![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Csor.00g149710 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGGTTCAAGTCAGCAGCATCCCAACCGAGGTTCTAACACCTACAATCATTTTAATCCAACAGATCAATGCAAATTTTAATGTACTTGTTCTGTCATCAAACAGAGCCAAACGGGAGACTACTCTTCCAGACATTGGAGGCGATGATCCATCGGTAAGTTTCTGAAGTTTTTGCATTTCTTCACTTCAATCTCTAAGAGATTTGGCACCCTGCTTAAAATTTAACAGGTGATCTACGTTAAACCCGGACTTGAGGCTGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGTAAGAGTTGAATGCAAATAGGACTAGTTATCAATGACAATGACCATATCTAAATAGTACAAGAATCAATCGGAAGAACTTAACAATATAGGCATTTTACAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCTCAGTGCAATGTAAGTGGTCTTCATGTCATTCAAGCTTTCACACGCAATCAAAAGACTAACAGAGAACTGTTAATTGCAGATATTGGAGCACAGAATGCTGCGTCTATAGACAAGAGGTGGTCTAGGCTTCTGGAGCTTAGAAAATCTCATTCATAG ATGAGGGTTCAAGTCAGCAGCATCCCAACCGAGGTTCTAACACCTACAATCATTTTAATCCAACAGATCAATGCAAATTTTAATGTACTTGTTCTGTCATCAAACAGAGCCAAACGGGAGACTACTCTTCCAGACATTGGAGGCGATGATCCATCGGTGATCTACGTTAAACCCGGACTTGAGGCTGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCTCAGTGCAATATATTGGAGCACAGAATGCTGCGTCTATAGACAAGAGGTGGTCTAGGCTTCTGGAGCTTAGAAAATCTCATTCATAG ATGAGGGTTCAAGTCAGCAGCATCCCAACCGAGGTTCTAACACCTACAATCATTTTAATCCAACAGATCAATGCAAATTTTAATGTACTTGTTCTGTCATCAAACAGAGCCAAACGGGAGACTACTCTTCCAGACATTGGAGGCGATGATCCATCGGTGATCTACGTTAAACCCGGACTTGAGGCTGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCTCAGTGCAATATATTGGAGCACAGAATGCTGCGTCTATAGACAAGAGGTGGTCTAGGCTTCTGGAGCTTAGAAAATCTCATTCATAG MRVQVSSIPTEVLTPTIILIQQINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS Homology
BLAST of Csor.00g149710 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30 Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 0
BLAST of Csor.00g149710 vs. NCBI nr
Match: KAG6581325.1 (Large ribosomal RNA subunit accumulation protein YCED-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 229 bits (584), Expect = 1.48e-75 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of Csor.00g149710 vs. NCBI nr
Match: XP_022934819.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucurbita moschata]) HSP 1 Score: 227 bits (579), Expect = 1.53e-72 Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Csor.00g149710 vs. NCBI nr
Match: XP_022983268.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita maxima]) HSP 1 Score: 223 bits (569), Expect = 5.02e-71 Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 0
BLAST of Csor.00g149710 vs. NCBI nr
Match: XP_022983267.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 206 bits (524), Expect = 7.00e-64 Identity = 115/144 (79.86%), Postives = 116/144 (80.56%), Query Frame = 0
BLAST of Csor.00g149710 vs. NCBI nr
Match: XP_023527889.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >XP_023527890.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 194 bits (492), Expect = 5.68e-60 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of Csor.00g149710 vs. ExPASy TrEMBL
Match: A0A6J1F3N3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1) HSP 1 Score: 227 bits (579), Expect = 7.39e-73 Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of Csor.00g149710 vs. ExPASy TrEMBL
Match: A0A6J1J7A5 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1) HSP 1 Score: 223 bits (569), Expect = 2.43e-71 Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 0
BLAST of Csor.00g149710 vs. ExPASy TrEMBL
Match: A0A6J1IYU4 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1) HSP 1 Score: 206 bits (524), Expect = 3.39e-64 Identity = 115/144 (79.86%), Postives = 116/144 (80.56%), Query Frame = 0
BLAST of Csor.00g149710 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1) HSP 1 Score: 194 bits (492), Expect = 2.75e-60 Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of Csor.00g149710 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1) HSP 1 Score: 192 bits (488), Expect = 1.11e-59 Identity = 96/99 (96.97%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of Csor.00g149710 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) ) HSP 1 Score: 134.0 bits (336), Expect = 7.7e-32 Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 0
BLAST of Csor.00g149710 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) ) HSP 1 Score: 134.0 bits (336), Expect = 7.7e-32 Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|