Csor.00g147200 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g147200
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	heterogeneous nuclear ribonucleoprotein F-like
Location	Csor_Chr20: 396587 .. 398766 (+)
RNA-Seq Expression	Csor.00g147200
Synteny	Csor.00g147200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTACCGAGGGTAACCTTCCCCTATCTCTATGCTCTAGTTTTTCTTCATTCTTTGTTTCTTTTCCCCGTTAATTCTCACAATTTGACGTCGATTTGGGGCTCTGGGTCCTCTCCTTTTTTTTCTTTTTTTCTTTTTTTCTCTATCTATCTCCTGTTTGTGCTAGTCTGGTAGGATGATTAGTTGGCATGTTTATATGATTTAGAAGGTTGGGCCATTGAATTGTCATCAATTAGCTATGGGTGTTGGGAACTCTTGAGCTTTAATGTTTATTGCCTAATAATACATGAGAGTGTTTTAGAATGAGAAAATACGCTTAAATTTTTTTACCTGGTGGGAGAGAGATTGGAAATTGAGGGAAGGACAAGAGGACCAAATTAGTTCAACCACCAAAGAAGGCTAAAATGGATCAGTGTGAATCAAAAAGGAAGGATGACTTTAAATACATAAGAAGTGTATTCCATCTAAGGGTATTGACAAAAAATTCAAGTGTTTATGTCGCTCTAAATCTGCCAAAAAGCTGCTAGAAACAGCTGAACCACAATGTTTGCTTCATTCTCAATTTTTGTCCCATGTCTAGTTTAGATATAATGTCAACAATATTAGGAGAAAGAGAGTAACAGCTGAATGAATGTCTTAGGAACGGTTTCTAAATTGTTTGCTAAGAAAAAACCACTTTGATTGGCTTTTTAAAATTGACTTAACGTTGGAGGAGGCCTTTGACATGGTTGATCGCAATTTATTGGATATGGTCTTGGAGAAAAAGGGCTTTGGCCAGAAGGAAGCAAGTGAATATTCAATTGTATTGACACTTCCACTTTTTTTATTTTCGCAATGGAAAACCTCATAGTACAATTGAAGCCTCAAGAGGACAAGTTTATCATATGCCCTACCCTACCTTGGTCTCCCGATTCTCCCCACAAGATCCCTTAATACTGCTGTGAAAATCAAATATAGAGACAGCTGACTGTCGGGATTGAAGATCCAATGGCCTGGAACCTTGTCTATTGTTCTCCTGGATGAGGAGGTCCTAAACTTTTTAGATATTTCCACATGTGAAACTCCAAATTAAACACATTTAAAAAGTTGCAGGCAAGATTTGTATTCCCTTTCCGTATTAGCAGTTGAGTTAGAAATTGAAGCATCTGGCTTTGTTTTTTCTTGTATATATCTTCTATGTGGTCTGAAAATAGTGAACCTTCCCCACGTTTTTATGTATATGGGAAACTTGAAATTGCAGATCTATATTTTTATAGCCAAGAAAGAAGTAGATGCGCATAGGAACCATGTCCTCATTTTTAGCATAGAGAAATATTTTTCTTAGATATTCGAAACATTGATTTTTTGATCTCTTAGGATGGTGTATTGACAAGGTTTCGGTTTTTGTGAATTTCATGTTTCTGTTTGGACTGAAGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGAGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

mRNA sequence

ATGTTCTACCGAGGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGAGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Coding sequence (CDS)

ATGTTCTACCGAGGTCCATATGCTGATGGTGGTGATGGTCGAGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAAGGATCTTCTTATTATGAGACCCCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATGTGTTAGTCAGCCCCCACCATTTCCTGTTGTCAGACTACGGGGTCTCCCTTTTGATTGCATGGAAACTGATGTCGTCGAGTTCTTTCATGGTCTGGACGTAGTTGACATTCTTTTTGTCCACAAGAATGGAAAATTCACAGGGGAAGGCTTTTGTGTTTTGGGTTATCCTCTGCAGGTTGATTTTGCCCTTCAAAGGAACAGGCAAAACATGGGGCGGAGATACGTCGAGGTATTCAGGAGTAATCGACAAGAATACTACAAGGCCGTAGCAAATGAAGTTTTCGATGCATCGGGTGGGTCACCAAGAAGAACTGCACCCAGGTCAAAGTTAACCGACGAGGTAAAAGACTCCGCCGAACACACCGGTGTATTACGCTTGAGGGGTTTGCCATATTCGGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTATCTTATCAGAAGACTCCATTCATTTAACACTGAATTCAGAGGGGAGACCAAGTGGGGAAGCATTTGTGGAATTCTCAAATGAGCATGACTCGAAGGCAGCCATGTCCAAGGATAGAATGACCTTAGGTAGCCGTTACATAGAGTTGTTCCCATCCTCTCATGAAGAATTGGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR

Homology

[Close]

BLAST of Csor.00g147200 vs. ExPASy Swiss-Prot
Match: Q8R4X3 (RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-26
Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 0


Query: 58  VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNR 117
           V + G+PF  ME DV EFFHGL  D V +L  H  G+  G G      P     AL+RNR
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR 365

Query: 118 QNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPRSKLTDEVKDSAEHT 177
             M +RYVEV  +  +++  A  +  F  S G       P +T PRSK     K S   +
Sbjct: 366 MLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 425

Query: 178 G-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDS 237
                  + L+GLP+ A    ++DFFK   + EDSI++     G+ +GE FVEF N+ D 
Sbjct: 426 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 485

Query: 238 KAAMSKDRMTLGSRYIELFPSSHEELDEAI 255
           KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 486 KAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]

BLAST of Csor.00g147200 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 71/199 (35.68%), Postives = 114/199 (57.29%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVVEFFHGLDVVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     + D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 117 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 176
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 177 LRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKD 236
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+F+++  ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 237 RMTLGSRYIELFPSSHEEL 251
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Csor.00g147200 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 71/199 (35.68%), Postives = 114/199 (57.29%), Query Frame = 0


Query: 57  VVRLRGLPFDCMETDVVEFFHGLDVVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 116
           VV+LRGLP+ C   DV  F     + D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 117 QRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGV 176
           +++R++MG RY+EVF+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 177 LRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKD 236
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+F+++  ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 237 RMTLGSRYIELFPSSHEEL 251
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

[Close]

BLAST of Csor.00g147200 vs. ExPASy Swiss-Prot
Match: Q9NTZ6 (RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 78/224 (34.82%), Postives = 115/224 (51.34%), Query Frame = 0


Query: 50  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVL 109
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 110 GYPLQVDFALQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPR 169
             P     AL+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPR 411

Query: 170 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRP 229
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 230 SGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 255
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]

BLAST of Csor.00g147200 vs. ExPASy Swiss-Prot
Match: Q8SQ27 (RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 78/224 (34.82%), Postives = 115/224 (51.34%), Query Frame = 0


Query: 50  SQPPPFPV------VRLRGLPFDCMETDVVEFFHGL--DVVDILFVHKNGKFTGEGFCVL 109
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 110 GYPLQVDFALQRNRQNMGRRYVEVFRSNRQEYYKAVANEVFDASGG------SPRRTAPR 169
             P     AL+RNR  M +RYVEV  +  +++  A  +  F  + G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPR 411

Query: 170 SKLTDEVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRP 229
           SK     K S   +       + L+GLP+ A    ++DFFK   + EDSI++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 230 SGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 255
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]

BLAST of Csor.00g147200 vs. NCBI nr
Match: KAG6570397.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 530 bits (1365), Expect = 4.65e-190
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of Csor.00g147200 vs. NCBI nr
Match: XP_022944575.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata])

HSP 1 Score: 526 bits (1354), Expect = 2.21e-188
Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRGPYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVEVFRSNRQEYYKAVANEVF+ASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFEASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of Csor.00g147200 vs. NCBI nr
Match: XP_023511865.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP_023511866.1 heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 523 bits (1348), Expect = 1.82e-187
Identity = 255/258 (98.84%), Postives = 256/258 (99.22%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRGPYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEA+SRGR
Sbjct: 241 ELFPSSHEELDEALSRGR 258

[Close]

BLAST of Csor.00g147200 vs. NCBI nr
Match: XP_022986707.1 (heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima])

HSP 1 Score: 518 bits (1335), Expect = 1.74e-185
Identity = 252/258 (97.67%), Postives = 254/258 (98.45%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRGPYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLDVVD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFK FILSEDSIHLT NSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of Csor.00g147200 vs. NCBI nr
Match: KAG7010271.1 (Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 516 bits (1329), Expect = 1.33e-184
Identity = 252/255 (98.82%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 4   RGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 63
           R PYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRLRGL
Sbjct: 2   RSPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRLRGL 61

Query: 64  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYV 123
           PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDF+LQRNRQNMGRRYV
Sbjct: 62  PFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFSLQRNRQNMGRRYV 121

Query: 124 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 183
           EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK
Sbjct: 122 EVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGK 181

Query: 184 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 243
           DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF
Sbjct: 182 DDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELF 241

Query: 244 PSSHEELDEAISRGR 258
           PSSHEELDEAISRGR
Sbjct: 242 PSSHEELDEAISRGR 256

[Close]

BLAST of Csor.00g147200 vs. ExPASy TrEMBL
Match: A0A6J1FYR3 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111448988 PE=4 SV=1)

HSP 1 Score: 526 bits (1354), Expect = 1.07e-188
Identity = 256/258 (99.22%), Postives = 257/258 (99.61%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRGPYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVEVFRSNRQEYYKAVANEVF+ASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFEASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of Csor.00g147200 vs. ExPASy TrEMBL
Match: A0A6J1J8B6 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111484376 PE=4 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 8.44e-186
Identity = 252/258 (97.67%), Postives = 254/258 (98.45%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRGPYADGGDGREMGAKRQRIVDQGSSYY TPPGSGFMYNTSPYACVSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLDVVD+LFVHKNGKFTGEGFCVLGYPLQ+DFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDVLFVHKNGKFTGEGFCVLGYPLQIDFALQRNRQNMGR 120

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFK FILSEDSIHLT NSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDSIHLTQNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 241 ELFPSSHEELDEAISRGR 258

[Close]

BLAST of Csor.00g147200 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 6.59e-179
Identity = 245/258 (94.96%), Postives = 249/258 (96.51%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRG YADGGDGREMGAKRQRIVDQGSSYY T PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYI
Sbjct: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 243 ELFPSSHEELDEAISRGR 260

[Close]

BLAST of Csor.00g147200 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 6.59e-179
Identity = 245/258 (94.96%), Postives = 249/258 (96.51%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRL 60
           MFYRG YADGGDGREMGAKRQRIVDQGSSYY T PGSGFMYNTSPYA V+QPPPFPVVRL
Sbjct: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRL 62

Query: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120
           RGLPFDCMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 63  RGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122

Query: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYS
Sbjct: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYS 182

Query: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYI 240
           AGKDDILDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYI
Sbjct: 183 AGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 242

Query: 241 ELFPSSHEELDEAISRGR 258
           ELFPSSHEELDEAISRGR
Sbjct: 243 ELFPSSHEELDEAISRGR 260

[Close]

BLAST of Csor.00g147200 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 490 bits (1261), Expect = 1.07e-173
Identity = 240/252 (95.24%), Postives = 244/252 (96.83%), Query Frame = 0


Query: 7   YADGGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFD 66
           YADGGDGREMGAKRQRIVDQGSSYY T PGSGFMYNTSPYA V+QPPPFPVVRLRGLPFD
Sbjct: 59  YADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPFD 118

Query: 67  CMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVF 126
           CMETDVVEFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVE+F
Sbjct: 119 CMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIF 178

Query: 127 RSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDI 186
           RSNRQEYYKAVANEVFDA GGSPRR+APRSKL DEVKDSAEHTGVLRLRGLPYSAGKDDI
Sbjct: 179 RSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDDI 238

Query: 187 LDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSS 246
           LDFFK F LSEDSIHLTLNSEGRPSGEAFVEFSNE DSKAAMSKDRMTLGSRYIELFPSS
Sbjct: 239 LDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPSS 298

Query: 247 HEELDEAISRGR 258
           HEELDEAISRGR
Sbjct: 299 HEELDEAISRGR 310

[Close]

BLAST of Csor.00g147200 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 371.3 bits (952), Expect = 6.2e-103
Identity = 191/293 (65.19%), Postives = 216/293 (73.72%), Query Frame = 0


Query: 1   MFYRGPYADGGDGREMGAKRQRIVDQG--SSYYETPPGSGFMYNTSPYACVSQPPPFPVV 60
           MFYRG Y DG DGREMG KRQR++DQG    +Y   P SGFMYN   +     PPPFP V
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAV 60

Query: 61  RLRGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDC E DVVEFFHGLDVVD+LFVH+N K TGE FCVLGYPLQVDFALQ+NRQNM
Sbjct: 61  RLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNM 120

Query: 121 GRRYVEVFRSNRQEYYKAVANEVFD------ASGG------------------------- 180
           GRRYVEVFRS +QEYYKA+ANEV +      ASGG                         
Sbjct: 121 GRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISG 180

Query: 181 --SPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLN 240
             SPRR   R++ +D+ K+  EHTG+LRLRGLP+SAGK+DILDFFKDF LSED +H+T+N
Sbjct: 181 GSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVN 240

Query: 241 SEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 259
            EGRP+GEAFVEF N  DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 GEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]

BLAST of Csor.00g147200 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-56
Identity = 113/253 (44.66%), Postives = 161/253 (63.64%), Query Frame = 0


Query: 10  GGDGREMGAKRQRIVDQGSSYYETPPGSGFMYNTSPYACVSQPPPFPVVRLRGLPFDCME 69
           G  G E+G+KRQR++ Q + Y     G       + +        FPVVRLRGLPF+C +
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTG------PTSFPPFGYAGGFPVVRLRGLPFNCAD 69

Query: 70  TDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSN 129
            D+ EFF GL++VD+L V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVEVFR +
Sbjct: 70  IDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFRCS 129

Query: 130 RQEYYKAVANE----VFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYSAGKDD 189
           +Q+YY AVA E     ++     P     R+K   E K+  E+T VL++RGLPYS  K  
Sbjct: 130 KQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNKPQ 189

Query: 190 ILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEHDSKAAMSKDRMTLGSRYIELFPS 249
           I++FF  + + +  + +    +G+ +GEAFVEF    +++ AM+KD+M++GSRY+ELFP+
Sbjct: 190 IIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFPT 249

Query: 250 SHEELDEAISRGR 259
           + EE   A +R R
Sbjct: 250 TREEARRAEARSR 254

[Close]

BLAST of Csor.00g147200 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.8 bits (351), Expect = 3.1e-33
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 105 LQVDFALQRNRQNMGRRYVEVFRSNRQEYYKAVANE----VFDASGGSPRRTAPRSKLTD 164
           +QV+ ALQR+R NMGRRYVEVFR ++Q+YY AVA E     ++     P     R+K   
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60

Query: 165 EVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSN 224
           E K+  E+T VL++RGLPYS  K  I++FF  + + +  + +    +G+ +GEAFVEF  
Sbjct: 61  E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 225 EHDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 259
             +++ AM+KD+M++GSRY+ELFP++ EE   A +R R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]

BLAST of Csor.00g147200 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 42.7 bits (99), Expect = 5.1e-04
Identity = 28/94 (29.79%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 162 VKDSAEHTGVLRLRGLPYSAGKDDILDFFKDF-ILSEDSIHLTLNSEGRPS-GEAFVEFS 221
           V D    TG L +R LPY+A ++++++ F  F  +SE  +HL L+ E + S G A++ + 
Sbjct: 286 VSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISE--VHLVLDKETKRSRGIAYILYL 345

Query: 222 NEHDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 253
               +  AM + D  +   R + + P+ H E  +
Sbjct: 346 IPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

The following BLAST results are available for this feature:

BLAST of Csor.00g147200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R4X3	4.6e-26	36.19	RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3	[more]
P52597	1.7e-25	35.68	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1...	[more]
Q60HC3	1.7e-25	35.68	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN...	[more]
Q9NTZ6	1.7e-25	34.82	RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1	[more]
Q8SQ27	1.7e-25	34.82	RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1	[more]

BLAST of Csor.00g147200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570397.1	4.65e-190	100.00	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]
XP_022944575.1	2.21e-188	99.22	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita moschata]	[more]
XP_023511865.1	1.82e-187	98.84	heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022986707.1	1.74e-185	97.67	heterogeneous nuclear ribonucleoprotein F-like [Cucurbita maxima]	[more]
KAG7010271.1	1.33e-184	98.82	Heterogeneous nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Csor.00g147200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYR3	1.07e-188	99.22	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J8B6	8.44e-186	97.67	heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L205	6.59e-179	94.96	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV...	[more]
A0A1S3BMM3	6.59e-179	94.96	heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150...	[more]
A0A5A7TH86	1.07e-173	95.24	Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa...	[more]

BLAST of Csor.00g147200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20890.1	6.2e-103	65.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.1	4.4e-56	44.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G66010.2	3.1e-33	44.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	5.1e-04	29.79	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..126 e-value: 0.084 score: 16.2 coord: 171..243 e-value: 6.8E-7 score: 38.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 173..240 e-value: 1.9E-8 score: 34.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 170..258 score: 10.240801
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 46..145 e-value: 2.9E-20 score: 74.1 coord: 153..257 e-value: 1.6E-29 score: 104.0
None	No IPR available	PANTHER	PTHR13976:SF76	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..258
None	No IPR available	PANTHER	PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	coord: 1..258
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 57..126 e-value: 9.67545E-22 score: 84.1459
None	No IPR available	CDD	cd12254	RRM_hnRNPH_ESRPs_RBM12_like	coord: 171..243 e-value: 8.6702E-30 score: 104.947
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 49..135
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 164..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g147200.m01	Csor.00g147200.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding