Csor.00g149160 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g149160
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Splicing factor subunit
Location	Csor_Chr14: 5409165 .. 5410565 (-)
RNA-Seq Expression	Csor.00g149160
Synteny	Csor.00g149160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTACTGACTACACTTGGAACATCGTATTTATTGTCTAACATCGTATTTATTGTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCCCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACATTTATTCCGAATTTTAGGTTGTGTTTCGATTTAGTTGGGCAGTAATTAGACAGCCCGGCGACTGAGTCCAATTTGTTTCTTTCGTTTCTATTTCCGCTGATTCAAGCCTTAGGAGATGATTTTCTAAATTCACTTCCTGATCCTGTTCGTATTACTCAACCTTTTCGTTTTGTTCATCGGAGGCCTTCTCTGTTGCGATATTCCTGAATCCTTAATTTATGGGAGATAAGGAATTTTCTACTACTTTCTCACTGGGAATCACTCTCACGAAGGAAAAAAGATCTACTTTTTTATTTGGGGTTTGTTTGTTTCTAGTAACGATATTATGTTGAGTCTTGAATTACTATTGAGTTGGTTAGTGTAATAAGTGGATGTCAGACCTTTTAATCGGTAATTCATCTTTGAAATTTGAGATTGATTGTGGATTCCTGTCACTGCTCGCTGGAGGTTGGTTTAGATGGACACGAGGCGCTAATGTTGGTTTTTGATTTGGATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAGGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTGTTAGTTTTGTATTCCTTCTTGAGTGTTGATCTTATTATATTGCTTTGCATATTAGTTTTGATGTCTAAATTCAGATGTTGGTGTGTACAGTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGGTTAATAACTTCTTCTTTCTTTATGATTATTACCCCTTTAACTTGCCTTCCTCCCATGAACATGAGAGTTTCAAGTCCTATTATATGATTTTCGAGTAATTACTCCATCCATGTATATGAATTGTTTGTTATCTTCACTTGATCCACTCTGCGTGCTATAATCTAAACTGGGTTTGTGCTGCTTCTGTGTTTCGAATTGTGGGGTTAAACCCATCATGTTTGTAACTAGCATTCATTCCATTCTTAACGAGGGATAGCAAAACTTCATCATATATCCTCCTGGATATCATTTCGGGCATAGTTAGATACTTAAGGGGTTGTTCTTCTTCTTTTTTCTTTTCCTTTTTTTGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

mRNA sequence

ATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAGGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Coding sequence (CDS)

ATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAGGCGAAATATGTGGGAACTGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCATACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Homology

[Close]

BLAST of Csor.00g149160 vs. ExPASy Swiss-Prot
Match: Q9LW64 (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy Swiss-Prot
Match: P58728 (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy Swiss-Prot
Match: Q9VHI4 (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-28
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 RERYNFMQKMLLPCGLPPEREDD 88
          R R+N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]

BLAST of Csor.00g149160 vs. ExPASy Swiss-Prot
Match: Q56K13 (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Csor.00g149160 vs. ExPASy Swiss-Prot
Match: Q9BWJ5 (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.1e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Csor.00g149160 vs. NCBI nr
Match: XP_015887858.1 (uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022925775.1 uncharacterized protein At4g14342 [Cucurbita moschata] >XP_022947444.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita moschata] >XP_022947450.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita moschata] >XP_022974505.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita maxima] >XP_022974506.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita maxima] >XP_022978791.1 uncharacterized protein At4g14342 [Cucurbita maxima] >XP_023521267.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023539132.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023543147.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023919041.1 uncharacterized protein At4g14342 [Quercus suber] >XP_023919042.1 uncharacterized protein At4g14342 [Quercus suber] >XP_030550068.1 uncharacterized protein At4g14342 [Rhodamnia argentea] >XP_030550069.1 uncharacterized protein At4g14342 [Rhodamnia argentea] >XP_030923579.1 uncharacterized protein At4g14342 [Quercus lobata] >XP_031376227.1 uncharacterized protein At4g14342 isoform X2 [Punica granatum] >XP_031376228.1 uncharacterized protein At4g14342 isoform X3 [Punica granatum] >XP_031377923.1 uncharacterized protein At4g14342 isoform X1 [Punica granatum] >XP_031377924.1 uncharacterized protein At4g14342 isoform X2 [Punica granatum] >XP_038892844.1 uncharacterized protein At4g14342 isoform X1 [Benincasa hispida] >KAF3968442.1 hypothetical protein CMV_007664 [Castanea mollissima] >KAG6581380.1 hypothetical protein SDJN03_21382, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028825.1 hypothetical protein SDJN02_10007 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6597361.1 hypothetical protein SDJN03_10541, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034664.1 hypothetical protein SDJN02_04394, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (465), Expect = 2.03e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. NCBI nr
Match: XP_021593515.1 (uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacterized protein At4g14342 isoform X1 [Hevea brasiliensis] >XP_021640396.1 uncharacterized protein At4g14342 isoform X2 [Hevea brasiliensis] >KAF2313992.1 hypothetical protein GH714_021376 [Hevea brasiliensis] >KAG8636795.1 hypothetical protein MANES_15G041801v8 [Manihot esculenta])

HSP 1 Score: 183 bits (464), Expect = 2.89e-58
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. NCBI nr
Match: XP_038719409.1 (uncharacterized protein At4g14342 [Tripterygium wilfordii] >KAF5738559.1 splicing factor 3b subunit [Tripterygium wilfordii])

HSP 1 Score: 183 bits (464), Expect = 2.89e-58
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPVLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. NCBI nr
Match: XP_004134645.1 (uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 PREDICTED: uncharacterized protein At4g14342 isoform X1 [Cucumis melo] >ADN34023.1 splicing factor 3b subunit [Cucumis melo subsp. melo] >KAA0052597.1 uncharacterized protein E6C27_scaffold120G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 2.89e-58
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. NCBI nr
Match: XP_030503017.1 (uncharacterized protein At4g14342 [Cannabis sativa] >XP_034686518.1 uncharacterized protein At4g14342 isoform X2 [Vitis riparia] >PON94782.1 Splicing factor 3B, subunit [Trema orientale] >CBI23659.3 unnamed protein product, partial [Vitis vinifera] >KAF4346500.1 hypothetical protein G4B88_001109 [Cannabis sativa] >KAF4347074.1 hypothetical protein G4B88_018130 [Cannabis sativa] >KAF4353310.1 hypothetical protein G4B88_015264 [Cannabis sativa])

HSP 1 Score: 182 bits (463), Expect = 4.11e-58
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy TrEMBL
Match: A0A6J1IBJ4 (Splicing factor subunit OS=Cucurbita maxima OX=3661 GN=LOC111473181 PE=3 SV=1)

HSP 1 Score: 183 bits (465), Expect = 9.85e-59
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy TrEMBL
Match: A0A218VSR0 (Splicing factor subunit OS=Punica granatum OX=22663 GN=LOC116191992 PE=3 SV=1)

HSP 1 Score: 183 bits (465), Expect = 9.85e-59
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy TrEMBL
Match: A0A6J1EJ56 (Splicing factor subunit OS=Cucurbita moschata OX=3662 GN=LOC111433082 PE=3 SV=1)

HSP 1 Score: 183 bits (465), Expect = 9.85e-59
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy TrEMBL
Match: A0A6P4A3S7 (Splicing factor subunit OS=Ziziphus jujuba OX=326968 GN=LOC107422867 PE=3 SV=1)

HSP 1 Score: 183 bits (465), Expect = 9.85e-59
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. ExPASy TrEMBL
Match: A0A5A7UDP6 (Splicing factor subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G002040 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.40e-58
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Csor.00g149160 vs. TAIR 10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Csor.00g149160 vs. TAIR 10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-45
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

The following BLAST results are available for this feature:

BLAST of Csor.00g149160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW64	2.2e-44	93.10	Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P...	[more]
P58728	2.2e-44	93.10	Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P...	[more]
Q9VHI4	2.2e-28	66.27	Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV...	[more]
Q56K13	9.1e-27	60.71	Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1	[more]
Q9BWJ5	9.1e-27	60.71	Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1	[more]

BLAST of Csor.00g149160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015887858.1	2.03e-58	100.00	uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022925775.1 uncharacteri...	[more]
XP_021593515.1	2.89e-58	98.85	uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacte...	[more]
XP_038719409.1	2.89e-58	98.85	uncharacterized protein At4g14342 [Tripterygium wilfordii] >KAF5738559.1 splicin...	[more]
XP_004134645.1	2.89e-58	98.85	uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 PREDICTED: u...	[more]
XP_030503017.1	4.11e-58	98.85	uncharacterized protein At4g14342 [Cannabis sativa] >XP_034686518.1 uncharacteri...	[more]

BLAST of Csor.00g149160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBJ4	9.85e-59	100.00	Splicing factor subunit OS=Cucurbita maxima OX=3661 GN=LOC111473181 PE=3 SV=1	[more]
A0A218VSR0	9.85e-59	100.00	Splicing factor subunit OS=Punica granatum OX=22663 GN=LOC116191992 PE=3 SV=1	[more]
A0A6J1EJ56	9.85e-59	100.00	Splicing factor subunit OS=Cucurbita moschata OX=3662 GN=LOC111433082 PE=3 SV=1	[more]
A0A6P4A3S7	9.85e-59	100.00	Splicing factor subunit OS=Ziziphus jujuba OX=326968 GN=LOC107422867 PE=3 SV=1	[more]
A0A5A7UDP6	1.40e-58	98.85	Splicing factor subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Csor.00g149160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23325.1	1.5e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT4G14342.1	1.5e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 5..82 e-value: 1.3E-36 score: 124.5
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PANTHER	PTHR20978	SPLICING FACTOR 3B SUBUNIT 5	coord: 2..74
IPR017089	Splicing factor 3B, subunit 5	PIRSF	PIRSF037010	SF3B5	coord: 1..87 e-value: 1.1E-39 score: 132.4
None	No IPR available	PANTHER	PTHR20978:SF3	SPLICING FACTOR SUBUNIT	coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g149160.m01	Csor.00g149160.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005686	U2 snRNP