Csor.00g148760 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g148760
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	high mobility group B protein 14
Location	Csor_Chr14: 5555959 .. 5558660 (-)
RNA-Seq Expression	Csor.00g148760
Synteny	Csor.00g148760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGCGAAAAAGCCCCAGAAATCACCTTCAACCGCGGCGCATGATTCTTCCGAAGCGTTCGAAGAAGCGTCACAAGAGTAAATACTACGCCCCAAAACCCTGCTCCTTTAAATTCACGGTCATCGTTTTCCGAGCAATCCTTCTGAATTTTCTTTTGGCTTACAAGAACAAGAAAAACCATGAATCAAAGTAATAGCGCGTAATGAGTACACTGAACGTCTTATACTGTTTAGAATACTTGAGCAGGACTGCTTGCTTTAGCTCTTTCAAGTGTTTCCTTTCTCTCTTGATGTTACGATGAATTGAACTCTGAGTTGCTACTTTTAATTATGGGAATGAGTTATGTGAATTTCGATCCCGTTGGGGTTTTGAAGTTTATTCAGTTACAAAAAAACGTTGATTGTTAAAATGATTACCAAAGTCCATAATTTGTTCCCCTTCCCCCCCATTTCTGAGTATGTTGTTCATTACAAATTTTGTGGAAATCTTCAGGGCTACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGTCAGCAAAAGGTCGCAGATTTAATAACACGGAGAAGAGTACGAAGACAAATAAGAGGCCAAAATCAAATCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCGAAGAAGCCACCTACTGCTTTCTTTTACTTTTTGTACGTTCCCTTCTCTTACTGTCATCTCATTTAAGAAGTTACTTTGTTGAGCACTTGAATTACGTAAGTCAATCTTAAACATTTTCATGGTTCTAATGCACACATGTTAATGGAGGGGTATCGTAAAATTTCATGACAAACTTGATTTGGTTATGAACGTATGGCTTTTGGCTTTTTAAGTGGCTGTAATATGAACTACTTGCAATCTGTAAGAGTAACGCTCATATGCTTATACGCAATGCATTTTGTTCTTCATTTTGTATTTATGACCATCATGATTATCCTCTTGTAGTTGTCTGCCAAATGCTTCTTTAAGTCTGAACTTAATGGAGTACTTTTCATGCCTCATATGTATATTTTTGGGTGGATATGGTTTGATATTGCAGCTTCAATGTGAGGTTTTGAGCCCGTTGAGGCCGTCCTGCTCATGTATACACCTAAGAGATGATACTTACATGCTTTTGTGAACTCATGCTGATTTGGAACTTGTAATTTTGAAAATCTAATTGAAATATCCAAAGTATCTTGAGTAGAAGAGATGGACTTGTAGAACTGCATCAGTAGCTGCTGTAAGTTTCTATGATAGATATTTGAAGTGACTTATTGAGCTAAAGTATTATTTATTTATTTATTATTTTTTATAGTTGAGAACAGTCATCTTTTGCACACTGTTGATTTCTAAATTTTTTAATGGATTGAATCATCCTAGTCATACTTCTTGATTCATGAAATGTACTTAATTTGTTGGGTGTCGCCTTGCAATGTTGTTTTTCACTTCATCGTTATCATATTCAGCATATGCAGTCGAACAGTTGGGATAGCAAGAAGAGTTTTCCTTTAGTCTTCTTAGCACGCTTATTGTAGTACCATATTTGATCAAACTTGGCACCATTTAGGACTTCAGCTTACAGAACTTAATTGTATTTTCATTCTCAAGGGATGACTTCCGCAAGGAATTTCAAGAACAGAATCCAGATGTCAAGTCGATGCGCGATGTAAGTTTGGGAAAGTTGAATGCTAGTCCCTCTGGCTTTGTTGGGTTTCCTCCCATCTGTTTATCCTTTCTCACTCAGTCTATTCTTACCTTGATACTTTTGATTCCATACCTCAGGTTGGCAAGGCATGTGGGGAGAAATGGAAAACAATGACATATGAGGTTAATGTTCTGTCGATGTTTAACTTTGTCTAAATTTTGTGATTGATAAGAACTTCTGAGAGATCTCACATTGGTTGGAGAAGGAAACGAAACATTCCTGATAAGGGTGTGGAAACCTCTCCGTAGTAGACGCGTTTTAAAACCTTGAGGGTAAGCCCAAAAGGGAAAGCTCAAAGAGGACAATATTTGCTAGCGGTGGGTTTGGGCTGTTACAACTTCAGTTTATTCTCTATGCAAAACTTAGATTGTTATGAATCCTAGAAATTTAGTTTTCATTGATTTACCTTCAAGCTTTCTTGACATAGGCACGAATATGGGGTTTTTACTTTGTTGTTACTTTTTTCCCTCTTCCTTCTGGGGGTGGGGGTTATTGAGGGGTGGTTTGGAATCCGGTTAGAAAAGTCACAGAATCATGCAGCTTATTATTGTTTCTTTCTATCAAAACAAAAATATGTATATATCATGCAGCTGGTTTACACTTCTTATTATAGGTTATTAGTTCGAATTGTGACTCGGTTTATGAAATATTCATTATGGAAGTTGATGGCATCATAGAAGCTAAATTACTATTTTCTTTTTCCAAAAAAGAACAACAACCTAAAAGCTCCATGTATTTGGCTTCTTATATCAGGAAAAAGTACAATATTATGATATTGCTACGGAGAAACGTGCGGAGTTTGATAAAGCCATGGCAGAATATAAGAAGAGGAAGGTAAGCTCTGCCTTGAGTTTGCTGATTTTATATAGAACAGAAAAATCATTCCATGTTTTGGGAGATAAAAACAGAGAATGAGCTTTTAACAACCCATTGCAGGAAAGTGGAGTAGATCAAGAATCTGAGGAAGATTGGGAGATTGATGAATAA

mRNA sequence

ATGGCGAAAGCGAAAAAGCCCCAGAAATCACCTTCAACCGCGGCGCATGATTCTTCCGAAGCGTTCGAAGAAGCGTCACAAGAGGCTACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGTCAGCAAAAGGTCGCAGATTTAATAACACGGAGAAGAGTACGAAGACAAATAAGAGGCCAAAATCAAATCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCGAAGAAGCCACCTACTGCTTTCTTTTACTTTTTGGATGACTTCCGCAAGGAATTTCAAGAACAGAATCCAGATGTCAAGTCGATGCGCGATGTTGGCAAGGCATGTGGGGAGAAATGGAAAACAATGACATATGAGGAAAAAGTACAATATTATGATATTGCTACGGAGAAACGTGCGGAGTTTGATAAAGCCATGGCAGAATATAAGAAGAGGAAGGAAAGTGGAGTAGATCAAGAATCTGAGGAAGATTGGGAGATTGATGAATAA

Coding sequence (CDS)

ATGGCGAAAGCGAAAAAGCCCCAGAAATCACCTTCAACCGCGGCGCATGATTCTTCCGAAGCGTTCGAAGAAGCGTCACAAGAGGCTACGGGATTATGTGTAAAAAGAAGCGAAGAGATGAAAAGGTCAGCAAAAGGTCGCAGATTTAATAACACGGAGAAGAGTACGAAGACAAATAAGAGGCCAAAATCAAATCAGAAGAAGAAAAATGATAAATTTGATGTCAATAAGCCGAAGAAGCCACCTACTGCTTTCTTTTACTTTTTGGATGACTTCCGCAAGGAATTTCAAGAACAGAATCCAGATGTCAAGTCGATGCGCGATGTTGGCAAGGCATGTGGGGAGAAATGGAAAACAATGACATATGAGGAAAAAGTACAATATTATGATATTGCTACGGAGAAACGTGCGGAGTTTGATAAAGCCATGGCAGAATATAAGAAGAGGAAGGAAAGTGGAGTAGATCAAGAATCTGAGGAAGATTGGGAGATTGATGAATAA

Protein sequence

MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE

Homology

[Close]

BLAST of Csor.00g148760 vs. ExPASy Swiss-Prot
Match: O64702 (High mobility group B protein 14 OS=Arabidopsis thaliana OX=3702 GN=HMGB14 PE=2 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-33
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 0


Query: 32  LCVKRSEEMKRSAKGRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91
           L VK SE  +RS + R         +  ++PK++ KKK  K     PKKP TAFF+FLDD
Sbjct: 25  LAVKSSEGARRSTRLR--------LQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDD 84

Query: 92  FRKEFQEQNPDVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKE 151
           FRK++QE+NPDVKSMR++GK CGEKWKTMTYEEKV+YYDIATEKR EF +AM EY KR E
Sbjct: 85  FRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKRME 144

Query: 152 SGVDQESEEDWEIDE 167
           SG   ESE D +  E
Sbjct: 145 SGAHDESETDSDYSE 151

[Close]

BLAST of Csor.00g148760 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 46  GRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKS 105
           G+R    EK TK     +  +K+K  K D NKPK+ P+AFF FL+DFR  F+++NP+VK+
Sbjct: 26  GKRKAPAEKPTK-----RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKA 85

Query: 106 MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEID 165
           +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K  E G D+  +   EI+
Sbjct: 86  VSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIN 141

Query: 166 E 167
           +
Sbjct: 146 D 141

[Close]

BLAST of Csor.00g148760 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-15
Identity = 44/106 (41.51%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 55  STKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACG 114
           +TK  K+P   ++ K    D NKPK+PP+AFF F+ DFR+++++ +P+ KS+  VGKACG
Sbjct: 26  ATKGGKKPAKGKEPK----DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACG 85

Query: 115 EKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEE 161
           E+WK+++ EEK  Y D A +K+ E++  +  Y K+ E   D+E  +
Sbjct: 86  EEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEGSD 127

[Close]

BLAST of Csor.00g148760 vs. ExPASy Swiss-Prot
Match: Q42344 (High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 54  KSTKTNKRPKSNQKK--KNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGK 113
           ++T T++R K+  +K  K  K D N+PK+PP+AFF FL+DFRKEF   NP+ KS+  VGK
Sbjct: 9   EATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGK 68

Query: 114 ACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEED----WEIDE 167
           A G +WK MT E+K  Y   A  ++ E+ K + +Y  +  SG ++E ++      E+DE
Sbjct: 69  AAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEVDE 127

[Close]

BLAST of Csor.00g148760 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 42  RSAKGRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNP 101
           + AK +    + K + T K  K   + K    D NKPK+P +AFF F++DFR+ F+++NP
Sbjct: 2   KGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENP 61

Query: 102 DVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEED 161
             KS+  VGKA G+KWK+++  EK  Y   A +++ E++K +  Y K+ E G  ++ E D
Sbjct: 62  KNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESD 121

Query: 162 WEIDE 167
             + E
Sbjct: 122 KSVSE 126

[Close]

BLAST of Csor.00g148760 vs. NCBI nr
Match: KAG6581419.1 (High mobility group B protein 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312 bits (799), Expect = 8.08e-107
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. NCBI nr
Match: XP_022926030.1 (high mobility group B protein 14 [Cucurbita moschata] >XP_022926031.1 high mobility group B protein 14 [Cucurbita moschata] >KAG7034701.1 High mobility group B protein 14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310 bits (793), Expect = 6.65e-106
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPSTAAHDSSEAFEEASQE TGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. NCBI nr
Match: XP_022978337.1 (high mobility group B protein 14 [Cucurbita maxima])

