Csor.00g148010 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g148010
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 5961082 .. 5962443 (-)
RNA-Seq ExpressionCsor.00g148010
SyntenyCsor.00g148010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTATCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAGTAAAGATTATTTTATCCGCAAATTCCATCGAGTTTGCTCCTAATCAATCGTGCCGCCCAATTGTTTCTAATTGCACAATTCACTCAACACTAATCAATTTGCTTTATCCGCACCTGAATTGACTACTCAATTTGTTATTCCCATTCCATTTCTTTTGGATTTTCTTCTTTTTCTAATCTCCGTGGAGCAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTTATTTTGTTTCCCTATTTTTGGTTTGGGGACGCGATGGGGGGTACATACTTTTTATTTTCTTTTTTGGATGGTTCTTTATAGATTACGAGCAGTTATTGATTTAACGTATGGGCCTTCATCGGTGTTGTTATGATTATTGCTCTTTTAATTCTGAAGAAACATAATTGATTGTGTTCTTCTTGTTGCTGCTAGTTGTTTCCTGTTGCGCTTGGACGTTTTTATGTAATATGTATTTGCCGAAGCAGTATATGGTCAATCATGGCAGCTTGTGATCAAGACTCGAGAGAATTTGAATTTGAGGGATCTAATTTTATAAGAAAATTTCATGAACATGCATCATAGAGCTATCTGGTTTGTAAGGATATAAATTTTGGGAACAGGTAGGATTATCAGCGTCAAGAAATTTATAAACTTAATCCGCATCCCTGCAATCCTTTGCGCGGAACTTTCTTTTATAGGTTGGCGAGTGCGGGAAGAATAATTTGGTGAACCTAAGTAAATTACCAGAATATAGTGATCATTTGGGGTTCTTGCGCCTTCTACTGTCATAGGGATGGCTTCAGAATTCTCAATCTATTTCGTATCATGAGACATTTGTTTTCTTTTGTATTGCACAGTTTCATCATTGGCAGATTTTTCTCTATTTTTGGTGTTTTATCCTTGTTCTTCATCAACATGAAATGATCCAATTATATCATGAAACAATAACCATTATTGTATTTCTCTATATAAGCAGGTGGAAAATAATAATGCCTGA

mRNA sequence

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTATCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Coding sequence (CDS)

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTATCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Protein sequence

MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDCIVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTKETEREETPRVKAPIINSALLVVFFPEVENNNA
Homology
[Close]
BLAST of Csor.00g148010 vs. NCBI nr
Match: KAG6581494.1 (hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (652), Expect = 1.05e-85
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTKETEREETPRVKAPIINSALLVVFFPE 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTKETEREETPRVKAPIINSALLVVFFPE
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTKETEREETPRVKAPIINSALLVVFFPE 120

Query: 121 VENNNA 126
           VENNNA
Sbjct: 121 VENNNA 126

[Close]
BLAST of Csor.00g148010 vs. NCBI nr
Match: KAG7034782.1 (hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (615), Expect = 8.46e-80
Identity = 124/144 (86.11%), Postives = 125/144 (86.81%), Query Frame = 0 

Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLV FDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST------------------KETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST                  +ETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 126
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 144

The following BLAST results are available for this feature:
BLAST of Csor.00g148010 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g148010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581494.11.05e-85100.00hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034782.18.46e-8086.11hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g148010 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g148010 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g148010.m01Csor.00g148010.m01mRNA