Csor.00g144950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g144950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA repair protein XRCC3 homolog
Location	Csor_Chr12: 12717521 .. 12718401 (-)
RNA-Seq Expression	Csor.00g144950
Synteny	Csor.00g144950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTTACCGAGATTGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAAAGCCGCCTCTCTCTATATCCACACCGAGTTCCCTTTCCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCGATCGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAATGCGTTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCGTTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGGAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATGGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

mRNA sequence

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTTACCGAGATTGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAAAGCCGCCTCTCTCTATATCCACACCGAGTTCCCTTTCCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCGATCGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCGTTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGGAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATGGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTTACCGAGATTGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAAAGCCGCCTCTCTCTATATCCACACCGAGTTCCCTTTCCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCGATCGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCGTTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGGAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATGGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ

Homology

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BLAST of Csor.00g144950 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 6.0e-85
Identity = 161/297 (54.21%), Postives = 204/297 (68.69%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGL  +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQ                     L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 273
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Csor.00g144950 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-34
Identity = 103/291 (35.40%), Postives = 144/291 (49.48%), Query Frame = 0


Query: 7   LHLLQTT-------QKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQ 66
           LHL Q         Q+ + GCP++D+ +GGG+    +T +   S  GKTQL LQLC   Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSLGGLKAASLYIHTEFPFPFRRLQQL---SQAFSSSYP----QISNPSDHIFVEPVH 126
            P   GGL+A ++YI TE  FP +RL QL    +   +  P    +    S+HIF+E   
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAA 185

Query: 127 SAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISG 186
               L + + K    L +R      RL+V+DSIAA FR +F    S +  R+ L   +  
Sbjct: 186 DVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGA 245

Query: 187 KLKLLAKRYSLAVVLTNQ-------------SLCSSGRRVCPALGIAWANCVNSRLFLSR 246
            L+ L+  +   V+  NQ             SL +S  R+ PALGI WAN +  RL + R
Sbjct: 246 TLRRLSSTFRSPVLCINQVTDMVEDQQSVSRSLGASEERLSPALGITWANQLLMRLMVDR 305

Query: 247 NEEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGV 271
             E     D V  G     R   R L V+FAPHLP SSC Y ++ +G+ G+
Sbjct: 306 THE-----DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]

BLAST of Csor.00g144950 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-30
Identity = 98/276 (35.51%), Postives = 130/276 (47.10%), Query Frame = 0


Query: 14  QKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLKAASLY 73
           Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLC   Q P   GGL+A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYP----QISNPSDHIFVEPVHSAQQLFDIMPKIES 133
           I TE  FP +RLQQL        +  P    Q       IF+E V     L + + K   
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 FLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVV 193
            L +R      RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V+
Sbjct: 200 VLLSRGM---ARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVL 259

Query: 194 LTNQ-------------SLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNG 253
             NQ              L     RV PALGI WAN +  RL   R  E           
Sbjct: 260 CINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLRE----------- 319

Query: 254 GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVG 270
            E A     R L V+ APHLP SSC Y I+ +GV G
Sbjct: 320 EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of Csor.00g144950 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.3e-30
Identity = 102/287 (35.54%), Postives = 135/287 (47.04%), Query Frame = 0


Query: 7   LHLL-------QTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQ 66
           LHLL       +  Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLC   Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSLGGLKAASLYIHTEFPFPFRRLQQL---SQAFSSSYP--QISNP--SDHIFVEPVH 126
           LP   GGL A ++Y+ TE  FP RRLQQL    Q   +  P   IS       IF+E   
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAA 185

Query: 127 SAQQLFD-IMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKIS 186
               L   +  K+   LA        RL+VIDS+AA FR +FD   + L  R+     + 
Sbjct: 186 DVDTLLQCVREKVPVLLARG----MARLVVIDSVAAPFRCEFDG--AALALRAQRLLALG 245

Query: 187 GKLKLLAKRYSLAVVLTN--------QSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEV 246
            +L+ L+  +   V+  N        Q L +    + PALGI WAN +  RL   R    
Sbjct: 246 AELRRLSCAFRSPVLCVNQVTEAVEEQDLVAGPPGMSPALGITWANQLLVRLLADRQRP- 305

Query: 247 VGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGV 271
                      E       R L VVFAPHLP SSC Y I  +GV G+
Sbjct: 306 ----------EEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVRGM 335

[Close]

BLAST of Csor.00g144950 vs. ExPASy Swiss-Prot
Match: O15315 (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-23
Identity = 83/266 (31.20%), Postives = 137/266 (51.50%), Query Frame = 0


