Csor.00g152000 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGCCAATGTCAAATCCAGCGGATATCCGTCTGCTGCTTCTTCTCTCTCTTCCGTTCGATCCTTAGCGCCAATACGGTTCCCTTCGCTACCACGTACCGTTCGTTTCGACGGTTCTGGAACTTCACGGCGGCTCCAGGTCCTCGCCATGGCTGTGAAGCGGAGTCCTAAGCGCCTCAAGTACTCTGCTCCACGCTTCACCAAGGTTCTCCCTCGCTAAATACTCCCGTTTTTTCGGCTTGATTCTGCCCTTGTTGCTACTTATTGTATATGAAATTGCTGTCGCTATTGCTTGGTATAGAAAACCTAATGGCGGAGGTAGAATTGCTTAAAGTGAATTAAACATTTGTACTGTTGTCGCTTATTTATTTTAGTATAGATTGACACTCAGTGAATCGAGTAGGAGATTGCGGGGAGTATAGAAAGGATTATTGCAAGATTTGGATTGTTGGCAACACCAGTGATTTTGCCTGTTTTTGGTAGATGAAATTTGGAAATCAACGAAGTTAATAAACTTGTGCTCACTATGGTCTTTATCAGGAAGGGAGCTTGCTATATGTCAAAGCTGAATCGGAAGAGGATGCTTGGAAATTAGAACCCATAGTAGATCTTCTAAAAGAAGGCGCAGTTGGGGTTATTCCTACGGATACAGTGTATTTCTCTCTAACTTCATATGTCTCTCACCTTTTGAGATTTCTTTATTGCTAACATGGCTGACTCTTAAGATGAAATTGGACGCTTGAACGAGTAAATTTGTTCACAGTTTGTAAGAATCGTACTTGCACTCTCTGTGTCATGCCACCCAGATTTTAGGCTGTCTTAACTCTGTTGAGAACGAGCTTCAAACTTCTACAGTGAATTTTTGGTTTCCCATGAGTATACTTTAGTCGGAATATTATTGGTTCGTTCAAATTGATTGTATTTGTATGGATATTCTACTTGTGATGATAAGAGTTCTGGAGGAGATGTAGAAGATTTAAGTTTGTGAATTTAAATTTACAGTGACAAGGATTGCAAAAGGAAATTTGTTCAAGTTTCTTATGCTTTTGATGGACCATCTCGTGAATTTTGATTTCACAGCATTTTTGTTCCATTTCATAGATCTTTGTTTGTCTCTTCCTTTCATGTGTAACGGGGTGCGTGTGCTTATATTTTTCAAGGTATGCAATAGTTTGTGATTTGAAGAACCCCTCAGCCATTGAACGAATGCGAAGGTCGAAGTTGTTAATTTGTTATGCTATACTAGATGATATATTTGATTAGTTACTTCAGTTTCTCTCCCCTGATGCTAAAGTTTATTGTGCTGTTTAATGCAGGATCAAGAATATAGAACCTTCCAAGGTGTGCTTATTCTTAACAATCTCTGTAGTGTGCTTTAAATAATGCTCATGTGGCCCTTCAAACTCTTGAACCACAACTACAATGCTCAAATGATGCTGGACAAGATAATTTAATCTACTTATTATCGTTCATGTCTGTCTATCTACAGCCTACCTTTCCATTTTTTCATTATGTTCCTTAATTTTCACTTATAATCAACTATGCAGCCTCTAAGTATTTTGTGCCACTCTTTCCGGGACATCGATAAATATACTACAGGGTTTCCCTGTGGTGACGGCCAAGGCCATTCAAATATATTTCGCATGGTTAAGCATTGCCTACCTGGACCAGTGAGTGGCTCTTCTAACCATGTTTCGTTATGATAACTCTTTATTCTCAGTCCTTAGGATTACATAGTGTCCCCAAATGAGTTCTAGTGCCTGTAGTTTCCATAATCACGTAGAATTGAAGAAAGTGAGAAAAACATTTTCTGTTATTGTCCTATAGATGTCTTGATATATTATATAGTTCGTAGTGAAATTCTCTTAAGTTCATTGAACTCTTTAACTAGAGCAATTGATTAGTGAGACAGTTTTTGTGTAACAGTATACCTTCATCTTAACTGCAAGCAAAGAACTGCCTAAACAGTACATAGGGTACGGCACAACCACTGCAAAACATGCATCAAGGAAGAATGTCGGTGTGCGCATTCCCGATGATGCAATATGTCAAGCAGTACTGGAAAAGATGGATGCTCCATTGATATCCACTAGGTTAGTACAATCAATACTCTTCTAGTTCTCTCTCCCTTCCTCTCAACGCGTCTCTTGATTGGTTTCGAGAACTGAAAAGACCTTCTGTACAAGCTGTTTAACAATTGCTCTCCATATCTGTTTGCCTATTTCTCATGCAGCTATTCGACTCCATAACGCAGAGTTTTATTTTGGTTTAATTGACTATCAATGTTTTAACAGGATTCTTTCCATTCCTTCCTATCCATTTCTGGATTGATCATTGGAAGGGGAGACTATTTGTATTAGTTGATTTAAGATTGTTTTAAACGATCGAATCCTAAAAATAGTGAAAGGAAATAAGTATTTCAGAAGTGATGATTTGTTCCAACTATATGTTTGTAACGGCTCAAGCCCACCGCCAGCAGATATTGTCCTCTTTGGGCTTACTCTTCTGGGCTTTCCCTCAAGATTTTAAAACGTGTCTGCTAGAGAGAGGTTTCCACACTTTTATAAAGAATGCTTCGGATCTCACAATGTTAATCCCTTCTTTCAGTGTCAAATGCTTGAAGGAAAATGAGTGGTTGCTCGATCCAGTTGTCATAGCGGATATCTACGGGAAAGAGGTATGAATAAATCCTACAAAGGCAGAGTGAATATTTATGCAGTAATACCAAATTTTTTCTGAAGTCTGGTTGTTTGCTTCAAATAGGGTCTGGATTTTGTGGTGGATGGTGGAGTGAGAGTGGCAGATCCATCCACCGTAGTAGATATGACTATCACTCCACCAAAGCTTTTGCGGCAAGGGAAGGTAATCAATTAGCCATTTCATTTTAGCATAATGAACACTGAATTATAATTAACTCGCCTCATCTCTTGCTATCTGATCACGTATCCAGCGACATTCATTCAAAAGCAATATTTTCTATTAAATCTAGATCAAACAATATCTGAAGTTGGTCACTCATTTCTTCGCTGTGCTGTCCCGGTCTCGTGCTCGATCCTCATGAGATGGAGCGAGTACCATAATTTCAAGTTTCTGATGAATTTAGATAAGTCATTGTTCATTGTCTTCCTCCTCAATGTTTTGCAAAATCCAGGGAGCTAAACTGCCATGGATGGTAGCTGAAGGTGACGACGAACCACCCTCCGAGTGA ATGATTGCCAATGTCAAATCCAGCGGATATCCGTCTGCTGCTTCTTCTCTCTCTTCCGTTCGATCCTTAGCGCCAATACGGTTCCCTTCGCTACCACGTACCGTTCGTTTCGACGGTTCTGGAACTTCACGGCGGCTCCAGGTCCTCGCCATGGCTGTGAAGCGGAGTCCTAAGCGCCTCAAGTACTCTGCTCCACGCTTCACCAAGGAAGGGAGCTTGCTATATGTCAAAGCTGAATCGGAAGAGGATGCTTGGAAATTAGAACCCATAGTAGATCTTCTAAAAGAAGGCGCAGTTGGGGTTATTCCTACGGATACAGTGTATGCAATAGTTTGTGATTTGAAGAACCCCTCAGCCATTGAACGAATGCGAAGGATCAAGAATATAGAACCTTCCAAGCCTCTAAGTATTTTGTGCCACTCTTTCCGGGACATCGATAAATATACTACAGGGTTTCCCTGTGGTGACGGCCAAGGCCATTCAAATATATTTCGCATGGTTAAGCATTGCCTACCTGGACCATATACCTTCATCTTAACTGCAAGCAAAGAACTGCCTAAACAGTACATAGGGTACGGCACAACCACTGCAAAACATGCATCAAGGAAGAATGTCGGTGTGCGCATTCCCGATGATGCAATATGTCAAGCAGTACTGGAAAAGATGGATGCTCCATTGATATCCACTAGTGTCAAATGCTTGAAGGAAAATGAGTGGTTGCTCGATCCAGTTGTCATAGCGGATATCTACGGGAAAGAGGGTCTGGATTTTGTGGTGGATGGTGGAGTGAGAGTGGCAGATCCATCCACCGTAGTAGATATGACTATCACTCCACCAAAGCTTTTGCGGCAAGGGAAGGGAGCTAAACTGCCATGGATGGTAGCTGAAGGTGACGACGAACCACCCTCCGAGTGA ATGATTGCCAATGTCAAATCCAGCGGATATCCGTCTGCTGCTTCTTCTCTCTCTTCCGTTCGATCCTTAGCGCCAATACGGTTCCCTTCGCTACCACGTACCGTTCGTTTCGACGGTTCTGGAACTTCACGGCGGCTCCAGGTCCTCGCCATGGCTGTGAAGCGGAGTCCTAAGCGCCTCAAGTACTCTGCTCCACGCTTCACCAAGGAAGGGAGCTTGCTATATGTCAAAGCTGAATCGGAAGAGGATGCTTGGAAATTAGAACCCATAGTAGATCTTCTAAAAGAAGGCGCAGTTGGGGTTATTCCTACGGATACAGTGTATGCAATAGTTTGTGATTTGAAGAACCCCTCAGCCATTGAACGAATGCGAAGGATCAAGAATATAGAACCTTCCAAGCCTCTAAGTATTTTGTGCCACTCTTTCCGGGACATCGATAAATATACTACAGGGTTTCCCTGTGGTGACGGCCAAGGCCATTCAAATATATTTCGCATGGTTAAGCATTGCCTACCTGGACCATATACCTTCATCTTAACTGCAAGCAAAGAACTGCCTAAACAGTACATAGGGTACGGCACAACCACTGCAAAACATGCATCAAGGAAGAATGTCGGTGTGCGCATTCCCGATGATGCAATATGTCAAGCAGTACTGGAAAAGATGGATGCTCCATTGATATCCACTAGTGTCAAATGCTTGAAGGAAAATGAGTGGTTGCTCGATCCAGTTGTCATAGCGGATATCTACGGGAAAGAGGGTCTGGATTTTGTGGTGGATGGTGGAGTGAGAGTGGCAGATCCATCCACCGTAGTAGATATGACTATCACTCCACCAAAGCTTTTGCGGCAAGGGAAGGGAGCTAAACTGCCATGGATGGTAGCTGAAGGTGACGACGAACCACCCTCCGAGTGA MIANVKSSGYPSAASSLSSVRSLAPIRFPSLPRTVRFDGSGTSRRLQVLAMAVKRSPKRLKYSAPRFTKEGSLLYVKAESEEDAWKLEPIVDLLKEGAVGVIPTDTVYAIVCDLKNPSAIERMRRIKNIEPSKPLSILCHSFRDIDKYTTGFPCGDGQGHSNIFRMVKHCLPGPYTFILTASKELPKQYIGYGTTTAKHASRKNVGVRIPDDAICQAVLEKMDAPLISTSVKCLKENEWLLDPVVIADIYGKEGLDFVVDGGVRVADPSTVVDMTITPPKLLRQGKGAKLPWMVAEGDDEPPSE Homology
BLAST of Csor.00g152000 vs. ExPASy Swiss-Prot
Match: P0AFR5 (Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yciO PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.0e-24 Identity = 62/203 (30.54%), Postives = 113/203 (55.67%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy Swiss-Prot
Match: P0AFR4 (Uncharacterized protein YciO OS=Escherichia coli (strain K12) OX=83333 GN=yciO PE=1 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.0e-24 Identity = 62/203 (30.54%), Postives = 113/203 (55.67%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy Swiss-Prot
Match: P0AFR6 (Uncharacterized protein YciO OS=Shigella flexneri OX=623 GN=yciO PE=3 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 3.0e-24 Identity = 62/203 (30.54%), Postives = 113/203 (55.67%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy Swiss-Prot
Match: P45103 (Uncharacterized protein HI_1198 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_1198 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 1.9e-23 Identity = 67/220 (30.45%), Postives = 124/220 (56.36%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy Swiss-Prot
Match: Q86U90 (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 2.0e-12 Identity = 63/217 (29.03%), Postives = 96/217 (44.24%), Query Frame = 0
BLAST of Csor.00g152000 vs. NCBI nr
Match: KAG6581099.1 (putative protein YciO, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 604 bits (1558), Expect = 6.22e-218 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
BLAST of Csor.00g152000 vs. NCBI nr
Match: XP_022935670.1 (uncharacterized protein LOC111442458 [Cucurbita moschata]) HSP 1 Score: 593 bits (1530), Expect = 1.20e-213 Identity = 301/305 (98.69%), Postives = 302/305 (99.02%), Query Frame = 0
BLAST of Csor.00g152000 vs. NCBI nr
Match: XP_023527501.1 (uncharacterized protein LOC111790710 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 593 bits (1529), Expect = 1.64e-213 Identity = 299/304 (98.36%), Postives = 300/304 (98.68%), Query Frame = 0
BLAST of Csor.00g152000 vs. NCBI nr
Match: XP_022984138.1 (uncharacterized protein LOC111482522 [Cucurbita maxima]) HSP 1 Score: 583 bits (1502), Expect = 2.22e-209 Identity = 295/305 (96.72%), Postives = 298/305 (97.70%), Query Frame = 0
BLAST of Csor.00g152000 vs. NCBI nr
Match: XP_038877956.1 (uncharacterized protein YciO [Benincasa hispida]) HSP 1 Score: 536 bits (1380), Expect = 1.21e-190 Identity = 271/301 (90.03%), Postives = 279/301 (92.69%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy TrEMBL
Match: A0A6J1FBB1 (uncharacterized protein LOC111442458 OS=Cucurbita moschata OX=3662 GN=LOC111442458 PE=3 SV=1) HSP 1 Score: 593 bits (1530), Expect = 5.80e-214 Identity = 301/305 (98.69%), Postives = 302/305 (99.02%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy TrEMBL
Match: A0A6J1J9P6 (uncharacterized protein LOC111482522 OS=Cucurbita maxima OX=3661 GN=LOC111482522 PE=3 SV=1) HSP 1 Score: 583 bits (1502), Expect = 1.07e-209 Identity = 295/305 (96.72%), Postives = 298/305 (97.70%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1) HSP 1 Score: 531 bits (1367), Expect = 4.66e-189 Identity = 268/301 (89.04%), Postives = 280/301 (93.02%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1) HSP 1 Score: 516 bits (1330), Expect = 2.02e-183 Identity = 261/301 (86.71%), Postives = 275/301 (91.36%), Query Frame = 0
BLAST of Csor.00g152000 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1) HSP 1 Score: 509 bits (1312), Expect = 5.49e-180 Identity = 268/345 (77.68%), Postives = 280/345 (81.16%), Query Frame = 0
BLAST of Csor.00g152000 vs. TAIR 10
Match: AT3G01920.1 (DHBP synthase RibB-like alpha/beta domain ) HSP 1 Score: 389.4 bits (999), Expect = 2.6e-108 Identity = 197/300 (65.67%), Postives = 233/300 (77.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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