Csor.00g147870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g147870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-H2 finger protein ATL74-like
Location	Csor_Chr14: 6053494 .. 6054096 (+)
RNA-Seq Expression	Csor.00g147870
Synteny	Csor.00g147870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAAAGCGAGGGGGCAATGAGACTGCCTTTTCTGTTTTCAGCGCACAAACAAAAGAAAAAACAGCCACTACTTCAAATCACATTCTCACCCTCCATCTTCAACTCTTATGTTTCTTCATCTCAACTTGTTCCATACCTGTGTTTATGCTGCTTCCTTCTCGGCCATTTCAGCTTGCAAAAATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCTCTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGCGCCGTTGTTTGCACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTCGGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACATCACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA

mRNA sequence

ATGAAAGAAAAGCGAGGGGGCAATGAGACTGCCTTTTCTGTTTTCAGCGCACAAACAAAAGAAAAAACAGCCACTACTTCAAATCACATTCTCACCCTCCATCTTCAACTCTTATGTTTCTTCATCTCAACTTGTTCCATACCTGTGTTTATGCTGCTTCCTTCTCGGCCATTTCAGCTTGCAAAAATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCTCTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGCGCCGTTGTTTGCACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTCGGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACATCACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA

Coding sequence (CDS)

ATGAAAGAAAAGCGAGGGGGCAATGAGACTGCCTTTTCTGTTTTCAGCGCACAAACAAAAGAAAAAACAGCCACTACTTCAAATCACATTCTCACCCTCCATCTTCAACTCTTATGTTTCTTCATCTCAACTTGTTCCATACCTGTGTTTATGCTGCTTCCTTCTCGGCCATTTCAGCTTGCAAAAATGCTCGGTTCTTCGTACACCGAGCCTTCCTCCTCTCCGACTCCTTCCTTTAATCCCTTGCCGAGCTTATCTTTCGCGTACCCTCACGAGCAAGAACAAGGCAGCAACTTCAACCTCCTTGTCACTGTGGCTGCAATTGTTTGCGCCGTTGTTTGCACACTTGGTTTAAATACCATGCTGACATGCATACTTCAATGCGCCAATCACACCCTCAGACAGACATTCCAATGGGTGGCTTTAAGAGGACTGAACTCGGGCATGAAGAAGCAAGACATGATGTCAACTAAAGCTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGCCCCCCAAGGATTCTGCTACTTCTATACATCACATAGTGTAATGTCAACTAAAGCTGCACAGATCAATAAGCAGTACACTTAA

Protein sequence

MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQASAQAPQGFCYFYTSHSVMSTKAAQINKQYT

Homology

[Close]

BLAST of Csor.00g147870 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.7e-05
Identity = 29/88 (32.95%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 43  STCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLL 102
           +T SI +  + P+  FQ  ++LGSSY+      T   +P P+ S   P+  +   + N++
Sbjct: 3   TTISISISTIKPTEIFQ--EILGSSYSRKLLFHTHDQSPTPAPS---PYVGDNNFDANVV 62

Query: 103 VTVAAIVCAVVCTLGLNTMLTCILQCAN 131
           + ++ ++CA+VC+LGLN+++ C L+C+N
Sbjct: 63  MVLSVLLCALVCSLGLNSIIRCALRCSN 85

[Close]

BLAST of Csor.00g147870 vs. NCBI nr
Match: KAG6581508.1 (hypothetical protein SDJN03_21510, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 389 bits (999), Expect = 3.42e-136
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQL 60
           MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQL
Sbjct: 1   MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQL 60

Query: 61  AKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNT 120
           AKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNT
Sbjct: 61  AKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNT 120

Query: 121 MLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQASAQAPQGFCY 180
           MLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQASAQAPQGFCY
Sbjct: 121 MLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQASAQAPQGFCY 180

Query: 181 FYTSHSVMSTKAAQINKQYT 200
           FYTSHSVMSTKAAQINKQYT
Sbjct: 181 FYTSHSVMSTKAAQINKQYT 200

[Close]

BLAST of Csor.00g147870 vs. NCBI nr
Match: KAG7034799.1 (hypothetical protein SDJN02_04531, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 388 bits (996), Expect = 9.80e-136
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQL 60
           MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQL
Sbjct: 1   MKEKRGGNETAFSVFSAQTKEKTATTSNHILTLHLQLLCFFISTCSIPVFMLLPSRPFQL 60

Query: 61  AKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNT 120
           AKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNT
Sbjct: 61  AKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNT 120

Query: 121 MLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQASAQAPQGFCY 180
           MLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQ+SAQAPQGFCY
Sbjct: 121 MLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMSTKAAVSLFLPHLQSSAQAPQGFCY 180

Query: 181 FYTSHSVMSTKAAQINKQYT 200
           FYTSHSVMSTKAAQINKQYT
Sbjct: 181 FYTSHSVMSTKAAQINKQYT 200

[Close]

BLAST of Csor.00g147870 vs. NCBI nr
Match: XP_022977991.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 194 bits (494), Expect = 1.34e-59
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 51  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVC 110
           MLLPSRPFQLAKMLGSSY EPSSSPTPSFNPLPS+SFAYPH+QEQGSNFNL+V VAAIVC
Sbjct: 1   MLLPSRPFQLAKMLGSSYMEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVC 60

Query: 111 AVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
           AVVCTLGLNTMLTCILQCANHTLRQT QWVALRGLN GMKKQDM++
Sbjct: 61  AVVCTLGLNTMLTCILQCANHTLRQTVQWVALRGLNLGMKKQDMIA 106

[Close]

BLAST of Csor.00g147870 vs. NCBI nr
Match: XP_022146710.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 155 bits (392), Expect = 5.07e-44
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 51  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVC 110
           +LLPSRPFQLA +LGSSY E +SSP  S NP PS+ F  PHE+E G NF+L+V VAAI C
Sbjct: 14  LLLPSRPFQLANLLGSSYMELASSP--SINPSPSIPFPAPHEREHGDNFSLIVIVAAITC 73

Query: 111 AVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
           AVVCT+GLNTMLTCILQCA HTLRQT QWVALRGLNSGMKKQDM++
Sbjct: 74  AVVCTVGLNTMLTCILQCAIHTLRQTVQWVALRGLNSGMKKQDMVA 117

[Close]

BLAST of Csor.00g147870 vs. NCBI nr
Match: XP_031743035.1 (RING-H2 finger protein ATL73 [Cucumis sativus])

HSP 1 Score: 139 bits (350), Expect = 3.36e-38
Identity = 84/153 (54.90%), Postives = 97/153 (63.40%), Query Frame = 0


Query: 63  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTML 122
           ML SS+ EPS  P+PS NP PS+S   PHE   G NFNL+V V AIVCAVVCTLGLNTML
Sbjct: 1   MLASSFMEPS--PSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTML 60

Query: 123 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMM----------------STKAAVSLFLP 182
            CILQCANH+LRQT QWVALRGLNSGMKKQDM+                S+ +A ++ L 
Sbjct: 61  ICILQCANHSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLI 120

Query: 183 HLQASAQAPQGFCYFYTSHSV-MSTKAAQINKQ 198
                 +A       Y SH V MS+K  Q+ KQ
Sbjct: 121 DFSNGDKASAQVQGLYRSHCVIMSSKIEQVKKQ 151

[Close]

BLAST of Csor.00g147870 vs. ExPASy TrEMBL
Match: A0A6J1ILJ0 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 6.47e-60
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 51  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVC 110
           MLLPSRPFQLAKMLGSSY EPSSSPTPSFNPLPS+SFAYPH+QEQGSNFNL+V VAAIVC
Sbjct: 1   MLLPSRPFQLAKMLGSSYMEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVC 60

Query: 111 AVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
           AVVCTLGLNTMLTCILQCANHTLRQT QWVALRGLN GMKKQDM++
Sbjct: 61  AVVCTLGLNTMLTCILQCANHTLRQTVQWVALRGLNLGMKKQDMIA 106

[Close]

BLAST of Csor.00g147870 vs. ExPASy TrEMBL
Match: A0A6J1CY10 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111015846 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 2.45e-44
Identity = 80/106 (75.47%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 51  MLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVC 110
           +LLPSRPFQLA +LGSSY E +SSP  S NP PS+ F  PHE+E G NF+L+V VAAI C
Sbjct: 14  LLLPSRPFQLANLLGSSYMELASSP--SINPSPSIPFPAPHEREHGDNFSLIVIVAAITC 73

Query: 111 AVVCTLGLNTMLTCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
           AVVCT+GLNTMLTCILQCA HTLRQT QWVALRGLNSGMKKQDM++
Sbjct: 74  AVVCTVGLNTMLTCILQCAIHTLRQTVQWVALRGLNSGMKKQDMVA 117

[Close]

BLAST of Csor.00g147870 vs. ExPASy TrEMBL
Match: A0A0A0KJ24 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 6.14e-37
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 63  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTML 122
           ML SS+ EPS  P+PS NP PS+S   PHE   G NFNL+V V AIVCAVVCTLGLNTML
Sbjct: 1   MLASSFMEPS--PSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTML 60

Query: 123 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
            CILQCANH+LRQT QWVALRGLNSGMKKQDM++
Sbjct: 61  ICILQCANHSLRQTVQWVALRGLNSGMKKQDMVA 92

[Close]

BLAST of Csor.00g147870 vs. ExPASy TrEMBL
Match: A0A1S3AYW1 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 7.39e-36
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 63  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTML 122
           ML SS+ EPSSSP  S NP PS+S   P E E G NFNL+V V AIVCAVVCTLGLNTML
Sbjct: 1   MLTSSFMEPSSSP--SLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTML 60

Query: 123 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
            CILQCANH+LRQT QWVALRGLNSGMKKQD+++
Sbjct: 61  ICILQCANHSLRQTVQWVALRGLNSGMKKQDVVA 92

[Close]

BLAST of Csor.00g147870 vs. ExPASy TrEMBL
Match: A0A5A7UAN6 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010060 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 2.79e-35
Identity = 69/94 (73.40%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 63  MLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLLVTVAAIVCAVVCTLGLNTML 122
           ML SS+ EPSSSP  S NP PS+S   P E E G NFNL+V V AIVCAVVCTLGLNTML
Sbjct: 1   MLTSSFMEPSSSP--SLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTML 60

Query: 123 TCILQCANHTLRQTFQWVALRGLNSGMKKQDMMS 156
            CILQCANH+ RQT QWVALRGLNSGMKKQD+++
Sbjct: 61  ICILQCANHSFRQTVQWVALRGLNSGMKKQDVVA 92

[Close]

BLAST of Csor.00g147870 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 5.5e-06
Identity = 29/88 (32.95%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 43  STCSIPVFMLLPSRPFQLAKMLGSSYTEPSSSPTPSFNPLPSLSFAYPHEQEQGSNFNLL 102
           +T SI +  + P+  FQ  ++LGSSY+      T   +P P+ S   P+  +   + N++
Sbjct: 3   TTISISISTIKPTEIFQ--EILGSSYSRKLLFHTHDQSPTPAPS---PYVGDNNFDANVV 62

Query: 103 VTVAAIVCAVVCTLGLNTMLTCILQCAN 131
           + ++ ++CA+VC+LGLN+++ C L+C+N
Sbjct: 63  MVLSVLLCALVCSLGLNSIIRCALRCSN 85

The following BLAST results are available for this feature:

BLAST of Csor.00g147870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	7.7e-05	32.95	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]

BLAST of Csor.00g147870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581508.1	3.42e-136	100.00	hypothetical protein SDJN03_21510, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7034799.1	9.80e-136	99.50	hypothetical protein SDJN02_04531, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022977991.1	1.34e-59	91.51	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_022146710.1	5.07e-44	75.47	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]
XP_031743035.1	3.36e-38	54.90	RING-H2 finger protein ATL73 [Cucumis sativus]	[more]

BLAST of Csor.00g147870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILJ0	6.47e-60	91.51	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE...	[more]
A0A6J1CY10	2.45e-44	75.47	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111015846...	[more]
A0A0A0KJ24	6.14e-37	74.47	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 P...	[more]
A0A1S3AYW1	7.39e-36	74.47	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 S...	[more]
A0A5A7UAN6	2.79e-35	73.40	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Csor.00g147870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	5.5e-06	32.95	RING/U-box superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g147870.m01	Csor.00g147870.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane