Csor.00g150020 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g150020
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 4991601 .. 4992101 (+)
RNA-Seq Expression	Csor.00g150020
Synteny	Csor.00g150020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCTTCGCTGGATTCCGCTACCAACGGAGATAGTGACACACCTCCCCTACCACGTCGAATCTTGCCTCGAAGAGAAGGGAACTGGCTTCGTCGGCTGAGATACGTCGGTAAGCATCCTATCTCTCTGTTTCTCTTCATCTTTCTCTCCCTCGCATATATATGTAACTTGCATAATGTGAGCAAGGAGGTGTTGCATGACCAAGGGTGTGAGAATGGCGCTTAAGAAGGGATGTGGGGCGGATAGAACTGGTGTCTGCGCCTAAAAGCTTCTAATTTAATGTATGCCCCTCCTGTAGTCCAAGTCTTTACTTTATCAGACCTTCCACTTAGAACTGGTGCTGATAAACAAGAATTAGAAGAAAAGCAGATCCTAACCGAGTCAGATGAACAAGAACAAGAGATGAAAATGTCAAGAACAATAAACTTTGAGGTAAGAACTGAATTTTACATAATAAGCCATGAGTATACCTCCTCCCTCCATCCACACATCATCTGA

mRNA sequence

ATGACACCTTCGCTGGATTCCGCTACCAACGGAGATAGTGACACACCTCCCCTACCACGTCGAATCTTGCCTCGAAGAGAAGGGAACTGGCTTCGTCGGCTGAGATACGTCGTCCAAGTCTTTACTTTATCAGACCTTCCACTTAGAACTGGTGCTGATAAACAAGAATTAGAAGAAAAGCAGATCCTAACCGAGTCAGATGAACAAGAACAAGAGATGAAAATGTCAAGAACAATAAACTTTGAGGTAAGAACTGAATTTTACATAATAAGCCATGAGTATACCTCCTCCCTCCATCCACACATCATCTGA

Coding sequence (CDS)

ATGACACCTTCGCTGGATTCCGCTACCAACGGAGATAGTGACACACCTCCCCTACCACGTCGAATCTTGCCTCGAAGAGAAGGGAACTGGCTTCGTCGGCTGAGATACGTCGTCCAAGTCTTTACTTTATCAGACCTTCCACTTAGAACTGGTGCTGATAAACAAGAATTAGAAGAAAAGCAGATCCTAACCGAGTCAGATGAACAAGAACAAGAGATGAAAATGTCAAGAACAATAAACTTTGAGGTAAGAACTGAATTTTACATAATAAGCCATGAGTATACCTCCTCCCTCCATCCACACATCATCTGA

Protein sequence

MTPSLDSATNGDSDTPPLPRRILPRREGNWLRRLRYVVQVFTLSDLPLRTGADKQELEEKQILTESDEQEQEMKMSRTINFEVRTEFYIISHEYTSSLHPHII

Homology

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BLAST of Csor.00g150020 vs. NCBI nr
Match: KAG6581294.1 (hypothetical protein SDJN03_21296, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 1.08e-65
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MTPSLDSATNGDSDTPPLPRRILPRREGNWLRRLRYVVQVFTLSDLPLRTGADKQELEEK 60
           MTPSLDSATNGDSDTPPLPRRILPRREGNWLRRLRYVVQVFTLSDLPLRTGADKQELEEK
Sbjct: 1   MTPSLDSATNGDSDTPPLPRRILPRREGNWLRRLRYVVQVFTLSDLPLRTGADKQELEEK 60

Query: 61  QILTESDEQEQEMKMSRTINFEVRTEFYIISHEYTSSLHPHII 103
           QILTESDEQEQEMKMSRTINFEVRTEFYIISHEYTSSLHPHII
Sbjct: 61  QILTESDEQEQEMKMSRTINFEVRTEFYIISHEYTSSLHPHII 103

The following BLAST results are available for this feature:

BLAST of Csor.00g150020 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g150020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581294.1	1.08e-65	100.00	hypothetical protein SDJN03_21296, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g150020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g150020 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g150020.m01	Csor.00g150020.m01	mRNA