATCATCATCATCATCAATATGGGGTGGAAGATGAACAAAAGGTGTTGAATTGGCAGAGAAACATTCAGAATGATAACAAAAAAGAACAAAAACTTGATCTTTCCCTTCATTTATAG

Coding sequence (CDS)

ATGTCCGATTACGCACCCTCCGAGTCGCCATCCCCCTCCTCCCCCTCCTCCTCCTCCTCCTCCTCGCTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATCTACATTGCTGCTAGTGCTCCTAATCTTCATTGTTTCCCCAATAATCCACCTTTGTTCTATGAACACATGGGGTACTATGGTGGCCTTTGTTCAACCAATAGATATCATCATCATCATCATCAATATGGGGTGGAAGATGAACAAAAGGTGTTGAATTGGCAGAGAAACATTCAGAATGATAACAAAAAAGAACAAAAACTTGATCTTTCCCTTCATTTATAG

Protein sequence

MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL
Homology
BLAST of Csor.00g153750 vs. NCBI nr
Match: KAG6571570.1 (hypothetical protein SDJN03_28298, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232 bits (592), Expect = 6.15e-77
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF 60
           MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF
Sbjct: 1   MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF 60

Query: 61  YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114
           YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL
Sbjct: 61  YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114

BLAST of Csor.00g153750 vs. NCBI nr
Match: XP_022967643.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 190 bits (482), Expect = 1.91e-59
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 0

Query: 1   MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF 60
           +SDYA SESP   SPSSSSSSS+FAATHHQTHHPGLYPHP+YIA +A NLHCFPNNPPLF
Sbjct: 57  ISDYAASESP---SPSSSSSSSVFAATHHQTHHPGLYPHPMYIANAA-NLHCFPNNPPLF 116

Query: 61  YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114
           YEHMGYYGG+CS+NRYHHHH QYGVEDEQ VLNWQRNI+ND KKEQKLDLSLHL
Sbjct: 117 YEHMGYYGGVCSSNRYHHHH-QYGVEDEQNVLNWQRNIKNDKKKEQKLDLSLHL 165

BLAST of Csor.00g153750 vs. NCBI nr
Match: XP_023511523.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (466), Expect = 5.04e-57
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0

Query: 1   MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF 60
           +SDYAPSESPSPSS  SSSSSS+FAATHHQTHHPG YPHP+YIA +A NLHCFPNNPPLF
Sbjct: 57  ISDYAPSESPSPSS--SSSSSSVFAATHHQTHHPGPYPHPMYIANAA-NLHCFPNNPPLF 116

Query: 61  YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114
           YEH+GYY G+CS+NRYHH   QYGVEDEQK LNWQRNI+NDNKK+QKLDLSLHL
Sbjct: 117 YEHIGYYAGVCSSNRYHH---QYGVEDEQKALNWQRNIKNDNKKQQKLDLSLHL 164

BLAST of Csor.00g153750 vs. NCBI nr
Match: KAG7011312.1 (hypothetical protein SDJN02_26216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156 bits (395), Expect = 5.41e-47
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 4   YAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEH 63
           + PS  P P S SSSSSSSLFAATHHQTHHPGLYPHP+YIAASAPNLHCFPNNPPLFYEH
Sbjct: 20  HPPSRHPPPPS-SSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEH 79

Query: 64  MGYYGGLCSTNRYHHHHHQYGVEDEQKV 91
           MGYYGGLCSTNRYHHHH QYGVEDEQK+
Sbjct: 80  MGYYGGLCSTNRYHHHH-QYGVEDEQKI 105

BLAST of Csor.00g153750 vs. NCBI nr
Match: KAA0066236.1 (protein LATE FLOWERING-like [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 2.92e-27
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0

Query: 11  SPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEHMGYYGGL 70
           SP SP S+ +S +FAA+  Q H  GL PHP+YIA    NLHCFPNN  L YE+M + GG+
Sbjct: 50  SPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYIATHGANLHCFPNNQQLLYENMVFCGGV 109

Query: 71  CSTNRYHHHHHQYGVEDEQKVLNWQRNIQND-------NKKEQKLDLSLHL 114
           CS+NRYH        +DE+ +LNW+RNI+ND        +KEQKLDLSLHL
Sbjct: 110 CSSNRYH--------QDEENLLNWERNIKNDLSRINHDKEKEQKLDLSLHL 152

BLAST of Csor.00g153750 vs. ExPASy TrEMBL
Match: A0A6J1HVN7 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111467088 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 9.25e-60
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 0

Query: 1   MSDYAPSESPSPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLF 60
           +SDYA SESP   SPSSSSSSS+FAATHHQTHHPGLYPHP+YIA +A NLHCFPNNPPLF
Sbjct: 57  ISDYAASESP---SPSSSSSSSVFAATHHQTHHPGLYPHPMYIANAA-NLHCFPNNPPLF 116

