Csor.00g147480 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g147480
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	Csor_Chr20: 566846 .. 567715 (+)
RNA-Seq Expression	Csor.00g147480
Synteny	Csor.00g147480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCGTACGGAGGTAATGCGATAATACGTTCTTCCATTCATTTAGTTCAGATTATCACATCAGTTTCTTTCGATTTCCATCCTTTGTTTTGAAAAAACGAATTCATCGTTGTTTAGATTATGGTTTTCGTTGAATCTTGTTGAATCTTGGCCTTTGTTGTTTCGAAAATTTATTGTCCTAATTCAAGAGAATCGTTGCGTTTCATTCTTGATTCCTGAGCAAAAGATCACCGTAATGGATACAAATCAATCAAGATCGCTAAAAATCGTGAGATGTGGAAGAGAAATATGATGAATCTATTTGAATATGAAACTGAAAGTTTGGTTGGTGTGTGTCTGTGTGTGTGTTTATACAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCTAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCGCCACCGTCACGAACACCGACAGCAACATCACCACCAACGCCACCACCCGCATCATGGTCAATTACCAGTGGATGGCGCTGTTGTCGGGGTAAGCACTTCTAATCGCTGAGTTATGTCCACTTTGATCTGTTCTTTTCCCACTTTTACCTCAAAATCCGATTGACCTAATTTGAACAAGAATTGAATGTAGTTATTAAGAACAGAAGGTGAATGTATATCTCCTAATAGAGTGTTGTTTTTGTTTGTGTAATCCAGCAGAAGAAAAAGAAGATTCTGTCCTGCATGAGTTGTTGTATCAAGCCTTGA

mRNA sequence

ATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCTAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCGCCACCGTCACGAACACCGACAGCAACATCACCACCAACGCCACCACCCGCATCATGGTCAATTACCAGTGGATGGCGCTGTTGTCGGGCAGAAGAAAAAGAAGATTCTGTCCTGCATGAGTTGTTGTATCAAGCCTTGA

Coding sequence (CDS)

ATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCTAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCGCCACCGTCACGAACACCGACAGCAACATCACCACCAACGCCACCACCCGCATCATGGTCAATTACCAGTGGATGGCGCTGTTGTCGGGCAGAAGAAAAAGAAGATTCTGTCCTGCATGAGTTGTTGTATCAAGCCTTGA

Protein sequence

MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP

Homology

[Close]

BLAST of Csor.00g147480 vs. NCBI nr
Match: KAG6570425.1 (hypothetical protein SDJN03_29340, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010301.1 hypothetical protein SDJN02_27094 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (607), Expect = 4.59e-79
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of Csor.00g147480 vs. NCBI nr
Match: XP_023512837.1 (dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (602), Expect = 2.66e-78
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHR QHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRHQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of Csor.00g147480 vs. NCBI nr
Match: XP_022943522.1 (dendritic arbor reduction protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 235 bits (600), Expect = 5.36e-78
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GAVVGQKKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of Csor.00g147480 vs. NCBI nr
Match: XP_023512838.1 (dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229 bits (585), Expect = 1.01e-75
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHR QHHHQRHHPHHGQLPVDGAVVG KKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRHQHHHQRHHPHHGQLPVDGAVVG-KKKKILSCMSCCIKP 118

[Close]

BLAST of Csor.00g147480 vs. NCBI nr
Match: XP_022943523.1 (dendritic arbor reduction protein 1 isoform X2 [Cucurbita moschata])

HSP 1 Score: 229 bits (583), Expect = 2.03e-75
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GAVVG KKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGAVVG-KKKKILSCMSCCIKP 118

[Close]

BLAST of Csor.00g147480 vs. ExPASy TrEMBL
Match: A0A6J1FT95 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 235 bits (600), Expect = 2.60e-78
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GAVVGQKKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of Csor.00g147480 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 229 bits (583), Expect = 9.85e-76
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GAVVG KKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVGGAVVG-KKKKILSCMSCCIKP 118

[Close]

BLAST of Csor.00g147480 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.92e-75
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQH HR EHR QHHH RHHPHHGQLP DGAVVGQKKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHHHRREHRHQHHHHRHHPHHGQLPADGAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of Csor.00g147480 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 221 bits (563), Expect = 1.11e-72
Identity = 113/119 (94.96%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60
           MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL
Sbjct: 1   MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKEL 60

Query: 61  MAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIKP 119
           MAIADKHDRHHQH HR EHR QHHH RHHPHHGQLP DGAVVG KKKKILSCMSCCIKP
Sbjct: 61  MAIADKHDRHHQHHHRREHRHQHHHHRHHPHHGQLPADGAVVG-KKKKILSCMSCCIKP 118

[Close]

BLAST of Csor.00g147480 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 2.50e-40
Identity = 81/133 (60.90%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MDSRTEN-RWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKE 60
           M +R EN RW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKE
Sbjct: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60

Query: 61  LMAIADKHDRHHQHRH-RHEHRQQHHHQR-----------HHPHHGQLPV-DGAVVGQKK 119
           LM   DKH RH +HRH RH HR  HHH             HH HH Q P  D +V  +KK
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPEKK 120

[Close]

BLAST of Csor.00g147480 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-14
Identity = 54/121 (44.63%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 1   MDSRTEN-RWKSVPEFGGWDNNTP-DASNYSVVFSRARANKKQQKTDLTEFKRASLGNEK 60
           MD R EN  W  VP+FGGWD   P DA+NYSVVFS+ARAN+KQ K  +   + +SLG+E+
Sbjct: 1   MDKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQ 60

Query: 61  ELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCMSCCIK 120
           ELM    ++  H Q  HRHE +               PV       KKK+IL+ ++CCI+
Sbjct: 61  ELMVSVRRN--HQQLHHRHETQDDD------------PV------MKKKRILTYINCCIR 98

[Close]

BLAST of Csor.00g147480 vs. TAIR 10
Match: AT5G09960.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 42/125 (33.60%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 2   DSRTENR--WKSVPEFGGWDNNTPDA-SNYSVVFSRARANKKQQKTDLTEFKRASLGNEK 61
           D R E    W SVP+FG WD        +YS+ F++ R  +KQ K D +   RASLGNE+
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPS---RASLGNEE 62

Query: 62  ELM-----AIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKILSCM 119
           EL+     A +       Q  ++ E    HHHQ H P               ++ + SC 
Sbjct: 63  ELIKPPESATSTAELTTVQSENQREFSPSHHHQPHSP-------------STRRSMFSCF 111

The following BLAST results are available for this feature:

BLAST of Csor.00g147480 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g147480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570425.1	4.59e-79	100.00	hypothetical protein SDJN03_29340, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512837.1	2.66e-78	99.16	dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022943522.1	5.36e-78	99.16	dendritic arbor reduction protein 1 isoform X1 [Cucurbita moschata]	[more]
XP_023512838.1	1.01e-75	98.32	dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022943523.1	2.03e-75	98.32	dendritic arbor reduction protein 1 isoform X2 [Cucurbita moschata]	[more]

BLAST of Csor.00g147480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FT95	2.60e-78	99.16	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FX29	9.85e-76	98.32	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JEB9	2.92e-75	95.80	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1JCC4	1.11e-72	94.96	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KK09	2.50e-40	60.90	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G43...	[more]

BLAST of Csor.00g147480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19473.1	5.6e-14	44.63	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G09960.1	1.4e-04	33.60	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 10..40 e-value: 2.3E-7 score: 30.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..97
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 2..118
None	No IPR available	PANTHER	PTHR33882:SF11	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g147480.m01	Csor.00g147480.m01	mRNA