Csor.00g146060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g146060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 3958188 .. 3961807 (-)
RNA-Seq ExpressionCsor.00g146060
SyntenyCsor.00g146060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCCAAGTCCATTTTAACCATGATGGTTCTTCTTGTTTTCCTTCTTATCAGTGGTAATACTTTCTTTGATCATATTGTGTTTTTTAACATTACTTATAAGAGTGTTTATTGAGCATAAAGATGTTGGATTTTGAATGTAGGAGAAGGCATGATGGTGAGGAGTGGGAATTGGAGGATATGCCGGAGGGTGTTGCCAATATTCACATACCAGGAATGCTACGATGAATACTGCTTGAGGTTATGCCGAGGTCAGCTTGGACCCGATGCCGTTGGAATTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGATCTTGTACCTTCCAAATCTCTCCTTTTAAGAACTTGATGTTTAAAACCACAGCTGTTTAGTTATGTATCGACATGTTACGGAATTTCATTTGAATAAACGAGGGTTGTATTACAATGTTATTACGTTTCAACTTCTTAAACTAATGGATCACCATTCTTAAAAGAATAGGGTAGAGATCTCAGAGGTATACATGGTTGGGATATGGAGATTGATGCCTAGTTCGTGTAGAAATATATTTGGAAGATATTTGGTAAAGATTGATAGAGATATATATAGTAGAGATTTGGTAAAGATGTGATAAAGATATATTTGGTAGAGATATATTTGTTGAATTATATTGGGTAGGTTTAAATCTTTGGAAGCTTAGTAAATTGAAACCATATATATACCCCATTAGTTGGTGCTCTCAAATTGTACTTCTCTTCCTCTATTTTAGGTTGTTGTACAATACCTCAAGTCATCAGAATAAAACCTTTAGCCAATATTCCTCATTATATTTTCTCTTTCGTTCTTTATGTTCATCTTGATCGAGTGTGTGCGTTGTTGAGCGATCCTAATAATTGGTATCAGAGCTAACAACTGGTGTCGATCCTAACACATATGAATATCATGTGGGAGCAATTAGGGGATCTCTAGCTTTTCTTGGTCGTGAACTTGTTTGGATGAGGGCAAGAGACCAAAAGAATTGTTCACTAGATCAAAGATAATATGTTTCGACATTTGGATCGACTGATTCCACCAAGAAACGACCAAGAACACGAGATTAGTTTGTGAGTATTTGACCTTAATTTGTCTTCAAGATTCGAGAGCTAATGTTGGTATTAGAGAATGTTCATCTAGAAAAGAATCCTCAGATTCCGTGTTTAAAGGTATGTGGTTGACTAAAAACTATATAAAATTTACTTTCAAATGGTTGGATACGAGGTCTACAACTCTCGTGAAAGAAGGTAATCGTTTTAGGTTAAGGATCAAAAGATAAAAGAATGCAAAGAAAATAGTTTGGAATGCAAAAACTAAGAAATTAAAAAAGAAAAAAAAAAAAAAAAGGAAGAACAAGGGTTAGACACATGTTGACTAGCGTCCCAGAAGTGTATTTCAACCGGTGGAGACATCTATCACACTAGACATACAAAAACAAGCTTTATCCATACAAGTTATTTAAGGTAGTGTTTCAACTTTGGCTACCGATTAGCGCTGCATAAATAAAACAAGCTACTTTGTAAATCAAAGAAACGAAGGCTAGTTCTTTCCAGAGATGGAATTAGTCGCTTAGTCGATCTACAACATCAGAAAAGGGTGAACCACCCAAATCAAACATATAACATTATTCAACCCAAAAAGAAACAATTTAGAAGCAAATGTTGTCCTATGATCCCTACAAAAGTCATTTGAAGAGGCCCCTCTCCTTTACCTATAAAGATGGGAAAAAAGGAGTATTTAATAATATTTGGTGAGTGACTGTGTAACGACCCTAATTTTTTTTACTTTTAACTTAAGATTGCTACCGTACACACATCATGAACGTTTAATGCAAAGTTAACTCTGATGATATTTTATCATAGCCTCACCATTAAACTTTCATGCTTCGTTTGTTATCTTGAAAATAAATTAAAGTAATACAAAATGAAACGCCTTAGGCTAACCTATATGCTACTAAATAGAAATACAACTCAACTCATACTAACCTATACTATTAAATGGAAATTCAATAATCTACCAAAATTAAATGTGAATCTATCTTATGCATGTGTCACAATCTCGAGATTTGTGATGCCACCGTTAGTCTTACAGGGGCGTCTTGCCTTTACCCGAAAAATATAGTACTTTAATATTTTAAAAATACTCAGTAAGCGACCCCTATCGTGGTTATGATTGAAGGACATACAAATGCATGCATGGTTCCTATTATAACAGTCTCTTGTCCTAAGGTGGCTATCCTAACGAGCAACTTAGATGTGTAATTACTTTCCTACACACGGTCCACACGTGCGAGTATGGACCTACCAGTTGGCTCGCACGCCTCTTGGGTCCCTTTCTGGTCGGGTGAGCATACTCTGTGAGCTGTTGATGCCGGACACCCGTTAGAAGTAGCGACCGTCACAACAACATTATGCTAAACATAAAGATCGTTCTTCTGCATAATCGTGTACGCATTCGTACTATCGTGAAGGAATAGAGGTATCCCTCAATGCATGAGATCCCTAAATCTATCCAGAATACAATCCCACTGACATATATTTCATTGCATAACGTTTTCGTACTATTCCTCATAACGTCTAACATATCAGTTTTCGTACTATTCCTCTGTGAGCTGTTGATGTCGGATACCCATTGGGGTTATATTTCATGCTATTTGTCGTTTTTCATATCATTCATACAACTTATAAGTCATAACATAACATAACATTTTCGTGCTCGCAGACATAACAGTTCATATCATGCACATATCATAGCCTATATCATAACAATCACATAATACATTACAAACACCTCATCAATAAATCACATCATAACATATCATAACATAAAACATAACAAATTCATCGAAAACAGCATAGCAATCACATCGCATGACATTTACGTATTATTTCATGAGATGATGGGATGCAATATTACATTTAGAGACCTTGAACCCGAGTAAAGGCAATCAAAGAAAACAACGGTCTTCTCCTTACATTCAAATATCTTATATGGATGGATACGAATTTGACCTGAAAACTAAAGACAAAACAGTTTTCCAACACCTCACGGTTACAACCCATTAATTTAATTTATCTTGTTGTGCTGCCGTTATTATTAAATACTTACCTTAAATAACGATACAAAAGCCAAAACCATAAACAGATTGTAACACATACCATAAAATCACCAAACTTCCCATAAACAGACTTCTTTGCTTATGTATATAATACCATTAATCAAAGCCAATAATTCACAGCTTAGAGTTTGCAAATTGGTAAAGAAAAGAAACATGAATTCCAAGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTCTTCTCAGTGGTAATACTTTCTTTGATCATATGTTTTTTTTTAACATTACTTATAAGAGTGTTTATTGAGCATAAAGATGTTGGATTTTGAATGTAGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGCTATGCCGAGGTCAGCTTGGACCCGATGCCGATGGGCTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGA

mRNA sequence

ATGAATTCCAAGTCCATTTTAACCATGATGGTTCTTCTTGTTTTCCTTCTTATCAGTGGAGAAGGCATGATGGTGAGGAGTGGGAATTGGAGGATATGCCGGAGGGTGTTGCCAATATTCACATACCAGGAATGCTACGATGAATACTGCTTGAGGTTATGCCGAGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGCTATGCCGAGGTCAGCTTGGACCCGATGCCGATGGGCTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGA

Coding sequence (CDS)

ATGAATTCCAAGTCCATTTTAACCATGATGGTTCTTCTTGTTTTCCTTCTTATCAGTGGAGAAGGCATGATGGTGAGGAGTGGGAATTGGAGGATATGCCGGAGGGTGTTGCCAATATTCACATACCAGGAATGCTACGATGAATACTGCTTGAGGTTATGCCGAGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGCTATGCCGAGGTCAGCTTGGACCCGATGCCGATGGGCTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGA

Protein sequence

MNSKSILTMMVLLVFLLISGEGMMVRSGNWRICRRVLPIFTYQECYDEYCLRLCRGEDMMVRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC
Homology
[Close]
BLAST of Csor.00g146060 vs. NCBI nr
Match: KAG6577324.1 (hypothetical protein SDJN03_24898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 4.84e-83
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MNSKSILTMMVLLVFLLISGEGMMVRSGNWRICRRVLPIFTYQECYDEYCLRLCRGEDMM 60
           MNSKSILTMMVLLVFLLISGEGMMVRSGNWRICRRVLPIFTYQECYDEYCLRLCRGEDMM
Sbjct: 1   MNSKSILTMMVLLVFLLISGEGMMVRSGNWRICRRVLPIFTYQECYDEYCLRLCRGEDMM 60

Query: 61  VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 114
           VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC
Sbjct: 61  VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 114

[Close]
BLAST of Csor.00g146060 vs. NCBI nr
Match: KAF7847019.1 (hypothetical protein BT93_L3438 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 45.8 bits (107), Expect = 9.98e-04
Identity = 17/36 (47.22%), Postives = 23/36 (63.89%), Query Frame = 0 

Query: 79  QVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 114
           ++C    C  LC  +LGP+A G C+   TCNC+YPC
Sbjct: 38  KLCVLAECQALCTQKLGPNATGACINFSTCNCSYPC 73

The following BLAST results are available for this feature:
BLAST of Csor.00g146060 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g146060 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577324.14.84e-83100.00hypothetical protein SDJN03_24898, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF7847019.19.98e-0447.22hypothetical protein BT93_L3438 [Corymbia citriodora subsp. variegata][more]
BLAST of Csor.00g146060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g146060 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g146060.m01Csor.00g146060.m01mRNA