HSP 1 Score: 304 bits (779), Expect = 9.06e-104
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPSTAAHDSSEAFEEASQE TGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACG+KWKTM
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGKKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIA EKRAEFDKAMAEYKKRKESGVD+ESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIAMEKRAEFDKAMAEYKKRKESGVDRESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. NCBI nr
Match: XP_023544425.1 (high mobility group B protein 14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303 bits (776), Expect = 2.60e-103
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPSTAAHDSSEAFEEASQE TGLCVKRSEEMKRSAK RRFN+TEKSTKTNK
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKARRFNSTEKSTKTNK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           RPKSNQKKKNDK DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM
Sbjct: 61  RPKSNQKKKNDKIDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. NCBI nr
Match: XP_038881049.1 (high mobility group B protein 14 isoform X1 [Benincasa hispida])

HSP 1 Score: 280 bits (715), Expect = 5.17e-94
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPS +AHDSSEAFEEAS E TGLCVKRSEEMKR+AK  RFN   K TKT K
Sbjct: 1   MAKAKKPQKSPSASAHDSSEAFEEASPEDTGLCVKRSEEMKRAAKASRFNTDNKRTKTIK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           +PKS QKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVK+MRDVGKACGEKWKTM
Sbjct: 61  KPKSKQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIAT+KRAEFDKAMAEYKKRKESG+DQESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIATQKRAEFDKAMAEYKKRKESGLDQESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. ExPASy TrEMBL
Match: A0A6J1EJV4 (high mobility group B protein 14 OS=Cucurbita moschata OX=3662 GN=LOC111433268 PE=4 SV=1)

HSP 1 Score: 310 bits (793), Expect = 3.22e-106
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPSTAAHDSSEAFEEASQE TGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. ExPASy TrEMBL
Match: A0A6J1IKU3 (high mobility group B protein 14 OS=Cucurbita maxima OX=3661 GN=LOC111478363 PE=4 SV=1)

HSP 1 Score: 304 bits (779), Expect = 4.39e-104
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAKKPQKSPSTAAHDSSEAFEEASQE TGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK
Sbjct: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEDTGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACG+KWKTM
Sbjct: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGKKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEIDE 166
           TYEEKVQYYDIA EKRAEFDKAMAEYKKRKESGVD+ESEEDWEIDE
Sbjct: 121 TYEEKVQYYDIAMEKRAEFDKAMAEYKKRKESGVDRESEEDWEIDE 166

[Close]

BLAST of Csor.00g148760 vs. ExPASy TrEMBL
Match: A0A1S3AZW3 (high mobility group B protein 14 OS=Cucumis melo OX=3656 GN=LOC103484380 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 1.13e-80
Identity = 135/165 (81.82%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAK  QKSPS +AHDSSE    AS E TGL VKR +EMK +AK  RFN   K TKT K
Sbjct: 1   MAKAKNLQKSPSASAHDSSE----ASSEVTGLRVKRRKEMKSAAKASRFNTDNKRTKTIK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           +PKS QKKKND+FDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVK+MRDVGKACGEKWKTM
Sbjct: 61  KPKSKQKKKNDRFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEID 165
           TYEEKVQYYDIATEKRAEFDKAM EYKKR ESG+ QESEEDWEID
Sbjct: 121 TYEEKVQYYDIATEKRAEFDKAMTEYKKRTESGIHQESEEDWEID 161

[Close]

BLAST of Csor.00g148760 vs. ExPASy TrEMBL
Match: A0A0A0KKL8 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522770 PE=4 SV=1)

HSP 1 Score: 240 bits (612), Expect = 1.04e-78
Identity = 135/165 (81.82%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MAKAKKPQKSPSTAAHDSSEAFEEASQEATGLCVKRSEEMKRSAKGRRFNNTEKSTKTNK 60
           MAKAK PQKS S +A DSSE    AS E TGL VKRSE MK +AK  RFN T+K  KT K
Sbjct: 1   MAKAKNPQKSSSASARDSSE----ASSENTGLRVKRSENMKSAAKASRFN-TDKRAKTIK 60

Query: 61  RPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKSMRDVGKACGEKWKTM 120
           +P S QKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVK+MRDVGKACGEKWKTM
Sbjct: 61  KPNSKQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTM 120

Query: 121 TYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEID 165
           TYEEKVQYYDIATEKRAEFDKAM EYKKR ESG+DQESEEDW ID
Sbjct: 121 TYEEKVQYYDIATEKRAEFDKAMTEYKKRMESGIDQESEEDWAID 160

[Close]

BLAST of Csor.00g148760 vs. ExPASy TrEMBL
Match: A0A6J1CXW3 (high mobility group B protein 14 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015820 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 3.16e-70
Identity = 112/126 (88.89%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 40  MKRSAKGRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQ 99
           MKRSA+  RFN ++K  KTNK PKS +KKKNDKFD NKPKKPPTAFFYFLDDFRKEFQEQ
Sbjct: 1   MKRSARASRFN-SDKRAKTNKEPKSKEKKKNDKFDANKPKKPPTAFFYFLDDFRKEFQEQ 60

Query: 100 NPDVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESE 159
           NPDVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESG+D+ESE
Sbjct: 61  NPDVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGIDEESE 120

Query: 160 EDWEID 165
           EDWEID
Sbjct: 121 EDWEID 125

[Close]

BLAST of Csor.00g148760 vs. TAIR 10
Match: AT2G34450.1 (HMG-box (high mobility group) DNA-binding family protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-34
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 0


Query: 32  LCVKRSEEMKRSAKGRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91
           L VK SE  +RS + R         +  ++PK++ KKK  K     PKKP TAFF+FLDD
Sbjct: 25  LAVKSSEGARRSTRLR--------LQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDD 84

Query: 92  FRKEFQEQNPDVKSMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKE 151
           FRK++QE+NPDVKSMR++GK CGEKWKTMTYEEKV+YYDIATEKR EF +AM EY KR E
Sbjct: 85  FRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKRME 144

Query: 152 SGVDQESEEDWEIDE 167
           SG   ESE D +  E
Sbjct: 145 SGAHDESETDSDYSE 151

[Close]

BLAST of Csor.00g148760 vs. TAIR 10
Match: AT2G34450.2 (HMG-box (high mobility group) DNA-binding family protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.4e-33
Identity = 81/136 (59.56%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 32  LCVKRSEEMKRSAKGRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDD 91
           L VK SE  +RS + R         +  ++PK++ KKK  K     PKKP TAFF+FLDD
Sbjct: 25  LAVKSSEGARRSTRLR--------LQPLRKPKTSPKKKPVKLQTKMPKKPATAFFFFLDD 84

Query: 92  FRKEFQEQNPDVKSMRDV-GKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRK 151
           FRK++QE+NPDVKSMR+V GK CGEKWKTMTYEEKV+YYDIATEKR EF +AM EY KR 
Sbjct: 85  FRKQYQEENPDVKSMREVIGKTCGEKWKTMTYEEKVKYYDIATEKREEFHRAMTEYTKRM 144

Query: 152 ESGVDQESEEDWEIDE 167
           ESG   ESE D +  E
Sbjct: 145 ESGAHDESETDSDYSE 152

[Close]

BLAST of Csor.00g148760 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-18
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 46  GRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKS 105
           G+R    EK TK     +  +K+K  K D NKPK+ P+AFF FL+DFR  F+++NP+VK+
Sbjct: 26  GKRKAPAEKPTK-----RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKA 85

Query: 106 MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEID 165
           +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K  E G D+  +   EI+
Sbjct: 86  VSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIN 141

Query: 166 E 167
           +
Sbjct: 146 D 141

[Close]

BLAST of Csor.00g148760 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-18
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 46  GRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKS 105
           G+R    EK TK     +  +K+K  K D NKPK+ P+AFF FL+DFR  F+++NP+VK+
Sbjct: 26  GKRKAPAEKPTK-----RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKA 85

Query: 106 MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEID 165
           +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K  E G D+  +   EI+
Sbjct: 86  VSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIN 141

Query: 166 E 167
           +
Sbjct: 146 D 141

[Close]

BLAST of Csor.00g148760 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-18
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0


Query: 46  GRRFNNTEKSTKTNKRPKSNQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKS 105
           G+R    EK TK     +  +K+K  K D NKPK+ P+AFF FL+DFR  F+++NP+VK+
Sbjct: 26  GKRKAPAEKPTK-----RETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKA 85

Query: 106 MRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMAEYKKRKESGVDQESEEDWEID 165
           +  VGKA G+KWK+M+  EK  Y + A +++AE++K M  Y K  E G D+  +   EI+
Sbjct: 86  VSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIN 141

Query: 166 E 167
           +
Sbjct: 146 D 141

The following BLAST results are available for this feature:

BLAST of Csor.00g148760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64702	3.3e-33	59.26	High mobility group B protein 14 OS=Arabidopsis thaliana OX=3702 GN=HMGB14 PE=2 ...	[more]
O49595	1.2e-16	42.98	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40620	1.8e-15	41.51	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
Q42344	3.4e-14	42.02	High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV...	[more]
O49596	1.3e-13	36.80	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of Csor.00g148760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581419.1	8.08e-107	100.00	High mobility group B protein 14, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022926030.1	6.65e-106	99.40	high mobility group B protein 14 [Cucurbita moschata] >XP_022926031.1 high mobil...	[more]
XP_022978337.1	9.06e-104	97.59	high mobility group B protein 14 [Cucurbita maxima]	[more]
XP_023544425.1	2.60e-103	97.59	high mobility group B protein 14 [Cucurbita pepo subsp. pepo]	[more]
XP_038881049.1	5.17e-94	89.76	high mobility group B protein 14 isoform X1 [Benincasa hispida]	[more]

BLAST of Csor.00g148760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJV4	3.22e-106	99.40	high mobility group B protein 14 OS=Cucurbita moschata OX=3662 GN=LOC111433268 P...	[more]
A0A6J1IKU3	4.39e-104	97.59	high mobility group B protein 14 OS=Cucurbita maxima OX=3661 GN=LOC111478363 PE=...	[more]
A0A1S3AZW3	1.13e-80	81.82	high mobility group B protein 14 OS=Cucumis melo OX=3656 GN=LOC103484380 PE=4 SV...	[more]
A0A0A0KKL8	1.04e-78	81.82	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522770 PE=...	[more]
A0A6J1CXW3	3.16e-70	88.89	high mobility group B protein 14 isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Csor.00g148760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34450.1	2.3e-34	59.26	HMG-box (high mobility group) DNA-binding family protein	[more]
AT2G34450.2	4.4e-33	59.56	HMG-box (high mobility group) DNA-binding family protein	[more]
AT3G51880.1	8.9e-18	42.98	high mobility group B1	[more]
AT3G51880.2	8.9e-18	42.98	high mobility group B1	[more]
AT3G51880.3	8.9e-18	42.98	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 77..148 e-value: 3.1E-20 score: 83.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 78..147 e-value: 1.0E-18 score: 67.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 78..147 score: 17.772511
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 72..161 e-value: 6.8E-23 score: 82.8
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 63..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..166
None	No IPR available	PANTHER	PTHR47658	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 2..165
None	No IPR available	PANTHER	PTHR47658:SF4	HIGH MOBILITY GROUP B PROTEIN 14	coord: 2..165
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 78..144 e-value: 6.06573E-14 score: 61.1045

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g148760.m01	Csor.00g148760.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding