Csor.00g150240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g150240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	U1 small nuclear ribonucleoprotein A-like
Location	Csor_Chr14: 4879192 .. 4881724 (-)
RNA-Seq Expression	Csor.00g150240
Synteny	Csor.00g150240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGTCAACAGCACTGGCAATGAAGTTCCTTCGAACATGACCATCTACATTAACAATCTGAACGAGAAAATCAAGCTGGAAGGTATTCTTGAGGCGAGGGGGATAGGGGAGCTTCTTTAATGATCTGAATTATGTTGTGTTTTTTACTGTTTACTCCTTGGTGGAGCAGAATTAAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAAATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGGCAGGCTTGGGTTGTGTTCGAAGAAGTCTCTTCCGCCACTAATGCGATTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTCTTAGCCTTTTCAACTGCGAGAACTTTTATGTTGTTTGTTAAATTCGAGTTTAAGATGAAGACTAAATAAGTGTTGCTGTGAAGATATCGTTATCGTTCGTATGCGCACTTAATTAATGTAATAAAAATCATAGTGGCGAATGGGAAAGTGCCAATATATTCTTCTGTGCTACGAATTGGAATTGTGTTTGGGTTATATTGCGTCTTATCTTATTAGACAGTTGAGATTTAGTTACATATGGCTTGTAAATAATGTGGTTTTGCTGATTATTGCCAAACTGACGGCCTGGTCTGCTTGGATTTTTATAGCTGATATCATTTCGACGAAGCTAAAGAACAATTATTCTTTGATGATCAAGCATGTAACAGAATATGCACTGAGCCTTTGATCTTGAAGTGTATGTATACTTCTTAAATATATCCATTGTAGGCGTTTGAATTTATCGACCTGTGCTTTATGGCATTGGTTCTTAATATTTTCAACCACATCAAGTGGTTGTCAAATGGGGCTTCGGCAAATCTTTTGAAAGTTCTATATTTGTTGAGCATTTCTTGTTTGTAAATCTGGTGGCTAATATCCATATTTTCTTTGGATTTATGAAAATGTGTCATAGGCTTTATATCTTTTTCCATGGTATAAAGTGCAGACAACTCTATATATCATTTATTCCTCTGGTCTATTATTCATCTTTTGTTAGCTGGACTAATATTTTGGGAGTGTATCTTTTGTTAGCTGGACTAATATTTTGGGAGTGTATCTTTTGTTAGCTGGACTAATATTTTGGGGGAGTGTGGTGTAATACAAAACTAAGTGATGTTGTTTTGCAATGGTGTAGAGGATCCAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCACGGGGAAAAGGGTATAATTTGTCTTTATTTTCTATTTGACAATTCAAGAAAGTGAAGGAACGTGTTGTTCTATTGCTTATGTAGCAGTGTTTAATCAAAGTTTGTCCATTCTCTTGATGTGGTAGGGAGGAAGAAGAAAGAGCAGCATGATACTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTTCTGGAGCATATGGCGCAACAGGGGTAAGTATCTCTATTTAATACCTAAACATTAGGTTTTGGAAAATTCTTTTTTTTTTTCTATTTGAGCCTTCACTAACTTGCATAGTTGATTCTCCCACAATGTCAGTTTAGGATATTATATTCATCTGTTGTTAAAAAATGTATTCCAAGTGTTTCACTGACATGATTGTAAACTATAAAATCATAAAGGACAAGTAATAAGAGGTAGAACTTCACTTCCTGAGGCTAATTTTGCTTACTAAGAATGATGCTCTCTCTTCCATTCTCATTTCTCACTCTTTTCAGTAATTTGTATGTTATTCTATGCAATAGGAAGCACTTCATTCTCTTACTCCCTCCTCCTGGTAGTGAAAGTTCATTGTTATTTTTAGTTATTCATTTGGATTTTATCTGCCTTTTTATTTCCTTTCGCAGAGAGAGAGAAAGATATATTATATAGAGAACGAAGAAACGTACCGTGGGGGTTATTTGCATTTATTTCTTTTTTTCATTTCATATATCACAATGTGATGATTGTTAAAGAAGCCTTTACCAAATGATTCAACGCTTTAATTTCTGGGACTTAGTTGGTGATGTCTTCATGAGTAGATGTATTCTTGTATGTCTTTTATCTATTGACTAAGTTTTAAGGCGGCAAATCTTGGTTGACATTCATCGTATGAATAATTTTGATACTTAATTATGTTTATTTATTGGAATTTATATGTTACTAACGCACAGTTTCTCTTTCCTTCCCCCCTTCTGAAAATGGTGCAGCATTCTCAAGTCCCTTATCCAGGTGGAGTTATGGTACCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTATACAAAATCTTCCCCAGGAGACAACTCCAACGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTATGGTGATGAGGTACAATCGACAGTAGCCATGCAAGCACTCCAAGGTTTTAAGATGAATCCACAAAATTCAATGTTGATAACCTACGCGAAGAAATAG

mRNA sequence

ATGGCGGAGGTCAACAGCACTGGCAATGAAGTTCCTTCGAACATGACCATCTACATTAACAATCTGAACGAGAAAATCAAGCTGGAAGAATTAAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAAATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGGCAGGCTTGGGTTGTGTTCGAAGAAGTCTCTTCCGCCACTAATGCGATTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATCCAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCACGGGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATACTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTTCTGGAGCATATGGCGCAACAGGGCATTCTCAAGTCCCTTATCCAGGTGGAGTTATGGTACCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTATACAAAATCTTCCCCAGGAGACAACTCCAACGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTATGGTGATGAGGTACAATCGACAGTAGCCATGCAAGCACTCCAAGGTTTTAAGATGAATCCACAAAATTCAATGTTGATAACCTACGCGAAGAAATAG

Coding sequence (CDS)

ATGGCGGAGGTCAACAGCACTGGCAATGAAGTTCCTTCGAACATGACCATCTACATTAACAATCTGAACGAGAAAATCAAGCTGGAAGAATTAAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAAATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGGCAGGCTTGGGTTGTGTTCGAAGAAGTCTCTTCCGCCACTAATGCGATTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATCCAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCACGGGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATACTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTTCTGGAGCATATGGCGCAACAGGGCATTCTCAAGTCCCTTATCCAGGTGGAGTTATGGTACCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTATACAAAATCTTCCCCAGGAGACAACTCCAACGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTATGGTGATGAGGTACAATCGACAGTAGCCATGCAAGCACTCCAAGGTTTTAAGATGAATCCACAAAATTCAATGTTGATAACCTACGCGAAGAAATAG

Protein sequence

MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK

Homology

[Close]

BLAST of Csor.00g150240 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 6.3e-94
Identity = 181/249 (72.69%), Postives = 205/249 (82.33%), Query Frame = 0


Query: 1   MAEVN-STGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+EV  N TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKG 120
           AWVVF+   SA+ AI +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRH EKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDTNQAGMGLNPAFSGAYGATGH-SQVPYPGGVM--VPEAPAPPNSILFIQ 180
              +KK + HD+ Q GM +N A+ G YGA    SQVPYPGG+   +PEAPAPPN+ILF+Q
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLP ETTP +LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]

BLAST of Csor.00g150240 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.7e-89
Identity = 174/239 (72.80%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 9   NEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  P N+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKK---KEQ 128
           SAT A++ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR+ EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDTNQAGMGLNPAFSGAYGATGHSQVPYPGG--VMVPEAPAPPNSILFIQNLPQETTPTM 188
           HD +Q G+G+N A+ G YGA   SQ+P+ G   VM+PE    PN+ILF+QNLP ETTP M
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Csor.00g150240 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.7e-89
Identity = 174/239 (72.80%), Postives = 199/239 (83.26%), Query Frame = 0


Query: 9   NEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  P N+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKK---KEQ 128
           SAT A++ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR+ EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDTNQAGMGLNPAFSGAYGATGHSQVPYPGG--VMVPEAPAPPNSILFIQNLPQETTPTM 188
           HD +Q G+G+N A+ G YGA   SQ+P+ G   VM+PE    PN+ILF+QNLP ETTP M
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Csor.00g150240 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.9e-70
Identity = 135/233 (57.94%), Postives = 180/233 (77.25%), Query Frame = 0


Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++  EK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           +      P+   A G + ++ VP P      +   PPN+ILFIQNLP ETT  MLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Csor.00g150240 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.4e-70
Identity = 135/233 (57.94%), Postives = 177/233 (75.97%), Query Frame = 0


Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ +  EK  +K+   +T 
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           Q  M          GAT  + +P P      +   PPN+ILFI NLP ET   MLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Csor.00g150240 vs. NCBI nr
Match: XP_022984068.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023528767.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita pepo subsp. pepo] >KAG6581273.1 U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 477 bits (1227), Expect = 1.48e-169
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR
Sbjct: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT
Sbjct: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. NCBI nr
Match: XP_022934352.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata])

HSP 1 Score: 476 bits (1224), Expect = 4.25e-169
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATN+IRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR
Sbjct: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT
Sbjct: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. NCBI nr
Match: KAG7018000.1 (U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466 bits (1200), Expect = 3.11e-165
Identity = 241/255 (94.51%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEK-- 120
           WVVFEEVSSATN+IRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEK  
Sbjct: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKVF 120

Query: 121 -----------GRKKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPN 180
                      GRKKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPN
Sbjct: 121 NQRFVHSLDVVGRKKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPN 180

Query: 181 SILFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGF 240
           SILFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGF
Sbjct: 181 SILFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGF 240

Query: 241 KMNPQNSMLITYAKK 242
           KMNPQNSMLITYAKK
Sbjct: 241 KMNPQNSMLITYAKK 255

[Close]

BLAST of Csor.00g150240 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 457 bits (1175), Expect = 1.25e-161
Identity = 232/242 (95.87%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNA+RQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATVHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 454 bits (1169), Expect = 1.03e-160
Identity = 230/242 (95.04%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNA+RQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. ExPASy TrEMBL
Match: A0A6J1J9H9 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111482489 PE=4 SV=1)

HSP 1 Score: 477 bits (1227), Expect = 7.18e-170
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR
Sbjct: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT
Sbjct: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. ExPASy TrEMBL
Match: A0A6J1F2H5 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC111441543 PE=4 SV=1)

HSP 1 Score: 476 bits (1224), Expect = 2.06e-169
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATN+IRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR
Sbjct: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT
Sbjct: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 454 bits (1169), Expect = 4.99e-161
Identity = 230/242 (95.04%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNA+RQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 454 bits (1169), Expect = 4.99e-161
Identity = 230/242 (95.04%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNA+RQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 452 bits (1163), Expect = 4.10e-160
Identity = 226/242 (93.39%), Postives = 233/242 (96.28%), Query Frame = 0


Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVNSTGNE+P NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATNA+RQMQGFPFYDKPMRIQYAKTKSD+I+KSDGTFVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMG+NPAF GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRM+EAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 242
           KK
Sbjct: 241 KK 242

[Close]

BLAST of Csor.00g150240 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 345.1 bits (884), Expect = 4.5e-95
Identity = 181/249 (72.69%), Postives = 205/249 (82.33%), Query Frame = 0


Query: 1   MAEVN-STGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N   G+EV  N TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKG 120
           AWVVF+   SA+ AI +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRH EKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDTNQAGMGLNPAFSGAYGATGH-SQVPYPGGVM--VPEAPAPPNSILFIQ 180
              +KK + HD+ Q GM +N A+ G YGA    SQVPYPGG+   +PEAPAPPN+ILF+Q
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLP ETTP +LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]

