Csor.00g153620 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g153620
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPPPDE domain-containing protein
LocationCsor_Chr19: 1171580 .. 1173183 (+)
RNA-Seq ExpressionCsor.00g153620
SyntenyCsor.00g153620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTTGTGTTTGCAACCTCACAATGCAAGGAGTCTCACAGAGTTGTATTGAATCTATACGACCTCAGCCGCGGATCGGCTCGACAGTTCTTGACAACATTGTTAGGGAAACCCATTAAAGGCATATGGTAAGTGCTGAACTTTGCTAAGATATTATGTTGCTTGGTACCCAATTAAAAGAGTAGTATATGGATAAACTGAGACTACATCGAATTGAAAGCGTTTTTAAAGATATGAAATTATGGTTAAGAAATGTGTAAAAGTATTGATAGTTACTGTAACGGCTCAAGCCCACCACTAGTAGATATTGTCCTCTTTGGGCTTTTCCTTTCGAGCTTCCCTTTAAGGTCCACCACTAGTAGATATTGTCCTCTTTGGGCTTTTCCTTTCGAGCTTCCCTTCAAGGTTTTTAAAACGCGACTACTAGGGAGAGATTTCCACACCCTTATAAAGAATGCTTCATTCTCCTCAACCAATATCGGATCTCATAGTTACTACTCATACTAACAAGTTGTACCATTCTTTTTTAGGTAGTTCAATCATATGAACTCTAAAGTTGAGTATGTTTAACTTGGAGGTATGTAGGATGTAATAGTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTCGGTTTTCCCTTTCGGACTTTCCTTCAAAGTTTTTAAAACATGTCTATTAAGGAAAGGTTTCCACACCCTTATAAAGAATATTTCGTTCCCCTCTCCAACCAATGTGGGATCTCACATAGGATGACCTCTTGAAAATTTCCTAAAAATCATGTGAGTGAGATAATACATGCGAAAATGACACGTGTTGGTTTGTGACTATAGTTTTCGCACTTGGAAGTGGTTCAAGACAAGTAAGAACATAGTCATATCGCGGTAGACGTAGGAGAATGTCAGGACCATCAGGTGCCAAATTCAAATTCTAAATCTTGGTCTGAATCCTAAGAAATTTACATGTATATTTTGATGAGTTGATCTTATGAATCAAGTCTCCTTTACGAAAAGTTCGGGCATTATAAATTGTGCTACTGTTGCGATAGCACTAGATAGTCTTTTCTTACTTGAACTGGTGTTAGGACAATGAACACTACTTGTCTCTACATTAGTAATGTCGATTTTTGTTGATGAAGTATCGCATGATATCGCTTTCTTGCAAATTCTCACTCCAAAGTCGATTTAAGCATAACTTAACTAGTTAAAGTATATATCCTTAACCGAGTGGTCAGACATTCAAATTCTCACACGTTGAACTCAACGTTACACTGATTTTGTGAGTGGTTGATTCTCTTATGCATTTCAGCTGAAACTTACAGCTTGTTGGGTCACGATTGCAACAACTTTAGTAATGAGGTTGATCAGCCTTTGGTTGGCTCGACCATCCCTGAGTATATTCTTCAGCTTCCCAGCGAAGTTAGCAGCAGTCCCGTCGGTAGACTCGTGCGTAAGTCGGGATAGAGATAACAATCATAGATTCTTTTTAGTCGATACATCTATTATTTATTCGTGGTAATGTTCGTTGTATTGACCGTGTCGATGATTCAGAATCTCAAAACAATGTTAAGATCGGGGGTAGTCCTGAAAGTTCCACAGGATAG

mRNA sequence

ATGTTGTTTGTGTTTGCAACCTCACAATGCAAGGAGTCTCACAGAGTTGTATTGAATCTATACGACCTCAGCCGCGGATCGGCTCGACAGTTCTTGACAACATTGTTAGGGAAACCCATTAAAGGCATATGCTTGTTGGGTCACGATTGCAACAACTTTAGTAATGAGGTTGATCAGCCTTTGGTTGGCTCGACCATCCCTGAGTATATTCTTCAGCTTCCCAGCGAAGTTAGCAGCAGTCCCGTCGGTAGACTCGTGCAATCTCAAAACAATGTTAAGATCGGGGGTAGTCCTGAAAGTTCCACAGGATAG

Coding sequence (CDS)

ATGTTGTTTGTGTTTGCAACCTCACAATGCAAGGAGTCTCACAGAGTTGTATTGAATCTATACGACCTCAGCCGCGGATCGGCTCGACAGTTCTTGACAACATTGTTAGGGAAACCCATTAAAGGCATATGCTTGTTGGGTCACGATTGCAACAACTTTAGTAATGAGGTTGATCAGCCTTTGGTTGGCTCGACCATCCCTGAGTATATTCTTCAGCTTCCCAGCGAAGTTAGCAGCAGTCCCGTCGGTAGACTCGTGCAATCTCAAAACAATGTTAAGATCGGGGGTAGTCCTGAAAGTTCCACAGGATAG

Protein sequence

MLFVFATSQCKESHRVVLNLYDLSRGSARQFLTTLLGKPIKGICLLGHDCNNFSNEVDQPLVGSTIPEYILQLPSEVSSSPVGRLVQSQNNVKIGGSPESSTG
Homology
BLAST of Csor.00g153620 vs. ExPASy Swiss-Prot
Match: Q6GLM5 (Desumoylating isopeptidase 1 OS=Xenopus laevis OX=8355 GN=desi1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 45  LLGHDCNNFSNEVDQPLVGSTIPEYILQLPSEVSSSPVGRLVQ 88
           L  H+CN FSNEV Q L G  IP YI +LPSEV S+P+G+ ++
Sbjct: 104 LFDHNCNTFSNEVAQFLTGKKIPSYITELPSEVLSTPLGQALR 146

BLAST of Csor.00g153620 vs. ExPASy Swiss-Prot
Match: Q6ICB0 (Desumoylating isopeptidase 1 OS=Homo sapiens OX=9606 GN=DESI1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-06
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 45  LLGHDCNNFSNEVDQPLVGSTIPEYILQLPSEVSSSPVGRLVQ 88
           L  H+CN FSNEV Q L G  IP YI  LPSEV S+P G+ ++
Sbjct: 103 LFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALR 145

BLAST of Csor.00g153620 vs. ExPASy Swiss-Prot
Match: Q9CQT7 (Desumoylating isopeptidase 1 OS=Mus musculus OX=10090 GN=Desi1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-06
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 45  LLGHDCNNFSNEVDQPLVGSTIPEYILQLPSEVSSSPVGRLVQ 88
           L  H+CN FSNEV Q L G  IP YI  LPSEV S+P G+ ++
Sbjct: 103 LFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALR 145

BLAST of Csor.00g153620 vs. ExPASy Swiss-Prot
Match: Q4KM30 (Desumoylating isopeptidase 1 OS=Rattus norvegicus OX=10116 GN=Desi1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-06
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 45  LLGHDCNNFSNEVDQPLVGSTIPEYILQLPSEVSSSPVGRLVQ 88
           L  H+CN FSNEV Q L G  IP YI  LPSEV S+P G+ ++
Sbjct: 103 LFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQALR 145

BLAST of Csor.00g153620 vs. NCBI nr
Match: KAG6571583.1 (Desumoylating isopeptidase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (523), Expect = 9.21e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MLFVFATSQCKESHRVVLNLYDLSRGSARQFLTTLLGKPIKGICLLGHDCNNFSNEVDQP 60
           MLFVFATSQCKESHRVVLNLYDLSRGSARQFLTTLLGKPIKGICLLGHDCNNFSNEVDQP
Sbjct: 1   MLFVFATSQCKESHRVVLNLYDLSRGSARQFLTTLLGKPIKGICLLGHDCNNFSNEVDQP 60

Query: 61  LVGSTIPEYILQLPSEVSSSPVGRLVQSQNNVKIGGSPESSTG 103
           LVGSTIPEYILQLPSEVSSSPVGRLVQSQNNVKIGGSPESSTG
Sbjct: 61  LVGSTIPEYILQLPSEVSSSPVGRLVQSQNNVKIGGSPESSTG 103

BLAST of Csor.00g153620 vs. NCBI nr
Match: KAG7011326.1 (Desumoylating isopeptidase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168 bits (425), Expect = 2.55e-51
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0

Query: 1  MLFVFATSQCKESHRVVLNLYDLSRGSARQFLTTLLGKPIKGICLLGHDCNNFSNEVDQP 60
          MLFVFATSQCKESHRVVLNLYDLSRGSARQF TTLLGKPIKGICLL HDCNNFSNEVDQP
Sbjct: 1  MLFVFATSQCKESHRVVLNLYDLSRGSARQFSTTLLGKPIKGICLLSHDCNNFSNEVDQP 60

