Csor.00g148870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g148870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-binding protein DDB_G0278111-like
Location	Csor_Chr14: 5516938 .. 5520318 (+)
RNA-Seq Expression	Csor.00g148870
Synteny	Csor.00g148870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTCGCCAATATCACCTTCATGTTGTCGATTCATTTTTAGTGTGTGGAAGCCCTGCAGTTTGCGATGTAATCGAATGTTGCTTCAACTTGATTTCACCCTTGAACCCCGCTTGACCAAATGTGTGTCTCTCCGTTTTGCTTCAGCAATATTTCTTCTGTTCCTAATCGGGGATTGGCTTTTATCGAAGTTATTTACTTGCTTTTTCCCCCTGCTCGTACAAGAATTCTTCAAGATTAGGATTAGATTAGAAACTGTTCGTCCATTTTCAGGTGAAATATATGAATATATCTACAGACAAGCTCATGCGTACGCTACGCATAGAGTAGTTAGTGGTTTTTGGATTTGAAAAAAATTGATTTGATACATTTATGTTCACGCTGCAGTTTGTGCCAAATGAAGCGACATAGGATGTTTTGTTCATGTCTCATTACTGCGTAAGGGTGAGAAGGGTTACATATGTCATGTATGTATGGCAACTTTACTTGTTGGATGTCAAGAATGGTCATTTAAAGGGAGAAAAATCTCTATTTTAGTTGGTTTCTTCCCCATCATTTTTATTTTGAACAATCAAAAGGTTATTGATTACAATAGAGGACCATTAAAAATCTGTTGCTACAACCTTACCAAGTGATTTTAATCTTATAACTTATAAGTTCGATTGCTTAGCTTGGCACGGCAAGCTTAGCTGCTTATATTATCTAAGTAGCAAGTGCCCATGACTTTCAATATTTGGCATCCGATAAACTCTTATCTTTTCTTTTCGTGCCATTTTCTTATCTAAGTTGAGTTTTAAATTGAATAATTGACCCTCATACAGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGTGGTAAGCTGTAATTTTTTTGTTTACATACGTAGTAACTGCTTACTTGATCGTGGACATCTTTGCTGACTTCTAATGATGATTAGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGGTTCTCAATTTTATTTTCATTAGTTTTTAGTTGCTACTTTCATTATTCAAGTCCTGCTTTATTGTGCATATGAATGATAACAATTACTTTCACTTTCAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACGTAAGTATATTCTTCAACTTTGGAGTAAGCTAGTTCCTTATATCTATGTGATCTTTGACTGTCTCAATATGGATTTTTTCCGAGCTATTTTTGTTTCTGGACCTAACTCACATCCTAAGTTAACCATGAAATTAATGTAAGTTTACGTTTGCGATGCTATTAATGTGTGGTTGAATATTGAATTTATATGGTAACCTATGTGTCGATTTGGAATTTTGAAGCTGCTTCAAGTTCAATCATTTACTGGACTTGAAAGTAAGGGTAGGGTACAACAACTTTGCGGGCTGCTGTTAGTGGGAATTGTGGAAATGAGGTCAGGATTGATATTTCAATACATTTGCAGCTTTCATTTTGTCTGCAAGTGCGAAAGAGTTCTGTTATTTCCCTTCATTTTTAACGCGACAGTTGAGATTTGCTGTCATCTTGTCCTCTTGCAGGATTTGGAGGCACAGTCTTAGTCTTTCGTGCTCTCCTTCATGAATACAATTATTGTTTCTGGATTTGACCGTGATTGGAATTCTGTTTACTGCACAAGTACACAAGATGTATCAATATGATAACAATGTTGGCATCAATATGATAACAATGTTGGCATCAATATGATAACAAGGTTCCAGGAAACCCACCCATGTACTCATTCTTACGCCAATAAAGTTAGAAATGCCGGCAAATCATTTTTCTAACCTTTTGCTTGAGTTGGGTCTGTTAGTTATTTAGGAGAAAGAGAAACTTTTGTTGGCCATGGTTTTTAGGAGTGCAAAAGTTTTCTCGTCTCATGCTACCAAGGCCATCGTATTAAGCACTATGACTGGAGAGAACCCCCTTTTTTTTTCTTTTGAATGAGAAGCGGTGTATGGATTGGGTTGAAGCTTTAGAACATAGCTAAGTTTTTTGTTAGTTCAATTTAGATCTACATTGGTATGGAGACTCGGAGAATGGGAGGAAGTGGATTTTAACCTACACATATAATGCAAAAACTGTTTCTCACAAAAACACTCTCAAAAGGTCAAGAGAGTGACGAAAACTATCCCTTGCCCTTAGAATAAGGCTCACACTTCGTATTACTCAACCTTAGCGTGCTTGTAGATAGTATCCTTCTATTGACAAATTGTACTTTTCCTCATCCATCAACCCCACATTGACTCCCCCTCCCTGAAAGAAAGAGAGAAAAAAGATTCTCTGAATTGGATTTAAATCTCATTGGTTCAGTTTAAGGATGAATTTCATTGCATTCTTTCAATTTTGAGGCTGAACTAACTCGGACATTCTTCATTATAGACCATCCTCTTGATTAGAATTTTTATGCTGGTCGTAGATAACCTTGTCATTTTTCTAAGTGGTTACTGATCCTCTCTTTTAAATCACCATTCACGATTCTCAATTCTTTTGTATATTTTTGTTTCTTAATTGAAGTTGAATACCTGTCAAGTGTACTTTTTGCAGCTTTGCTTGTGAGTAGATTTGTGGTTTTTGCATTGATACCCTTGGCTGTACAACATTATTATCAAATAAGATTGCTAAACTAAAAGTAAAGATTTGGATTGGTTATAGGTTTCTTTTTTTTTTTTTTTTTTTTTTTGGGTGGGGGGGTATTAAATGTTGATATTACCAGATCTAGTTTTGTCTCAAGCCTTTGGAAAATTAGATGTCATTCTTGTCAAACTGTGGTTTGCTATTAGCTGGCATGGAGATGGAACGGGCAAATTGTGCCCAGTTGGTCATTACTGCAACTAGGTTACTGGCAGTTTTGCCTTATTCATACTCATTTTTCCCCTGTGCTTTTATGCAGTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTCAGTAGTATATCATTTTAGTTTCTCTGACAAAAATGTTGCACCTACATTTAATTGAGAATATGGCAACACCAGTGTGAATGAAGCAACGGATTTTACCATTTTTTTTTTTCAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTTACTGTGAGTTTTCATTGCTTACTTCCGCCTGCTGAATTTTGGTATGTTCATGTCCTGATGGTATTTGTATATTCTCATTATTCTCCAGATACAAAGGCGTCGGAGCGTTCTTGATGATGATGATTAG

mRNA sequence

ATGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGTGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTTACTATACAAAGGCGTCGGAGCGTTCTTGATGATGATGATTAG

Coding sequence (CDS)

ATGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGTGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTTACTATACAAAGGCGTCGGAGCGTTCTTGATGATGATGATTAG

Protein sequence

MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD

Homology

[Close]

BLAST of Csor.00g148870 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 58/114 (50.88%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 15  QELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKAR 74
           Q+L   +G G   +PE Q+ QE  + EA ERRQ +L QIL+  ARERL+RI +VKPEK+R
Sbjct: 9   QQLSQMQGQGF--DPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSR 68

Query: 75  GVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD 129
            +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T +T++RR   ++DDD
Sbjct: 69  QIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR--TIEDDD 117

[Close]

BLAST of Csor.00g148870 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHG------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Csor.00g148870 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRKQRLAELQAKHG------DPGDAAQQEAKQREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Csor.00g148870 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHG------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Csor.00g148870 vs. ExPASy Swiss-Prot
Match: O13929 (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC23C4.09c PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-15
Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 0


Query: 3   DPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERL 62
           D EL+AIRQ R+ +L A+ G    N      + ++ +   +E RQ +LSQIL   AR+RL
Sbjct: 2   DEELQAIRQARLAQLQAEHGSAPSNIASGPSSNQQQQEVQDEMRQNLLSQILEHPARDRL 61

Query: 63  ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRS 122
            RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE+I+ + +K+ +  I   R 
Sbjct: 62  RRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRR 121

Query: 123 VLDDDD 129
           V DD+D
Sbjct: 122 VQDDED 127

[Close]

BLAST of Csor.00g148870 vs. NCBI nr
Match: XP_022925642.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978919.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita maxima] >KAG6581408.1 Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034694.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227 bits (578), Expect = 2.37e-74
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Csor.00g148870 vs. NCBI nr
Match: XP_022925641.1 (DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata] >XP_022978918.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 225 bits (573), Expect = 1.67e-73
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Csor.00g148870 vs. NCBI nr
Match: XP_023543163.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224 bits (571), Expect = 2.76e-73
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Csor.00g148870 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 223 bits (568), Expect = 7.93e-73
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVL+DDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of Csor.00g148870 vs. NCBI nr
Match: XP_023543162.1 (DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222 bits (566), Expect = 1.95e-72
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Csor.00g148870 vs. ExPASy TrEMBL
Match: A0A6J1IVC3 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 1.15e-74
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Csor.00g148870 vs. ExPASy TrEMBL
Match: A0A6J1EC84 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432996 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 1.15e-74
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Csor.00g148870 vs. ExPASy TrEMBL
Match: A0A6J1IUM6 (DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 8.08e-74
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Csor.00g148870 vs. ExPASy TrEMBL
Match: A0A6J1ECS1 (DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432996 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 8.08e-74
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Csor.00g148870 vs. ExPASy TrEMBL
Match: A0A6J1KTQ8 (DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC111497139 PE=3 SV=1)

HSP 1 Score: 221 bits (563), Expect = 2.22e-72
Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVL+DDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of Csor.00g148870 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 184.1 bits (466), Expect = 7.0e-47
Identity = 108/129 (83.72%), Postives = 118/129 (91.47%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGV---GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++G+   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTI 120
           ARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT 
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTY 120

Query: 121 QRRRSVLDD 127
           QRRR V DD
Sbjct: 121 QRRRGVDDD 129

[Close]

BLAST of Csor.00g148870 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 183.7 bits (465), Expect = 9.1e-47
Identity = 108/130 (83.08%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGV----GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSM 60
           M DPELEAIRQRRMQELMA++G+    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS 
Sbjct: 1   MADPELEAIRQRRMQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSS 60

Query: 61  QARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT 120
           QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT
Sbjct: 61  QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVT 120

Query: 121 IQRRRSVLDD 127
            QRRR V DD
Sbjct: 121 YQRRRGVDDD 130

[Close]

BLAST of Csor.00g148870 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 174.5 bits (441), Expect = 5.5e-44
Identity = 102/126 (80.95%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGV---GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++G+   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTI 120
           ARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT+
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTV 120

Query: 121 QRRRSV 124
               +V
Sbjct: 121 STNGAV 126

The following BLAST results are available for this feature:

BLAST of Csor.00g148870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	1.5e-17	50.88	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	1.1e-15	42.97	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
P56812	1.1e-15	42.97	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]
Q5RBT0	1.1e-15	42.97	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
O13929	1.8e-15	42.86	Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Csor.00g148870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925642.1	2.37e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978...	[more]
XP_022925641.1	1.67e-73	100.00	DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata] >XP_022978...	[more]
XP_023543163.1	2.76e-73	99.22	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038881892.1	7.93e-73	97.66	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]
XP_023543162.1	1.95e-72	99.21	DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g148870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVC3	1.15e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EC84	1.15e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IUM6	8.08e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1ECS1	8.08e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KTQ8	2.22e-72	96.88	DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC11149713...	[more]

BLAST of Csor.00g148870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	7.0e-47	83.72	double-stranded DNA-binding family protein	[more]
AT1G29850.2	9.1e-47	83.08	double-stranded DNA-binding family protein	[more]
AT1G29850.3	5.5e-44	80.95	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 9..120 e-value: 5.1E-31 score: 107.2
IPR002836	PDCD5-like	PIRSF	PIRSF015730	TFAR19	coord: 1..128 e-value: 4.1E-38 score: 128.3
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 1..126
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 2..110 e-value: 2.2E-34 score: 119.7
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 9..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..46
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g148870.m01	Csor.00g148870.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding