Csor.00g152210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g152210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	GBBH-like_N domain-containing protein
Location	Csor_Chr14: 3627493 .. 3631359 (-)
RNA-Seq Expression	Csor.00g152210
Synteny	Csor.00g152210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCTTTGCAAAGGGCTTTCCGGACGATCCATACCACCGTTGATGCTCCGCAAATTACAAGTTTCGCTCTTCGCGCCCCCAAATGTGTAAGGCTTTTCCCCGCTAATCTTCGTTTGATTTTCCATCTGATTTCGATTCTGGTTCAGTGTGCTTGTTATATCGATCCATTATCGGGTTTTGATTTCTGGTTTTTTGTTTGTGATTTTAAAATGGTGATTTGAATCGGAACTGTCCGTTGTATTTATTTTTTCATGATTATAAAATGGTGATTTGTATCAGAATTGCTCGTTCTCCTTTCAAAATATGTAAGCCTTTTCCCCACTAATCTTCGTTTGATTTTCCATCTGATTTCGATTCTGGTTCAGTGTGCTCGTTATATCGATCCATTCTCGGGGTTTGATTTCTGGTTTTTTTGTTTGTGATTTTAAAATGGTGATTTGAATCGGAACTGTCCGTTATATTTATTTTTTCATGATTATAAAATGGTGATTTGAATCAGAATTGCTCCTTAATTATCTGGAAAGGTCCATCATGTTAAGGAAATGGAAATGGAAATGATAGCTGGTTCTTCTTAGCAAGTCATTCATTATCCTAACAAGTTAATATACCAGAAAATTGTTTCCCTATATATTTCAATGATAAAATGAAATTACAAAATGATGGAATCAAATCCAATAGATTACAAAAAAACTATTCTTATGTGCAATAAATTGGTTGATCGGTAAAGATACGTGTACTTGATGTCCCGCCCAAGAAAGAGACCCGCTCAATGAACATGTCTCAGAGAATATCCCAAATTTCATTAGATAAGGTAGTCTGCCAACCAAAAACCACTAGGATGTGTTCCCAAAAAAATCTAGCCTGTTTACACCAAATGAAAAGGTGGCTATGTGTTTGCTCATCATATTTGTAAAAAATGCAGCAACTAGGAGAGATATTAATCCATGGAGATCTTCTTTGCAGCTTGTCGTGAATATTAAGGCATGAGTGGTTGAGTTCCCAAAGGAAAAACTTCTACTTTTTAGGAAAATTTCCTTTCCAAATGGAAAGATATAGGTCGTTTTTATCATGATCACCAGCTGAGGATAGAAACTTGGAGAGGGATTCTGTTCCAGGACCAAAAATCGTTAGTATCATCGAGAACAACGACAGCAAGAGCATCAGATAGGCTGGTCCATTCCTCTATTTCCCTACCTGCAGGTTTCTCCTTGGCCAAAAATTTCAAGAAGGCAATGAATTATTCCATAAATTAGCCACTGAAGCTTCTTTTTTCTGTATGATAGCAAACATAGAGGTAAACTTGTCTCTTAGGGCCCTATTTTCCAACCAAATATCAGACCAAAACGGTGTGCCATCTCCTTTCCCTACCTTGCAGATGATGTGGTCTCCTGTTGCTCAAAATGGTGGGTGCCATATTTCAAGGTAATTATCTTCCTCCTAAGCGCATATTTTTCCTTATGAAATTCCAAATCCACTTAACCAACAAGGAAGTATTTTTCTGTTCTAGATCTGCAATCCTCCTTCCTCCTTCTCGGGGAGCTTGATTGTTTCTCAATCAAGATGGTGTGTACCTTTCTTCTCCTTGTCGCCCTTCCACACTAGAAGTTTCGAAATAGTCTCTCGATGGATGCCGAGATCTTTGTGAGGATGGGAAAGGGGATAATGATAGATGGGTAAGTTGGCCTAACTTGCTTGAATAAGATTTATGTGACTACTTCAGAAATGTGTGACCTCAAGAATTAGTCTGGGGCAATGGGGACCAAATGGGATTTTCAGAGCGTGTAGAGGTGTGGGAAAAGATTGATGCATGTGGCAGAGAGGGAGGGATGAAGCAGGGGAATGTTTGCTAGGAATGGGATGATGTACATGTCGCTTGGTAAGAGTGTTCGGTGGTGGTACGATAGGCTTTAATGGTTGGATAGCTCGATGGTGCGGTTTTTGGTGGAGTTGGTGCATGCGGGGGAATGGCTAGTTGGGTTTGGGAAGTGGTAAAGGTAAGACCACTTCTTTGGGGGTGCATGGGTTAATCTCTAGTGAAAACTGTGGTATTTAGCTGATGAAAGGGTTTGCTTCAAAAAGTGGGATGATTTATACTATCAAAGGGGGCAGAAGAAGACAATGGGAGGTGGAGACTTGCAAGGATGAAACTATATATGTAATAGTCCAAGCCCACCGTTGGCACATATTTTCCACTTTTGTCAGCCTCAGGGTTTTAAAATGTGTCTACTAGGGACAGGTTTCCACGCCCTTATAAGAAATGTTTCGTTTCCCTCTCCAACTAATGTGGGATCTCACAATCCACCCCCTTGGTGGCTCAGCGTCCTCGCTGGCACACCGCCCTGTGTCTGGCCCTGATACCATTTGTAACAGTCCAAGCCTACCGCTAGTAGATATTGTCTACTTTGGCCCGTTACATATCGCCGTCAGACTCACGATTTTAAAACATGTCTACTAGGGAGAGGTTTCCACACTCTTATAAGAAATGTTTCGTTCCCCTCTCCAACCAATGTGGGATCCCACAATTGATGTTCTCTTATAGACTTTGAAATTAGGTTTGGTGCATAACTTACATTAGAAGTTCCTTTTGCTGAATGTTTTGATGTGCTATTAGCCTTCATTTTGTGAATATGGTTTTTTCTTTTTCACGTACACTGTTTAGTATGATGCAGTTCGTTAAATGTTTCACTTTCAGGTAGAGGTTAAATTTGCAGATGGAAGTGTGTTCAACTTGTCAGCTGAATTCTTGAGAGTATATAGCCCAGCTGCTGATGCTAAGGTTCGGTCAATTGGGGGTGAAAAGGTACTGTAAAACAACTTTAGTTTCATTTATCTTTCTATCTAAAACTCTAGCTAATTCATCATAGGCAATGGTCAAATAGCCAAATTGGATGGTTGGATGATTTTTAAGGCTAGTGCTTTTAAATGAAACGTTTCCTTTTGATATTTGTGACTTGCACGGTAACAACTCAAGCCTACTGCTATTAGATATTGTCCGCTTTGGCCCATTACGTATCGCCATCAGCCTTACGGTTTTAAAATGCATCTCCAACCAATGTGGGATCTCACAATCCACCCTCCTCGAGGACCTATCGTTCTCGCTGGCACACCACCCCGTGTCTGGCTCTGATGTCATCTGTAACAGTCCAAGTCCACCACTAGTAGGTATTGTCCGCTTTGACTCGTTACAAGCCTCATAGTTTTAAAACGCGTTTACTAGAGAGAAGCTTCTACACCCTTATGAGGAATGTTTTGTTCCCTTTTCCAATCACCATGGGATCTCACATGCATTTTGACTGTTAGGAGACAGCTAACTAGATGGATGACTTCTATGGGTTGGACTATTTCTCTTTGAGCCCCAGCCCATGAAACACTTCTTTTATAAGTACTTTTGGAAGAAAAAAACAATTAACTTTTCGAACAATCAAACTTGATTAGGTTAGGACCAAGTGTAAATAATTTCAACGACTTAAAGATATTCAGACCCGATTGGTTTATAGAGATATCATTAGCCATATTCTAGAGTTTGGAGTATAAAATAACGGGTGCACGAGGGTTGGCCAAACTGCTCATTTAGCACGATTTTCTGTTTAACCACGTTCTCATGATCCGATCCTTCTACTGATATATCAACATCATCTAGAGCTTTAACTGATTTTGTTTTATAAGATTCAATTACTAAATGCACGTTTCAAACTTAGGTAATTTCTGGACGACGTCACGTCGGTATCATGTCTGCAGAACCAGTTGGGAACTATGGGGTAAGGTACTTTGAAATTACTAGCTACTATTAATTTTAGCAATCTTTTGGTATTGACTTTGAAGAATCCAAACATATTGCTTGAATTTGGTAGGATCCTTTTTGA