Query: 61 LVGSTIPEYILQLPSEVSSSPVGRL 85
          LVGSTIPEYILQLPSEVSSSPVGRL
Sbjct: 61 LVGSTIPEYILQLPSEVSSSPVGRL 85

BLAST of Csor.00g153620 vs. NCBI nr
Match: XP_022156073.1 (desumoylating isopeptidase 1 isoform X2 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 3.75e-22
Identity = 61/139 (43.88%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLSRG ARQF  TLLGKP++GI                           
Sbjct: 3   EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIWHTGIVVYGNEYYYGAGIQQTLSGNTP 62

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LLGH+CNNFSNEV Q LVGSTIP
Sbjct: 63  FGTPICVMELGFTHVPEDVFEAYLIEISPRYTAETYSLLGHNCNNFSNEVAQFLVGSTIP 122

BLAST of Csor.00g153620 vs. NCBI nr
Match: XP_022156051.1 (desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156057.1 desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156064.1 desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156068.1 desumoylating isopeptidase 1 isoform X1 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 4.95e-22
Identity = 61/139 (43.88%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLSRG ARQF  TLLGKP++GI                           
Sbjct: 3   EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIWHTGIVVYGNEYYYGAGIQQTLSGNTP 62

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LLGH+CNNFSNEV Q LVGSTIP
Sbjct: 63  FGTPICVMELGFTHVPEDVFEAYLIEISPRYTAETYSLLGHNCNNFSNEVAQFLVGSTIP 122

BLAST of Csor.00g153620 vs. NCBI nr
Match: XP_038887396.1 (desumoylating isopeptidase 1 [Benincasa hispida] >XP_038887397.1 desumoylating isopeptidase 1 [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 2.75e-20
Identity = 61/139 (43.88%), Postives = 67/139 (48.20%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLS G ARQF   LLGKPI+GI                           
Sbjct: 4   EESHRVVLNLYDLSCGLARQFSKPLLGKPIEGIWHTGIVVYDNEYYFGGGIYHSHSGNTP 63

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LLGH+CNNFSNEV Q LVGSTIP
Sbjct: 64  FGTPIGVIDLGITHIPKDVFESYLIEISPRYTAETYSLLGHNCNNFSNEVAQFLVGSTIP 123

BLAST of Csor.00g153620 vs. ExPASy TrEMBL
Match: A0A6J1DPL9 (desumoylating isopeptidase 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023019 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.81e-22
Identity = 61/139 (43.88%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLSRG ARQF  TLLGKP++GI                           
Sbjct: 3   EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIWHTGIVVYGNEYYYGAGIQQTLSGNTP 62

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LLGH+CNNFSNEV Q LVGSTIP
Sbjct: 63  FGTPICVMELGFTHVPEDVFEAYLIEISPRYTAETYSLLGHNCNNFSNEVAQFLVGSTIP 122

BLAST of Csor.00g153620 vs. ExPASy TrEMBL
Match: A0A6J1DPL4 (desumoylating isopeptidase 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023019 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.39e-22
Identity = 61/139 (43.88%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLSRG ARQF  TLLGKP++GI                           
Sbjct: 3   EESHRVVLNLYDLSRGLARQFSATLLGKPMEGIWHTGIVVYGNEYYYGAGIQQTLSGNTP 62

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LLGH+CNNFSNEV Q LVGSTIP
Sbjct: 63  FGTPICVMELGFTHVPEDVFEAYLIEISPRYTAETYSLLGHNCNNFSNEVAQFLVGSTIP 122

BLAST of Csor.00g153620 vs. ExPASy TrEMBL
Match: A0A0A0L8S4 (PPPDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G627710 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.76e-20
Identity = 61/139 (43.88%), Postives = 67/139 (48.20%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLS G ARQF T LLGK I+GI                           
Sbjct: 4   EESHRVVLNLYDLSCGLARQFSTALLGKAIEGIWHTGIVVYDNEYYYGGGIYHSLSGNTP 63

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LLGH+CNNFSNEV Q LVGSTIP
Sbjct: 64  FGTPIHVIDLGITHVPKDVFETYLTEISPRYTAESYSLLGHNCNNFSNEVAQFLVGSTIP 123

BLAST of Csor.00g153620 vs. ExPASy TrEMBL
Match: A0A1S3CMZ0 (desumoylating isopeptidase 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502756 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.50e-18
Identity = 58/139 (41.73%), Postives = 66/139 (47.48%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLS G ARQF T L+GK I+GI                           
Sbjct: 4   EESHRVVLNLYDLSCGLARQFSTALMGKAIEGIWHTGIVVYDNEYYYGSGIYHSLSGNTP 63