Query: 61  YEHMGYYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114
           YEHMGYYGG+CS+NRYHHHH QYGVEDEQ VLNWQRNI+ND KKEQKLDLSLHL
Sbjct: 117 YEHMGYYGGVCSSNRYHHHH-QYGVEDEQNVLNWQRNIKNDKKKEQKLDLSLHL 165

BLAST of Csor.00g153750 vs. ExPASy TrEMBL
Match: A0A5A7VIQ7 (Protein LATE FLOWERING-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002620 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 1.41e-27
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0

Query: 11  SPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEHMGYYGGL 70
           SP SP S+ +S +FAA+  Q H  GL PHP+YIA    NLHCFPNN  L YE+M + GG+
Sbjct: 50  SPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYIATHGANLHCFPNNQQLLYENMVFCGGV 109

Query: 71  CSTNRYHHHHHQYGVEDEQKVLNWQRNIQND-------NKKEQKLDLSLHL 114
           CS+NRYH        +DE+ +LNW+RNI+ND        +KEQKLDLSLHL
Sbjct: 110 CSSNRYH--------QDEENLLNWERNIKNDLSRINHDKEKEQKLDLSLHL 152

BLAST of Csor.00g153750 vs. ExPASy TrEMBL
Match: A0A1S3BIU8 (protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 2.85e-27
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 0

Query: 11  SPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEHMGYYGGL 70
           SP SP S+ +S +FAA+  Q H  GL PHP+YIA    NLHCFPNN  L YE+M + GG+
Sbjct: 76  SPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYIATHGANLHCFPNNQQLLYENMVFCGGV 135

Query: 71  CSTNRYHHHHHQYGVEDEQKVLNWQRNIQND-------NKKEQKLDLSLHL 114
           CS+NRYH        +DE+ +LNW+RNI+ND        +KEQKLDLSLHL
Sbjct: 136 CSSNRYH--------QDEENLLNWERNIKNDLSRINHDKEKEQKLDLSLHL 178

BLAST of Csor.00g153750 vs. ExPASy TrEMBL
Match: A0A6J1ETH7 (protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.38e-26
Identity = 64/114 (56.14%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 16  SSSSSSSLFA------ATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEHMG---- 75
           SSSSSSSL +      A + Q HHP + PHP+YIAA   NLHCFPNN  +FY+ +G    
Sbjct: 65  SSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPNNQQVFYDGLGVVPK 124

Query: 76  -----YYGGLCSTNRYHHHHHQYGVEDEQKVLNWQRNIQNDNKKEQKLDLSLHL 114
                YYGG+CS NRY     Q G EDE  VLNWQR+I+ D +KEQKLDLSLHL
Sbjct: 125 FEDMVYYGGVCSYNRY-----QCG-EDEDHVLNWQRSIKKDKEKEQKLDLSLHL 172

BLAST of Csor.00g153750 vs. ExPASy TrEMBL
Match: A0A0A0LE19 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.57e-26
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = 0

Query: 11  SPSSPSSSSSSSLFAATHHQTHHPGLYPHPIYIAASAPNLHCFPNNPPLFYEHMGYYGGL 70
           SP SP  + +S +FAA+  Q HHPGL PHP+YIA    NLHCFPNN  L YE+M + GG+
Sbjct: 50  SPPSPFPAPTSLVFAASQQQ-HHPGLLPHPVYIATHGANLHCFPNNQQLLYENMVFCGGV 109

Query: 71  CSTNRYHHHHHQYGVEDEQKVLNWQRNIQ-------NDNKKEQKLDLSLHL 114
           C +NRYH        +DE+ +LNW+RNI+       +D +KEQKLDLSLHL
Sbjct: 110 CPSNRYH--------QDEENLLNWERNIKKDLSRINHDKEKEQKLDLSLHL 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571570.16.15e-77100.00hypothetical protein SDJN03_28298, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022967643.11.91e-5985.96protein LATE FLOWERING-like [Cucurbita maxima][more]
XP_023511523.15.04e-5783.33protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo][more]
KAG7011312.15.41e-4788.64hypothetical protein SDJN02_26216, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0066236.12.92e-2754.05protein LATE FLOWERING-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1HVN79.25e-6085.96protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111467088 PE=4 SV=... [more]
A0A5A7VIQ71.41e-2754.05Protein LATE FLOWERING-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A1S3BIU82.85e-2754.05protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1[more]
A0A6J1ETH71.38e-2656.14protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1[more]
A0A0A0LE191.57e-2653.15C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g153750.m01Csor.00g153750.m01mRNA