BLAST of Csor.00g150240 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 265.8 bits (678), Expect = 3.5e-71
Identity = 135/233 (57.94%), Postives = 180/233 (77.25%), Query Frame = 0


Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++  EK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           +      P+   A G + ++ VP P      +   PPN+ILFIQNLP ETT  MLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Csor.00g150240 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 4.5e-71
Identity = 135/233 (57.94%), Postives = 177/233 (75.97%), Query Frame = 0


Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ +  EK  +K+   +T 
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           Q  M          GAT  + +P P      +   PPN+ILFI NLP ET   MLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Csor.00g150240 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-69
Identity = 135/233 (57.94%), Postives = 176/233 (75.54%), Query Frame = 0


Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNAIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ +  EK  +K+   +T 
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           Q  M      +GA    G      P G    +   PPN+ILFI NLP ET   MLQ+LF 
Sbjct: 125 QPSMP-----NGATTQNGMPPPFQPSG----QDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Csor.00g150240 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 228.4 bits (581), Expect = 6.1e-60
Identity = 116/202 (57.43%), Postives = 152/202 (75.25%), Query Frame = 0


Query: 41  QFGKILEVLAFKTLKHKGQAWVVFEEVSSATNAIRQMQGFPFYDKPMRIQYAKTKSDIIA 100
           +FG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRIQYAK+KSD + 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 101 KSDGTFVPREKRKRHGEKGRKKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVP 160
           K++G+FVP+EK+ +  EK  +K+   +T Q  M          GAT  + +P P      
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQNGMPVPPFQPSG 126

Query: 161 EAPAPPNSILFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVA 220
           +   PPN+ILFI NLP ET   MLQ+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++A
Sbjct: 127 QDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMA 186

Query: 221 MQALQGFKMNPQNSMLITYAKK 243
           MQALQGFK+ PQN M++++AKK
Sbjct: 187 MQALQGFKITPQNPMVVSFAKK 200

The following BLAST results are available for this feature:

BLAST of Csor.00g150240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39244	6.3e-94	72.69	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]
A2Y0J7	2.7e-89	72.80	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q0DKM4	2.7e-89	72.80	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
O22922	4.9e-70	57.94	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
Q8H1S6	6.4e-70	57.94	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]

BLAST of Csor.00g150240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984068.1	1.48e-169	100.00	U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023528767.1 U1 ...	[more]
XP_022934352.1	4.25e-169	99.59	U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata]	[more]
KAG7018000.1	3.11e-165	94.51	U1 small nuclear ribonucleoprotein A, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_038906378.1	1.25e-161	95.87	U1 small nuclear ribonucleoprotein A [Benincasa hispida]	[more]
XP_008454331.1	1.03e-160	95.04	PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm...	[more]

BLAST of Csor.00g150240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J9H9	7.18e-170	100.00	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1F2H5	2.06e-169	99.59	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A5D3E0R3	4.99e-161	95.04	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BYG3	4.99e-161	95.04	U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=...	[more]
A0A6J1K6I0	4.10e-160	93.39	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Csor.00g150240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47580.1	4.5e-95	72.69	spliceosomal protein U1A	[more]
AT2G30260.1	3.5e-71	57.94	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.1	4.5e-71	57.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	1.1e-69	57.94	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.3	6.1e-60	57.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..90 e-value: 8.2E-14 score: 61.9 coord: 169..238 e-value: 1.3E-9 score: 47.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 170..230 e-value: 5.9E-12 score: 45.2 coord: 17..87 e-value: 1.2E-10 score: 41.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..94 score: 14.555817
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..242 score: 12.202171
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..113 e-value: 3.5E-30 score: 106.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 157..242 e-value: 2.2E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..134
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 6..242
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 6..242
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 16..93 e-value: 3.01988E-50 score: 156.92
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 166..238 e-value: 2.8205E-37 score: 123.833
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g150240.m01	Csor.00g150240.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding