Csor.00g150980 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g150980
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Importin N-terminal domain-containing protein
Location	Csor_Chr14: 4451475 .. 4451987 (-)
RNA-Seq Expression	Csor.00g150980
Synteny	Csor.00g150980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGTTGAGATTAAAGATAGTATTTCAGACTTCATGCGAGTTGAGATTAAAGATAGTATTTCTTATAAATCCATGATCAACTCTATAATTAGACATGGCGACTTGGCAACTGTGTACACGTTATTAATGAATTCAATGAGTGGCGATGAGAGTGTTCGTAAACAGGCAGAGTTGGCGCTATCTGACACTGATAGTCGATATGGGTTTCACTCATGTCTCTTGGAGCTGATCACTTCACCAGGTTTAGTTTCTCAGCCCGATCTTCATCTTATGGCATCCGTTTATTTGAAGAACAATATTAATCGTTATTGGAGGGCAAGTAGTAGACACGTAAATCCGAATTTACGGTCGACCCGTCTAATATTTTCTTTGTTTTTCTTTTGTTCTGGCTAATTTTGCATCTTCCCATTCTCATATTCTTTTAGTTTCTGAGTTTCAGTGGAATTAGCAACTGGTGAGAAGGCTCATATCAGGAAAAAGCTCGTCCCACTTGAGAGAACCAGATTATGA

mRNA sequence

ATGCGAGTTGAGATTAAAGATAGTATTTCAGACTTCATGCGAGTTGAGATTAAAGATAGTATTTCTTATAAATCCATGATCAACTCTATAATTAGACATGGCGACTTGGCAACTGTGTACACGTTATTAATGAATTCAATGAGTGGCGATGAGAGTGTTCGTAAACAGGCAGAGTTGGCGCTATCTGACACTGATAGTCGATATGGGTTTCACTCATGTCTCTTGGAGCTGATCACTTCACCAGTGGAATTAGCAACTGGTGAGAAGGCTCATATCAGGAAAAAGCTCGTCCCACTTGAGAGAACCAGATTATGA

Coding sequence (CDS)

ATGCGAGTTGAGATTAAAGATAGTATTTCAGACTTCATGCGAGTTGAGATTAAAGATAGTATTTCTTATAAATCCATGATCAACTCTATAATTAGACATGGCGACTTGGCAACTGTGTACACGTTATTAATGAATTCAATGAGTGGCGATGAGAGTGTTCGTAAACAGGCAGAGTTGGCGCTATCTGACACTGATAGTCGATATGGGTTTCACTCATGTCTCTTGGAGCTGATCACTTCACCAGTGGAATTAGCAACTGGTGAGAAGGCTCATATCAGGAAAAAGCTCGTCCCACTTGAGAGAACCAGATTATGA

Protein sequence

MRVEIKDSISDFMRVEIKDSISYKSMINSIIRHGDLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSPVELATGEKAHIRKKLVPLERTRL

Homology

[Close]

BLAST of Csor.00g150980 vs. NCBI nr
Match: KAG6581200.1 (hypothetical protein SDJN03_21202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201 bits (511), Expect = 6.71e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MRVEIKDSISDFMRVEIKDSISYKSMINSIIRHGDLATVYTLLMNSMSGDESVRKQAELA 60
           MRVEIKDSISDFMRVEIKDSISYKSMINSIIRHGDLATVYTLLMNSMSGDESVRKQAELA
Sbjct: 1   MRVEIKDSISDFMRVEIKDSISYKSMINSIIRHGDLATVYTLLMNSMSGDESVRKQAELA 60

Query: 61  LSDTDSRYGFHSCLLELITSPVELATGEKAHIRKKLVPLERTRL 104
           LSDTDSRYGFHSCLLELITSPVELATGEKAHIRKKLVPLERTRL
Sbjct: 61  LSDTDSRYGFHSCLLELITSPVELATGEKAHIRKKLVPLERTRL 104

[Close]

BLAST of Csor.00g150980 vs. NCBI nr
Match: XP_038883899.1 (importin-11 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.01e-14
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGDE VRKQAE ALSDTDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDEGVRKQAEKALSDTDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. NCBI nr
Match: KAG7036713.1 (Importin-11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 3.10e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGD  VRKQAELALS TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDAGVRKQAELALSGTDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. NCBI nr
Match: XP_022143284.1 (importin-11 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 3.51e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGDE VRKQAE ALS+TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDEGVRKQAESALSETDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. NCBI nr
Match: XP_008457041.1 (PREDICTED: importin-11 [Cucumis melo] >TYK01562.1 importin-11 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.51e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGDE VRKQAE ALS+TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDEGVRKQAEKALSETDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. ExPASy TrEMBL
Match: A0A5D3BRZ8 (Importin-11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001360 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.70e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGDE VRKQAE ALS+TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDEGVRKQAEKALSETDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. ExPASy TrEMBL
Match: A0A6J1CNW0 (importin-11 OS=Momordica charantia OX=3673 GN=LOC111013193 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.70e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGDE VRKQAE ALS+TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDEGVRKQAESALSETDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. ExPASy TrEMBL
Match: A0A1S3C5V8 (importin-11 OS=Cucumis melo OX=3656 GN=LOC103496816 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.70e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGDE VRKQAE ALS+TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDEGVRKQAEKALSETDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. ExPASy TrEMBL
Match: A0A0A0LA08 (Importin N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G313240 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.97e-14
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 33 HGDLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          + D+A +YTLLMNSMSGDE VRKQAE ALS+TDSR GF SCLLELITSP
Sbjct: 5  NSDMAAMYTLLMNSMSGDEVVRKQAEKALSETDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. ExPASy TrEMBL
Match: A0A6J1GA09 (importin-11 OS=Cucurbita moschata OX=3662 GN=LOC111452158 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.32e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITSP 81
          D+A +YTLLMNSMSGD  VRKQAELALS TDSR GF SCLLELITSP
Sbjct: 7  DMAAMYTLLMNSMSGDAGVRKQAELALSGTDSRSGFCSCLLELITSP 53

[Close]

BLAST of Csor.00g150980 vs. TAIR 10
Match: AT3G08960.1 (ARM repeat superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 35 DLATVYTLLMNSMSGDESVRKQAELALSDTDSRYGFHSCLLELITS 81
          DL  +YTLL NSMSGDE+VR+ AE ALS ++SR GF SCL+E+I S
Sbjct: 7  DLPAMYTLLANSMSGDETVRRPAEAALSLSESRPGFCSCLMEVIAS 52

The following BLAST results are available for this feature:

BLAST of Csor.00g150980 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g150980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581200.1	6.71e-65	100.00	hypothetical protein SDJN03_21202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038883899.1	1.01e-14	85.11	importin-11 [Benincasa hispida]	[more]
KAG7036713.1	3.10e-14	82.98	Importin-11 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022143284.1	3.51e-14	82.98	importin-11 [Momordica charantia]	[more]
XP_008457041.1	3.51e-14	82.98	PREDICTED: importin-11 [Cucumis melo] >TYK01562.1 importin-11 [Cucumis melo var....	[more]

BLAST of Csor.00g150980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRZ8	1.70e-14	82.98	Importin-11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001360 P...	[more]
A0A6J1CNW0	1.70e-14	82.98	importin-11 OS=Momordica charantia OX=3673 GN=LOC111013193 PE=4 SV=1	[more]
A0A1S3C5V8	1.70e-14	82.98	importin-11 OS=Cucumis melo OX=3656 GN=LOC103496816 PE=4 SV=1	[more]
A0A0A0LA08	1.97e-14	79.59	Importin N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A6J1GA09	4.32e-14	82.98	importin-11 OS=Cucurbita moschata OX=3662 GN=LOC111452158 PE=4 SV=1	[more]

BLAST of Csor.00g150980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08960.1	1.6e-09	65.22	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 33..100 e-value: 4.6E-6 score: 27.8
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 34..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g150980.m01	Csor.00g150980.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
molecular_function	GO:0031267	small GTPase binding