mRNA sequence

ATGTTAGCTTTGCAAAGGGCTTTCCGGACGATCCATACCACCGTTGATGCTCCGCAAATTACAAGTTTCGCTCTTCGCGCCCCCAAATGTGTAGAGGTTAAATTTGCAGATGGAAGTGTGTTCAACTTGTCAGCTGAATTCTTGAGAGTATATAGCCCAGCTGCTGATGCTAAGGTTCGGTCAATTGGGGGTGAAAAGGTAATTTCTGGACGACGTCACGTCGGTATCATGTCTGCAGAACCAGTTGGGAACTATGGGGATCCTTTTTGA

Coding sequence (CDS)

ATGTTAGCTTTGCAAAGGGCTTTCCGGACGATCCATACCACCGTTGATGCTCCGCAAATTACAAGTTTCGCTCTTCGCGCCCCCAAATGTGTAGAGGTTAAATTTGCAGATGGAAGTGTGTTCAACTTGTCAGCTGAATTCTTGAGAGTATATAGCCCAGCTGCTGATGCTAAGGTTCGGTCAATTGGGGGTGAAAAGGTAATTTCTGGACGACGTCACGTCGGTATCATGTCTGCAGAACCAGTTGGGAACTATGGGGATCCTTTTTGA

Protein sequence

MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVRSIGGEKVISGRRHVGIMSAEPVGNYGDPF

Homology

[Close]

BLAST of Csor.00g152210 vs. NCBI nr
Match: KAG6581078.1 (hypothetical protein SDJN03_21080, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178 bits (451), Expect = 3.22e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          SIGGEKVISGRRHVGIMSAEPVGNYGDPF
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89

[Close]

BLAST of Csor.00g152210 vs. NCBI nr
Match: XP_022935012.1 (uncharacterized protein LOC111442002 isoform X2 [Cucurbita moschata])

HSP 1 Score: 173 bits (439), Expect = 2.18e-54
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLALQRAFRTIHTTVDAPQ+TSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALQRAFRTIHTTVDAPQVTSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          SIGGEKVISGRRHVGIMSAEPVGNYGDPF
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89

[Close]

BLAST of Csor.00g152210 vs. NCBI nr
Match: XP_023528840.1 (uncharacterized protein LOC111791650 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023528841.1 uncharacterized protein LOC111791650 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (434), Expect = 1.43e-53
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLALQRAFRTIHTTVDAPQITSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 5  MLALQRAFRTIHTTVDAPQITSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 64

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          SIGGEKVISGRRHV IMSAEPVGNYGDPF
Sbjct: 65 SIGGEKVISGRRHVSIMSAEPVGNYGDPF 93

[Close]

BLAST of Csor.00g152210 vs. NCBI nr
Match: XP_022984014.1 (uncharacterized protein LOC111482460 isoform X2 [Cucurbita maxima])

HSP 1 Score: 171 bits (432), Expect = 2.56e-53
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLAL RAFRTIHTTVD+PQITSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALHRAFRTIHTTVDSPQITSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          SIGGEKVISGRRHVGIMSAEPVGNYGDPF
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89

[Close]

BLAST of Csor.00g152210 vs. NCBI nr
Match: KAG7017806.1 (hypothetical protein SDJN02_19672 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170 bits (431), Expect = 1.58e-52
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYG 86
          SIGGEKVISGRRHVGIMSAEPVGNYG
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYG 86

[Close]

BLAST of Csor.00g152210 vs. ExPASy TrEMBL
Match: A0A6J1F4E2 (uncharacterized protein LOC111442002 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442002 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 1.06e-54
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLALQRAFRTIHTTVDAPQ+TSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALQRAFRTIHTTVDAPQVTSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          SIGGEKVISGRRHVGIMSAEPVGNYGDPF
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89

[Close]

BLAST of Csor.00g152210 vs. ExPASy TrEMBL
Match: A0A6J1J985 (uncharacterized protein LOC111482460 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482460 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 1.24e-53
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLAL RAFRTIHTTVD+PQITSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALHRAFRTIHTTVDSPQITSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          SIGGEKVISGRRHVGIMSAEPVGNYGDPF
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYGDPF 89

[Close]

BLAST of Csor.00g152210 vs. ExPASy TrEMBL
Match: A0A6J1F9C8 (uncharacterized protein LOC111442002 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442002 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 5.17e-51
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLALQRAFRTIHTTVDAPQ+TSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALQRAFRTIHTTVDAPQVTSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYG 86
          SIGGEKVISGRRHVGIMSAEPVGNYG
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYG 86

[Close]

BLAST of Csor.00g152210 vs. ExPASy TrEMBL
Match: A0A6J1J9C4 (uncharacterized protein LOC111482460 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482460 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 6.02e-50
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MLALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60
          MLAL RAFRTIHTTVD+PQITSFALRAPK VEVKFADGSVFNLSAEFLRVYSPAADAKVR
Sbjct: 1  MLALHRAFRTIHTTVDSPQITSFALRAPKYVEVKFADGSVFNLSAEFLRVYSPAADAKVR 60

Query: 61 SIGGEKVISGRRHVGIMSAEPVGNYG 86
          SIGGEKVISGRRHVGIMSAEPVGNYG
Sbjct: 61 SIGGEKVISGRRHVGIMSAEPVGNYG 86

[Close]

BLAST of Csor.00g152210 vs. ExPASy TrEMBL
Match: A0A6J1DMU7 (uncharacterized protein LOC111021468 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021468 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 4.54e-49
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 2  LALQRAFRTIHTTVDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADAKVRS 61
          +AL RAFRTIHTTV+AP++TSFALRAPK VEVKFADGS+FNLSAEFLR+YSPA DAKVRS
Sbjct: 1  MALHRAFRTIHTTVEAPRLTSFALRAPKFVEVKFADGSLFNLSAEFLRIYSPAVDAKVRS 60

Query: 62 IGGEKVISGRRHVGIMSAEPVGNYGDPF 89
          IGGEKVISGRRHVGIMSAEPVGNYGD F
Sbjct: 61 IGGEKVISGRRHVGIMSAEPVGNYGDTF 88

[Close]

BLAST of Csor.00g152210 vs. TAIR 10
Match: AT3G27340.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 1035 Blast hits to 1035 proteins in 399 species: Archae - 0; Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-25
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MLALQRAF-RTIHTT--VDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADA 60
          M A+ R   R +H T  +  P+++ F++ +PK VEV++ADG+ FN S+EFLR++SPAAD 
Sbjct: 1  MWAITRVISRRVHGTSFITIPKLSGFSIVSPKQVEVEYADGTKFNFSSEFLRIHSPAADG 60

Query: 61 KVRSIGGEKVISGRRHVGIMSAEPVGNYG 87
          KVRSIGGEKVISGRR+VGIMSAEPVGNYG
Sbjct: 61 KVRSIGGEKVISGRRYVGIMSAEPVGNYG 89

[Close]

BLAST of Csor.00g152210 vs. TAIR 10
Match: AT3G27340.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 693 Blast hits to 693 proteins in 282 species: Archae - 0; Bacteria - 530; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-25
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MLALQRAF-RTIHTT--VDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADA 60
          M A+ R   R +H T  +  P+++ F++ +PK VEV++ADG+ FN S+EFLR++SPAAD 
Sbjct: 1  MWAITRVISRRVHGTSFITIPKLSGFSIVSPKQVEVEYADGTKFNFSSEFLRIHSPAADG 60

Query: 61 KVRSIGGEKVISGRRHVGIMSAEPVGNYG 87
          KVRSIGGEKVISGRR+VGIMSAEPVGNYG
Sbjct: 61 KVRSIGGEKVISGRRYVGIMSAEPVGNYG 89

[Close]

BLAST of Csor.00g152210 vs. TAIR 10
Match: AT3G27340.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 945 Blast hits to 945 proteins in 390 species: Archae - 0; Bacteria - 710; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-25
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MLALQRAF-RTIHTT--VDAPQITSFALRAPKCVEVKFADGSVFNLSAEFLRVYSPAADA 60
          M A+ R   R +H T  +  P+++ F++ +PK VEV++ADG+ FN S+EFLR++SPAAD 
Sbjct: 1  MWAITRVISRRVHGTSFITIPKLSGFSIVSPKQVEVEYADGTKFNFSSEFLRIHSPAADG 60

Query: 61 KVRSIGGEKVISGRRHVGIMSAEPVGNYG 87
          KVRSIGGEKVISGRR+VGIMSAEPVGNYG
Sbjct: 61 KVRSIGGEKVISGRRYVGIMSAEPVGNYG 89

The following BLAST results are available for this feature:

BLAST of Csor.00g152210 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g152210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581078.1	3.22e-56	100.00	hypothetical protein SDJN03_21080, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935012.1	2.18e-54	97.75	uncharacterized protein LOC111442002 isoform X2 [Cucurbita moschata]	[more]
XP_023528840.1	1.43e-53	97.75	uncharacterized protein LOC111791650 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022984014.1	2.56e-53	96.63	uncharacterized protein LOC111482460 isoform X2 [Cucurbita maxima]	[more]
KAG7017806.1	1.58e-52	100.00	hypothetical protein SDJN02_19672 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g152210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4E2	1.06e-54	97.75	uncharacterized protein LOC111442002 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J985	1.24e-53	96.63	uncharacterized protein LOC111482460 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F9C8	5.17e-51	97.67	uncharacterized protein LOC111442002 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J9C4	6.02e-50	96.51	uncharacterized protein LOC111482460 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DMU7	4.54e-49	88.64	uncharacterized protein LOC111021468 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Csor.00g152210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27340.1	6.8e-25	62.92	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPR...	[more]
AT3G27340.2	6.8e-25	62.92	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPR...	[more]
AT3G27340.3	6.8e-25	62.92	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPR...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038492	GBBH-like, N-terminal domain superfamily	GENE3D	3.30.2020.30		coord: 14..87 e-value: 1.9E-7 score: 33.1
IPR010376	Gamma-butyrobetaine hydroxylase-like, N-terminal	PFAM	PF06155	GBBH-like_N	coord: 29..86 e-value: 4.2E-9 score: 36.9
None	No IPR available	PANTHER	PTHR35303:SF6	BNAA06G32170D PROTEIN	coord: 8..86
None	No IPR available	PANTHER	PTHR35303	OS02G0197800 PROTEIN	coord: 8..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g152210.m01	Csor.00g152210.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding