Csor.00g147120 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g147120
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionouter envelope protein 80, chloroplastic
LocationCsor_Chr20: 364910 .. 365311 (-)
RNA-Seq ExpressionCsor.00g147120
SyntenyCsor.00g147120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTGTGTTTTACTTCCCCTGCTACGCTTAAGACTTCCATGCTTTCCTCCGTCTACCTCGCATTCCAGTTTCATTCAATATTCCTGTTCATTGTGTTTTACTTCTTTTGTGGTTCAAAGAAGGTAACTCCGCAAGGGAATTCGGTTACAACTGAGACTTGGGGGGCAATGTTTGTTGATAAATCTCCCCTAATTTGTTCGGCCTCATTGTCGCTAATTCAATCCGACTTGTCGAATAAGTCTGAGTCTGATATTCGTACGAACCATCGTTTTTTGACTGGTGGGTACATTCAGTGGCCAGCCAATTTCAGGAAACACAAGGCCGGAGACAATACTCCGCCAACTGGACAGGTATTTGGTGCATGCTTGATCTGTCTAACTTCTCGTTATAAAACATGA

mRNA sequence

ATGACATTGTGTTTTACTTCCCCTGCTACGCTTAAGACTTCCATGCTTTCCTCCGTCTACCTCGCATTCCAGTTTCATTCAATATTCCTGTTCATTGTGTTTTACTTCTTTTGTGGTTCAAAGAAGGTAACTCCGCAAGGGAATTCGGTTACAACTGAGACTTGGGGGGCAATGTTTGTTGATAAATCTCCCCTAATTTGTTCGGCCTCATTGTCGCTAATTCAATCCGACTTGTCGAATAAGTCTGAGTCTGATATTCGTACGAACCATCGTTTTTTGACTGGTGGGTACATTCAGTGGCCAGCCAATTTCAGGAAACACAAGGCCGGAGACAATACTCCGCCAACTGGACAGGTATTTGGTGCATGCTTGATCTGTCTAACTTCTCGTTATAAAACATGA

Coding sequence (CDS)

ATGACATTGTGTTTTACTTCCCCTGCTACGCTTAAGACTTCCATGCTTTCCTCCGTCTACCTCGCATTCCAGTTTCATTCAATATTCCTGTTCATTGTGTTTTACTTCTTTTGTGGTTCAAAGAAGGTAACTCCGCAAGGGAATTCGGTTACAACTGAGACTTGGGGGGCAATGTTTGTTGATAAATCTCCCCTAATTTGTTCGGCCTCATTGTCGCTAATTCAATCCGACTTGTCGAATAAGTCTGAGTCTGATATTCGTACGAACCATCGTTTTTTGACTGGTGGGTACATTCAGTGGCCAGCCAATTTCAGGAAACACAAGGCCGGAGACAATACTCCGCCAACTGGACAGGTATTTGGTGCATGCTTGATCTGTCTAACTTCTCGTTATAAAACATGA

Protein sequence

MTLCFTSPATLKTSMLSSVYLAFQFHSIFLFIVFYFFCGSKKVTPQGNSVTTETWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFLTGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTSRYKT
Homology
[Close]
BLAST of Csor.00g147120 vs. NCBI nr
Match: KAG6570389.1 (hypothetical protein SDJN03_29304, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275 bits (702), Expect = 4.19e-93
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 

Query: 1   MTLCFTSPATLKTSMLSSVYLAFQFHSIFLFIVFYFFCGSKKVTPQGNSVTTETWGAMFV 60
           MTLCFTSPATLKTSMLSSVYLAFQFHSIFLFIVFYFFCGSKKVTPQGNSVTTETWGAMFV
Sbjct: 1   MTLCFTSPATLKTSMLSSVYLAFQFHSIFLFIVFYFFCGSKKVTPQGNSVTTETWGAMFV 60

Query: 61  DKSPLICSASLSLIQSDLSNKSESDIRTNHRFLTGGYIQWPANFRKHKAGDNTPPTGQVF 120
           DKSPLICSASLSLIQSDLSNKSESDIRTNHRFLTGGYIQWPANFRKHKAGDNTPPTGQVF
Sbjct: 61  DKSPLICSASLSLIQSDLSNKSESDIRTNHRFLTGGYIQWPANFRKHKAGDNTPPTGQVF 120

Query: 121 GACLICLTSRYKT 133
           GACLICLTSRYKT
Sbjct: 121 GACLICLTSRYKT 133

[Close]
BLAST of Csor.00g147120 vs. NCBI nr
Match: XP_022148761.1 (outer envelope protein 80, chloroplastic [Momordica charantia] >XP_022148762.1 outer envelope protein 80, chloroplastic [Momordica charantia] >XP_022148763.1 outer envelope protein 80, chloroplastic [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 1.81e-13
Identity = 46/100 (46.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVTTE---TWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           FCGSKK+T QGNSV+     +WG MF+DKSPLICSASLSLIQSD S  +ES+ R      
Sbjct: 77  FCGSKKITQQGNSVSRRANGSWGPMFLDKSPLICSASLSLIQSDASKNAESETR------ 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTSRYKT 133
                          A D+   TG V  + L+C  S   T
Sbjct: 137 ---------------AEDSDKSTGLVGRSSLLCSASLALT 155

[Close]
BLAST of Csor.00g147120 vs. NCBI nr
Match: KAG7035853.1 (Outer envelope protein 80, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 1.49e-11
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVT---TETWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           F GSKK+T +GNSV+   + + GAMFVDKS LICSASLSLIQSD SNK+ES  R  H   
Sbjct: 77  FWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHS-- 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTS 129
                         + G +   TG V  + L+C  S
Sbjct: 137 ------------GRQRGMDNKSTGLVGKSSLLCSAS 158

[Close]
BLAST of Csor.00g147120 vs. NCBI nr
Match: XP_022995029.1 (outer envelope protein 80, chloroplastic [Cucurbita maxima])

HSP 1 Score: 70.9 bits (172), Expect = 3.52e-11
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVT---TETWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           F GSKK+T +GNSV+   + + GAMFVDKS LICSASLSLIQSD SNK+ES  R  H   
Sbjct: 77  FWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHS-- 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTS 129
                         + G +   TG V  + L+C  S
Sbjct: 137 ------------GRQRGMDDKSTGLVGKSSLLCSAS 158

[Close]
BLAST of Csor.00g147120 vs. NCBI nr
Match: XP_022957959.1 (outer envelope protein 80, chloroplastic [Cucurbita moschata])

HSP 1 Score: 70.9 bits (172), Expect = 3.52e-11
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVT---TETWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           F GSKK+T +GNSV+   + + GAMFVDKS LICSASLSLIQSD SNK+ES  R  H   
Sbjct: 77  FWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHS-- 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTS 129
                         + G +   TG V  + L+C  S
Sbjct: 137 ------------GRQRGMDDKSTGLVGKSSLLCSAS 158

[Close]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match: A0A6J1D6D2 (outer envelope protein 80, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017347 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.77e-14
Identity = 46/100 (46.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVTTE---TWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           FCGSKK+T QGNSV+     +WG MF+DKSPLICSASLSLIQSD S  +ES+ R      
Sbjct: 77  FCGSKKITQQGNSVSRRANGSWGPMFLDKSPLICSASLSLIQSDASKNAESETR------ 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTSRYKT 133
                          A D+   TG V  + L+C  S   T
Sbjct: 137 ---------------AEDSDKSTGLVGRSSLLCSASLALT 155

[Close]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match: A0A6J1K4I6 (outer envelope protein 80, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111490707 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.70e-11
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVT---TETWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           F GSKK+T +GNSV+   + + GAMFVDKS LICSASLSLIQSD SNK+ES  R  H   
Sbjct: 77  FWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHS-- 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTS 129
                         + G +   TG V  + L+C  S
Sbjct: 137 ------------GRQRGMDDKSTGLVGKSSLLCSAS 158

[Close]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match: A0A6J1H3L6 (outer envelope protein 80, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459337 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.70e-11
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVT---TETWGAMFVDKSPLICSASLSLIQSDLSNKSESDIRTNHRFL 96
           F GSKK+T +GNSV+   + + GAMFVDKS LICSASLSLIQSD SNK+ES  R  H   
Sbjct: 77  FWGSKKITQRGNSVSRWASGSCGAMFVDKSSLICSASLSLIQSDGSNKAESGTRAEHS-- 136

Query: 97  TGGYIQWPANFRKHKAGDNTPPTGQVFGACLICLTS 129
                         + G +   TG V  + L+C  S
Sbjct: 137 ------------GRQRGMDDKSTGLVGKSSLLCSAS 158

[Close]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match: A0A0A0KZC1 (Omp85 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G290840 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.77e-10
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVTTET---WGAMFVDKSPLICSASLSLIQSDLSNKSESD 85
           FC SKKVT Q +S++      WG++FV+K PLICSAS+SLIQSD+S+KSES+
Sbjct: 77  FCSSKKVTQQESSISRRASWNWGSVFVEKYPLICSASMSLIQSDMSSKSESE 128

[Close]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match: A0A5D3BAJ7 (Outer envelope protein 80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001160 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.56e-10
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 37  FCGSKKVTPQGNSVTTET---WGAMFVDKSPLICSASLSLIQSDLSNKSESD 85
           FC SKKVT + NS +      WG++FV+KSPLIC AS+SLIQSD+S+KSES+
Sbjct: 77  FCSSKKVTQRENSSSRRASWNWGSVFVEKSPLICLASMSLIQSDMSSKSESE 128

The following BLAST results are available for this feature:
BLAST of Csor.00g147120 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g147120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570389.14.19e-93100.00hypothetical protein SDJN03_29304, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022148761.11.81e-1346.00outer envelope protein 80, chloroplastic [Momordica charantia] >XP_022148762.1 o... [more]
KAG7035853.11.49e-1146.88Outer envelope protein 80, chloroplastic [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022995029.13.52e-1146.88outer envelope protein 80, chloroplastic [Cucurbita maxima][more]
XP_022957959.13.52e-1146.88outer envelope protein 80, chloroplastic [Cucurbita moschata][more]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D6D28.77e-1446.00outer envelope protein 80, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1K4I61.70e-1146.88outer envelope protein 80, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A6J1H3L61.70e-1146.88outer envelope protein 80, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0KZC12.77e-1061.54Omp85 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G290840 PE=4 ... [more]
A0A5D3BAJ79.56e-1061.54Outer envelope protein 80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of Csor.00g147120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g147120.m01Csor.00g147120.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0045040 protein insertion into mitochondrial outer membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009527 plastid outer membrane
cellular_component GO:0001401 SAM complex