Csor.00g147490 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g147490
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 568270 .. 568737 (+)
RNA-Seq Expression	Csor.00g147490
Synteny	Csor.00g147490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAAACACGACACGGCGACAGGAAGTTGATGGCTGGTCGTCTTGGGTCTTGGCGAACAGTGAAGAATCCCCGGAGGGTGGCTGCAATCATGGGGCGCGGACCATAAATGGGCTTCAATTAAATGGGTCGGTTCTGGGTTCATTATGAAAAACCCATAAAAATAGAAATAAAAAAGTAATTCCATCCCGCCCTCTTTTTCTCCTCCTTCTCTCGCCTCACGTATACAGCCGCCAGTCCTCGTCCTTCATCTTCGGCGATCCTCCAGCGACAGACCCACGCTACTCTCTGGCGCCAACAGTGAACAGCGCAACTCCGACCAGAAACCGCCGCCTCACCTACACGATCGAGACAGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGCGCAACATTCTCCAGCACCGGCAGCACGAGCTACTCCACATTTGGAATTCTTCTGAGGACTAA

mRNA sequence

ATGGATTCAAACACGACACGGCGACAGGAAGTTGATGGCTGGTCGTCTTGGGTCTTGGCGAACAGTGAAGAATCCCCGGAGGGTGGCTGCAATCATGGGGCGCGGACCATAAATGGGCTTCAATTAAATGGCCGCCAGTCCTCGTCCTTCATCTTCGGCGATCCTCCAGCGACAGACCCACGCTACTCTCTGGCGCCAACAGTGAACAGCGCAACTCCGACCAGAAACCGCCGCCTCACCTACACGATCGAGACAGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGCGCAACATTCTCCAGCACCGGCAGCACGAGCTACTCCACATTTGGAATTCTTCTGAGGACTAA

Coding sequence (CDS)

ATGGATTCAAACACGACACGGCGACAGGAAGTTGATGGCTGGTCGTCTTGGGTCTTGGCGAACAGTGAAGAATCCCCGGAGGGTGGCTGCAATCATGGGGCGCGGACCATAAATGGGCTTCAATTAAATGGCCGCCAGTCCTCGTCCTTCATCTTCGGCGATCCTCCAGCGACAGACCCACGCTACTCTCTGGCGCCAACAGTGAACAGCGCAACTCCGACCAGAAACCGCCGCCTCACCTACACGATCGAGACAGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGCGCAACATTCTCCAGCACCGGCAGCACGAGCTACTCCACATTTGGAATTCTTCTGAGGACTAA

Protein sequence

MDSNTTRRQEVDGWSSWVLANSEESPEGGCNHGARTINGLQLNGRQSSSFIFGDPPATDPRYSLAPTVNSATPTRNRRLTYTIETVCSSSPSQTATHCARRRNILQHRQHELLHIWNSSED

Homology

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BLAST of Csor.00g147490 vs. NCBI nr
Match: KAG6570426.1 (hypothetical protein SDJN03_29341, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (640), Expect = 4.91e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MDSNTTRRQEVDGWSSWVLANSEESPEGGCNHGARTINGLQLNGRQSSSFIFGDPPATDP 60
           MDSNTTRRQEVDGWSSWVLANSEESPEGGCNHGARTINGLQLNGRQSSSFIFGDPPATDP
Sbjct: 1   MDSNTTRRQEVDGWSSWVLANSEESPEGGCNHGARTINGLQLNGRQSSSFIFGDPPATDP 60

Query: 61  RYSLAPTVNSATPTRNRRLTYTIETVCSSSPSQTATHCARRRNILQHRQHELLHIWNSSE 120
           RYSLAPTVNSATPTRNRRLTYTIETVCSSSPSQTATHCARRRNILQHRQHELLHIWNSSE
Sbjct: 61  RYSLAPTVNSATPTRNRRLTYTIETVCSSSPSQTATHCARRRNILQHRQHELLHIWNSSE 120

[Close]

BLAST of Csor.00g147490 vs. ExPASy TrEMBL
Match: A0A0A0KI89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G430640 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.25e-07
Identity = 39/72 (54.17%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 59  DPRYSLAPTVNSATPTRNRRLTYTIETVCSSS---------PSQTATHCARRRNILQHRQ 118
           DP Y   P V SATPT +R     + TVC SS         P QT TH ARRRNIL+HR 
Sbjct: 36  DPPYPPPPAVISATPTSDRVSPTLLTTVCCSSTVATSCYSTPLQTETHGARRRNILRHRN 95

Query: 119 HELLHIWNSSED 121
           HEL HI NSS D
Sbjct: 96  HEL-HILNSSVD 106

The following BLAST results are available for this feature:

BLAST of Csor.00g147490 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g147490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570426.1	4.91e-84	100.00	hypothetical protein SDJN03_29341, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g147490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI89	1.25e-07	54.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G430640 PE=4 SV=1	[more]

BLAST of Csor.00g147490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g147490.m01	Csor.00g147490.m01	mRNA