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LL H+CNNFSNEV Q LVGSTIP
Sbjct: 64  FGTPIHVIDLGITHVPKDVFETYLTEISPRYTAETYSLLAHNCNNFSNEVAQFLVGSTIP 123

BLAST of Csor.00g153620 vs. ExPASy TrEMBL
Match: E5GB95 (PPPDE domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.50e-18
Identity = 58/139 (41.73%), Postives = 66/139 (47.48%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGI--------------------------- 70
           +ESHRVVLNLYDLS G ARQF T L+GK I+GI                           
Sbjct: 4   EESHRVVLNLYDLSCGLARQFSTALMGKAIEGIWHTGIVVYDNEYYYGSGIYHSLSGNTP 63

Query: 71  ------------------------------------CLLGHDCNNFSNEVDQPLVGSTIP 86
                                                LL H+CNNFSNEV Q LVGSTIP
Sbjct: 64  FGTPIHVIDLGITHVPKDVFETYLTEISPRYTAETYSLLAHNCNNFSNEVAQFLVGSTIP 123

BLAST of Csor.00g153620 vs. TAIR 10
Match: AT3G07090.1 (PPPDE putative thiol peptidase family protein )

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-13
Identity = 50/157 (31.85%), Postives = 68/157 (43.31%), Query Frame = 0

Query: 11  KESHRVVLNLYDLSRGSARQFLTTLLGKPIKGIC-------------------------- 70
           +E+H+V LN+YDLS+G ARQ   +LLGK I+G+                           
Sbjct: 3   EEAHKVTLNVYDLSQGLARQLSQSLLGKVIEGVWHTGIVVYGNEYFFGGGIQHLPVGRTP 62

Query: 71  -------------------------------------LLGHDCNNFSNEVDQPLVGSTIP 100
                                                LL H+CNNFSNEV Q LVG  IP
Sbjct: 63  YGTPIRTIELGLSHVPKDVFEMYLEEISPRYTAESYNLLTHNCNNFSNEVAQFLVGKGIP 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6GLM51.2e-0655.81Desumoylating isopeptidase 1 OS=Xenopus laevis OX=8355 GN=desi1 PE=2 SV=1[more]
Q6ICB06.1e-0655.81Desumoylating isopeptidase 1 OS=Homo sapiens OX=9606 GN=DESI1 PE=1 SV=1[more]
Q9CQT76.1e-0655.81Desumoylating isopeptidase 1 OS=Mus musculus OX=10090 GN=Desi1 PE=1 SV=1[more]
Q4KM306.1e-0655.81Desumoylating isopeptidase 1 OS=Rattus norvegicus OX=10116 GN=Desi1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
KAG6571583.19.21e-67100.00Desumoylating isopeptidase 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7011326.12.55e-5197.65Desumoylating isopeptidase 1, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_022156073.13.75e-2243.88desumoylating isopeptidase 1 isoform X2 [Momordica charantia][more]
XP_022156051.14.95e-2243.88desumoylating isopeptidase 1 isoform X1 [Momordica charantia] >XP_022156057.1 de... [more]
XP_038887396.12.75e-2043.88desumoylating isopeptidase 1 [Benincasa hispida] >XP_038887397.1 desumoylating i... [more]
Match NameE-valueIdentityDescription
A0A6J1DPL91.81e-2243.88desumoylating isopeptidase 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1DPL42.39e-2243.88desumoylating isopeptidase 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A0A0L8S43.76e-2043.88PPPDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G627710 PE=3 ... [more]
A0A1S3CMZ01.50e-1841.73desumoylating isopeptidase 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
E5GB951.50e-1841.73PPPDE domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G07090.11.8e-1331.85PPPDE putative thiol peptidase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042266PPPDE peptidase domain superfamilyGENE3D3.90.1720.30PPPDE domainscoord: 44..99
e-value: 1.4E-8
score: 36.4
IPR008580PPPDE peptidase domainPFAMPF05903Peptidase_C97coord: 45..88
e-value: 4.1E-8
score: 33.2
IPR008580PPPDE peptidase domainPANTHERPTHR12378DESUMOYLATING ISOPEPTIDASEcoord: 9..43
coord: 45..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..103
NoneNo IPR availablePANTHERPTHR12378:SF16EXPRESSED PROTEINcoord: 9..43
coord: 45..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g153620.m01Csor.00g153620.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008233 peptidase activity