Query: 23  IDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLKAASLYIHTEFPFPF 82
           +D ++ GGVAC SLTEI    GCGKTQ C+ +   A LP ++GGL+ A +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQISNPSDHIFV--EPVHSAQQLF--DIMPKIESFLANRDSPLPTR 142
            RL ++++   S +P+  N  + + +    VH  ++L   +++ +IES L         +
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIES-LEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQ------- 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+ +S+ V+LTNQ       
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 SLCSSGRRVCPA------LGIAWANCVNSRLFLSRNEEVVGEGDGVVNGGELAQ--RRTR 262
           +L S    V PA       G + ++CV + L  + +          VN   + Q     R
Sbjct: 270 ALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHS--------VNTRLILQYLDSER 329

Query: 263 RWLHVVFAPHLPKSSCEYVINRQGVV 269
           R + +  +P  P +S  Y I  +G+V
Sbjct: 330 RQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]

BLAST of Csor.00g144950 vs. NCBI nr
Match: KAG6586077.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 553 bits (1425), Expect = 1.06e-198
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNGGELAQRR 240
           YSLAVVLTNQSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNGGELAQRR
Sbjct: 181 YSLAVVLTNQSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNGGELAQRR 240

Query: 241 TRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           TRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 TRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273

[Close]

BLAST of Csor.00g144950 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 541 bits (1394), Expect = 1.18e-193
Identity = 273/293 (93.17%), Postives = 273/293 (93.17%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Csor.00g144950 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 537 bits (1383), Expect = 5.60e-192
Identity = 271/293 (92.49%), Postives = 271/293 (92.49%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL AASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Csor.00g144950 vs. NCBI nr
Match: XP_022969693.1 (DNA repair protein XRCC3 homolog [Cucurbita maxima])

HSP 1 Score: 530 bits (1366), Expect = 2.18e-189
Identity = 266/293 (90.78%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGGVACNSLTEIV+ESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGI WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Csor.00g144950 vs. NCBI nr
Match: XP_023538317.1 (DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526 bits (1356), Expect = 7.30e-188
Identity = 266/293 (90.78%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCH AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHFAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL A+SLYIHTEFPFPFRRLQQ SQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQFSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIE FLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIEFFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGISALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Csor.00g144950 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 541 bits (1394), Expect = 5.70e-194
Identity = 273/293 (93.17%), Postives = 273/293 (93.17%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Csor.00g144950 vs. ExPASy TrEMBL
Match: A0A6J1I1Q9 (DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=4 SV=1)

HSP 1 Score: 530 bits (1366), Expect = 1.06e-189
Identity = 266/293 (90.78%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGGVACNSLTEIV+ESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGI WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Csor.00g144950 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 484 bits (1247), Expect = 1.49e-171
Identity = 247/294 (84.01%), Postives = 259/294 (88.10%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVAC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQS--------------------LCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                     LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273
           EEVVGEG+G++NG EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Csor.00g144950 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 5.86e-171
Identity = 246/293 (83.96%), Postives = 257/293 (87.71%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+AC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQS--------------------LCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                     LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 272
           EEVVGEG+G+VNG EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Csor.00g144950 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 5.86e-171
Identity = 246/293 (83.96%), Postives = 257/293 (87.71%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+AC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGL A+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQS--------------------LCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                     LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNGGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 272
           EEVVGEG+G+VNG EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Csor.00g144950 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 315.5 bits (807), Expect = 4.3e-86
Identity = 161/297 (54.21%), Postives = 204/297 (68.69%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGL  +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQ                     L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 273
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Csor.00g144950 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 315.5 bits (807), Expect = 4.3e-86
Identity = 161/297 (54.21%), Postives = 204/297 (68.69%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGL  +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQ                     L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 273
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Csor.00g144950 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-23
Identity = 82/285 (28.77%), Postives = 140/285 (49.12%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSL 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QL    Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLKAASLYIHTEFPFPFRRLQQLSQA---------------FSSSYPQISNPSD---HI 124
           GGL   ++YI TE  F   R  Q+++A               F ++  Q+  P D   +I
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQM-KPEDILENI 213

Query: 125 FVEPVHSAQQLFDIMPKIESFLA-NRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSA 184
           F   V S  +   ++  +E F++ N+D     +++++DSI   FR D+D    DL +R+ 
Sbjct: 214 FYFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTR 273

Query: 185 LFFKISGKLKLLAKRYSLAVVLTNQ---SLCSSGRRVCPALGIAWANCVNSRLFLSRNEE 244
           +  +++ K   LAK++SLAVVL NQ          ++  ALG +W++   +R+ L  N  
Sbjct: 274 VLSEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDSWSHSCTNRVILYWN-- 333

Query: 245 VVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGV 268
               GD              R+ ++  +P LP +S  Y +  +G+
Sbjct: 334 ----GD-------------ERYAYIDKSPSLPSASASYTVTSRGL 350

[Close]

BLAST of Csor.00g144950 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-23
Identity = 82/285 (28.77%), Postives = 140/285 (49.12%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSL 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QL    Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLKAASLYIHTEFPFPFRRLQQLSQA---------------FSSSYPQISNPSD---HI 124
           GGL   ++YI TE  F   R  Q+++A               F ++  Q+  P D   +I
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQM-KPEDILENI 237

Query: 125 FVEPVHSAQQLFDIMPKIESFLA-NRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSA 184
           F   V S  +   ++  +E F++ N+D     +++++DSI   FR D+D    DL +R+ 
Sbjct: 238 FYFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTR 297

Query: 185 LFFKISGKLKLLAKRYSLAVVLTNQ---SLCSSGRRVCPALGIAWANCVNSRLFLSRNEE 244
           +  +++ K   LAK++SLAVVL NQ          ++  ALG +W++   +R+ L  N  
Sbjct: 298 VLSEMALKFMKLAKKFSLAVVLLNQVTTKFSEGSFQLALALGDSWSHSCTNRVILYWN-- 357

Query: 245 VVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGV 268
               GD              R+ ++  +P LP +S  Y +  +G+
Sbjct: 358 ----GD-------------ERYAYIDKSPSLPSASASYTVTSRGL 374

[Close]

BLAST of Csor.00g144950 vs. TAIR 10
Match: AT3G22880.1 (DNA repair (Rad51) family protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-17
Identity = 74/273 (27.11%), Postives = 124/273 (45.42%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MT  + L   ++  K T GC  +D  +GGG+  +++TE   E   GKTQL   LC   QL
Sbjct: 93  MTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQL 152

Query: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           P ++ G      YI TE  F   R+  +++ F      +    D+I     ++ +  +++
Sbjct: 153 PTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAV---LDNIIYARAYTYEHQYNL 212

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           +      LA + S  P R++++DSI ALFR DF     +L  R     ++  +L  +A+ 
Sbjct: 213 L----LGLAAKMSEEPFRILIVDSIIALFRVDFTGR-GELADRQQKLAQMLSRLIKIAEE 272

Query: 181 YSLAVVLTNQSLCSSGRRVC------PALGIAWANCVNSRLFLSRNEEVVGEGDGVVNGG 240
           +++AV +TNQ +   G  +       PA G   A+    RL   +     G+GD      
Sbjct: 273 FNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLLFRK-----GKGD------ 332

Query: 241 ELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGV 268
                   R   V  AP+L ++   + I + G+
Sbjct: 333 -------TRVCKVYDAPNLAEAEASFQITQGGI 339

The following BLAST results are available for this feature:

BLAST of Csor.00g144950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	6.0e-85	54.21	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	8.3e-34	35.40	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
O43542	1.9e-30	35.51	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
Q08DH8	7.3e-30	35.54	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O15315	3.0e-23	31.20	DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2	[more]

BLAST of Csor.00g144950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586077.1	1.06e-198	100.00	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022938282.1	1.18e-193	93.17	DNA repair protein XRCC3 homolog [Cucurbita moschata]	[more]
KAG7020901.1	5.60e-192	92.49	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022969693.1	2.18e-189	90.78	DNA repair protein XRCC3 homolog [Cucurbita maxima]	[more]
XP_023538317.1	7.30e-188	90.78	DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g144950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDM2	5.70e-194	93.17	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]
A0A6J1I1Q9	1.06e-189	90.78	DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=...	[more]
A0A0A0LK93	1.49e-171	84.01	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A5A7UPR6	5.86e-171	83.96	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BRJ5	5.86e-171	83.96	DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV...	[more]

BLAST of Csor.00g144950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	4.3e-86	54.21	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	4.3e-86	54.21	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	1.0e-23	28.77	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	1.0e-23	28.77	RAS associated with diabetes protein 51C	[more]
AT3G22880.1	1.1e-17	27.11	DNA repair (Rad51) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 143..167 score: 19.49 coord: 25..53 score: 41.29
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..272
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..272 e-value: 1.4E-61 score: 210.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..268
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 12..268 e-value: 1.1E-38 score: 133.0
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..191 score: 42.525974
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..268 e-value: 1.11048E-79 score: 238.637

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g144950.m01	Csor.00g144950.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0003677	DNA binding