Csor.00g144430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g144430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA polymerase II transcription factor B subunit 2
Location	Csor_Chr03: 9417759 .. 9424387 (-)
RNA-Seq Expression	Csor.00g144430
Synteny	Csor.00g144430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATATGGGAAGCAGGCAGAGAGTCAATCGTCAAACTACGAAGGTTGATTAGCTGTTAATTATTTGATTGATTGATTGATTTCAGAAGATCCAAGACTTCACCATTGGCTATAAATTCTCACTGCGGTCTCACTCCCGAGCTGGAAGCTGCAATTCTTTATAATTCCTGATTCTGTGTATCCGACACTCGAGGGATTCTCCTTTGCTTGCTGGAAGTTTTGCAGAACCCTAAAGGAATAGCTACGGAGAGAAGGAAAGCTCAATCCAGAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAGCTCTATGAGAATGCCTTCATCTGCGAAGCCATTCTCAGGTCCTTGCTTGCTACTCTAAATGCTTTTATTTTTTTGTTTCGGGTCGTATTAATTACTGAAACGACTAAAACCTTGAGTTTGTATGTGATCGTGTTGGCCATCTGACCATAATTTTCATATCCTGGAAACTTGTTCATTATACGATGTCATTGAAGCTGTTTATTTATTTATTATTTGATTCATATGTTCTAGTTTTGATATTGATGCTGAATTTCCGTATTTTTTTTAATTAGTTGTTGTCATTTTTCCCTCTCGTTCATTGAGTTAGAGGACTGTGGGCAAAGTTCTTGGTATTTGCTAGTGAATTTAACTTAGAAGTAGCTGGTTAATCCTAGTTTCTGAGTTTTTCATTTATAAGTGTGTCAAACATCTTTTGTAATCAGGTCACTTCCACCCCTGGCCAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTAACAGCCAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCGAAGTATAAGGTTGCCGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCGGATAGGTGTTTATTCTCTTCTCGCATTTTCCATAGAATTTGATATTCTTTCACAATGCTTTTCAAATGCATCCTTAGTTATATTAGATCCAAGCAAGCTGACATTCAAGCGTTCAAGAGGAAGGCCAAGTTTTTGGAGTTTTTTTTTTCTTTTTCTTTTTATCTTCATCTTTTTCTCTGATGTTTCTTTCCATCAGTTGATAGATTGCCCACCTATTCATATCATGATATCATCAGAATTGAGAGGTTCATGCAAGGAGAAATTTAAATTTTGAACTTGTGGAGCAATATGTAAATGCTTTTGCATTATTTCTGTTTTGATCTCACTGAAATTGTTTATAATTCTGTCAGCAGTTTTGCATGGTTTGTAGTGCTCAACCCAATCCTTTGTTGTAATGTTTTCTGTGAACCCCCATTTTATTGATAGGAAAAGAGAAACAACCTACAAGCTAAATCCAACGTTCCAAGCTAACCTCCAAAAGCTTTTAATTCATGGGTATGTTTTCTCTCACTTGGCTCGGTGAATGCATTTCTAAACCAAATATGCAAGGAGGGATACGTGATTTGTCCCATTTCCATTCTACTCAGCACAAACATTATGATGCATGGATCTTTCTTAATATATGCACATTTTCTTTTTTACTTTCTGCCTTATTTGCATTCGCCAAGTTCAAGTAGATGATTACTCATCTTCTATAAAAGGAAGCTGATCCTGGAGTTTAGACACCTTGATTTTAACATTTAAAAGTGATTTACTCTTGGTTTAGAAAATGACAATGAATTTGGGATCTTGCAGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATTACCGTGAGGCTTCCAAATTTGGAAGAACTTGAGGCTTATGCTCTGGATCAGTGGGAGGTTGGACAATTATCAAAATAATTTTAATTATATGTATCTGGTTGCATCCTCTCTAGTTTATTCTGCGGCTAGTATTGATTCCATCCTCTTGGACTCAATGAAAGGCTACCTGTTTTCTCAGTTGCTTACTTTACAAGTTTTGATCGTGGATATTCTTATGATCTGTTATTGTGTTCGTTCAGTGCTTCTTGCTGCAATTGATAAACTCAGGCCAAGCGGATAAGCCCTCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGTTAAAATCTTGTTCAATGTACACTCGCTTATATATTGCAATGACTTATTATGCCTGATAATATGACATGTATGGTATCCAGGGATAAAGAAACTCCACGATTAACTGAGAGCGGTTTCCAGTTCTTGGTATGAATCACATGAACCATAGACTTCTTGAAATCCGCATTGATCTATCTCACCAGGGATTCTTGTGATGTATGTAAACTTCAGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCCGAGGTTTGTTTGTGATTTTCCATTTTTTATTGTCATGTCCTATTGCCTTCCTCTGAGGAAAAACTATATATATTCTGTCATTAATTTGGAACACTTTCTATTTGAATCCCAATGATGGACTATTGTTACTCAAAGTAAAAACCAACTATTGTTAATTTTTAGACTGTTTTCTTTTGATTCATTGGTTTGTGTAATTTTATTATTTATTTTCTCTTATTCCTTTTTTGTAAATGCTTTATCAATATGGTGCAGGAGCGAGATGTTGATCCTGCAGATTTGATTTCTTTTCTGCTGGAGCTTAGTTTTCACGTGACAGGAGAGGTATCAATTCTTTGATCATCTTTTAATTCCTTGTTTTCATCTTTATCTTTTATTGTTGTGTTCTTCTTTTTTATCATTATAGAACTCCTCTTTTAAGCCTTTTTGCTTCATATCATTTTAGTGCCGAACTACTTTGGGTTGATTCAGGAGGATTTTTTTTTCTTAACACAGATTGATTATATTTAGTTTGTTATACGGTGCACTAATCCTAATTTACCTTCGGTTGTTTATGTTTAGGTTGAATTTGATTGGAACTTTATCCATATTCTTTTTCATTTATATAATGATTGTCACTCTTACGTGAAGAGTTTGTTTTAGAAAATAAACAAAGGGCTTTAGGGTTTTGTTTTCCTCCAGCGTAAGAGTGAATAACTATATTAATTATGGAGAATAAAGAACAAGTTGAGGAAAGGCATCAACCCAGTTAAGAACCACTGGGATGAGTTTCTTTCATCAACGCTTGCTGCATCGTGGTCTTAGCAACATAAAGTGATCTGGTTTTGAGTTTCCATATTTCCTGTGCATGTGATACACAAGGAGAGAGGGATCATATGGGTTCTCCTTCGATAAAGTTTGGCGAGTATTAATCCTCCTCATAGCAAGATACAGAATGAAAAATATAATTTTCTTTGGGTTTCCTCACCTCCACTTCAGGTAACCTTTTAAACAAGTTGCATCTCTGTTAGCAGAAATGGTAATCATTTCAAGTCTCGAGTTTGTCCAAATTCCATCTCAATCTGCAGGTTGTCAATTTGGACTGTGGTTTTTGACAGTGCTTAGCAGCCGAGTGAGACAAGTACTCAGTAGCTTCTCTATCATTTAGTGGCCTATTGAAATCAATCTTTTAGTTCTCCCATTCCAGCAGTCAGCTAACTCTTCATTTTTAAAGCTAGGCAACTGAATTCTACAGATAACTACCCTCTGAAGAATATTCAAAGCCTATGTACTTTTGTGGTGGCTATTTGTTGGTTCCGTTAACAAGTTTGAAGGAGAAACTACTAATTCTCACCTCACCACAAACTTCCAAGGGCCGCTGCTTCTCATTTTCCTATGGTGAACTAGTAGATGTAAATCAATTGTCTCTATCAATTCCACTTAGACGCATTTTAAGAGGGATAAATTACTTCCACAATGTAACTCCAAAACCTTCATCATCCCTCTCTCCCATCTCTTAATCAAGAACAGCTGCACGCTAATCCTCTGAGAACTATAATAAATACTAATAATCCATATAACTAACTTTTATAAAATTAATTCATTATTTACTGTCTAATAACCATCATGTTTCGTGTTTGTTTTGTAGGCTTATGATATTGATACACTGACAGAAGAACAGAGGTATGCTATCAAGGACCTTGCTGATTTGGGACTAGTTAAGCTTCAGCAGGTTTGTGGCTAGCCTCTGCTGCTTTTTAAATTGAACATGACCTTTGCTCAAGTTCTTACTTTATTTTAACTTCACCTTTTTTCTTTTTCTTTTTCTGTTGTGCTTTTCGCTGTTAATTTGTCCAGGGTAGAAAAGACAGTTGGTTCATACCTACTAAATTAGCCACGAATCTTTCAATGAGTTTGGCAGATTCTTCTTCGAGGAAACAGGTTAGTGTTTCTAAATTATATTTGAATTTGATATATTTCTCAGAAGTTTCATTTTATTACAGTTAGTTTTTTTATCGGTTTGTGTGTTTTGTATGATAGCTTTTTTTTCCATAATTATCCTTTAGTTATACATATAGAGTATCCTCAGGTATATGTCTTATCCTCGTTACCTTTTCTGTAATTATTATTTGACAGAAACTTGTTTTTGGTATTAAATAACTCAGTTGTCTTTTTTTCTTTGGTCCTAGTTCGGAGGCTTTATAATTTTTTTTTTGTTCTTAATTGTCTTCCTGTTCTTTATCCAGGGATTTGTTGTCGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCGAGGTATATGTTATCAATTAATGTTATATTACATCATATAACCAATGTTTGAGTTAGCTTTAACTACCATGAGTTGACCTATTGGGTCAATAAGGACCCATGTAAATAAGACATAGCTTATATATGCCAACTACACTAGATTAGTATCCTACGAGTTACCTTGACAACCAAATGTAATAGGGTCAATTAGTTGTTCCATAAGAATAGTTCGAAGATGTACAAATGGCTCAAACACTAATATTTACCTTACTTTTTCTTCTTGAATGCTAAATATATTTGAATTCCCCACCCCTGCTAGACCCTCTGGAAATTCACATATGCTTGGAGGAAGGAGGGGCAAGCTGAGGGGTAACTTAGTCATTAGCATGCTTCTTGAGGTTGCAAGCAACTAGTGATAGATTCTGTAAGGTCAGTAGGGCCAATTAAGCATTGGAATACTGTTACATAATATGTTAATAATAATTCAATAGTTATAGTGTTATACTTGTGTAAATTAGAAAAGCTGCTGCTCTTCTTAACTAAATATAATTCTCTTTCACCTTTGTGTTAAATTTTTACAACAAATTTATTTGATTATTTTAAGGTCCGTTTTTTTAATTGTATTCTTACCAGTAGCACTTGTAATAGTTGATTAAATAGGGATATGATTCAAGTTCAACATTCTACATTTTACGTACTGCGTGGTGAATGCAGTAATTTTCTTTCCTGTTGAATTGAACCACGTAGTGAAGCAATCTAACCGCACTTATCAACTTTCTATTTGGTTCAAGAATGGTACATAAAACGAAACTGTTCTTCTGCAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACGGCACAGCAGGCAAGTTTTCTGCTCGTTCACCCTGACACGTTACTGCTAGTCTTATGAAGTATGCGTACCATTATATTATATTCAAGTTGCCAATGGATTGCAGTAGACCAGTTCTCCTTTGCGCTTCATTAGTTCATAATATCTTTTGCGTTTGTAGCACCGTTAATTCTTGCTAGCAGTGGTGTACTTGGAGAGTTCTCCCCAATTCTAATTATTATTCCGTACAAGTGCCAAACCCATTGTTATCGGCCAGCCACAAAGGACTTCAAGTAGCATAGGCTCCTAATCCACAAGAAACAATCATTCTATTTTTCTTGTGTGCATCAATCTAAATTCTCTCGTAAACTTAATGTAAACTCTGAATATCTTTTTGAGTTCAAAAAAATATTAAAACAAACGACACATGTATTCATTCAATTACATTAAGGACATTGCTACAGTTTTCTATGCTGGTTTTCTCATCTCAAATTGCTTGATATCTGACTATTGTTTTGCAGATAGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCAGAAAATGTCACGGATCAGGTTTGGGTTGCTTTATTAAATTCTTTGATGTTTGGCAAGCGGCAAGCCAATGGTTTCTTGCCTACAAATCAACCCTTGCTTGGCATGGAAACCAAAAACGTCTATATATGATATCGTCTGACAATTTTATCAAATCTTTGTACTGTTCCTGATTTTTTCCGTTGCTCCTTGCTCCATGACAGATTAGGCTTTGGGAATCGGATCTTAATAGAGTTGATATAACTCCCGCACATTTTTACGACGAATTCCCTTCCAGGGTATGAATTTTGAATATTGCTTCTTTTAACTTTGAAGCTTACTTGTACATTCACCTGAAAAATCACCTGAGAAGGAATTGCTTTGGTATTCCAGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAATGGGTTGCTATGGGAGGACTCGAAAACCTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGGGAACATCTTCGCCGTCAAAAGTAG

mRNA sequence

ATGGACGATATGGGAAGCAGGCAGAGAGTCAATCGTCAAACTACGAAGAACCCTAAAGGAATAGCTACGGAGAGAAGGAAAGCTCAATCCAGAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAGCTCTATGAGAATGCCTTCATCTGCGAAGCCATTCTCAGGTCACTTCCACCCCTGGCCAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTAACAGCCAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCGAAGTATAAGGTTGCCGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCGGATAGGAAAAGAGAAACAACCTACAAGCTAAATCCAACGTTCCAAGCTAACCTCCAAAAGCTTTTAATTCATGGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATTACCGTGAGGCTTCCAAATTTGGAAGAACTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCAGGCCAAGCGGATAAGCCCTCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAACTCCACGATTAACTGAGAGCGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCCGAGGAGCGAGATGTTGATCCTGCAGATTTGATTTCTTTTCTGCTGGAGCTTAGTTTTCACGTGACAGGAGAGGCTTATGATATTGATACACTGACAGAAGAACAGAGGTATGCTATCAAGGACCTTGCTGATTTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGACAGTTGGTTCATACCTACTAAATTAGCCACGAATCTTTCAATGAGTTTGGCAGATTCTTCTTCGAGGAAACAGGGATTTGTTGTCGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCGAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACGGCACAGCAGATAGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCAGAAAATGTCACGGATCAGATTAGGCTTTGGGAATCGGATCTTAATAGAGTTGATATAACTCCCGCACATTTTTACGACGAATTCCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAATGGGTTGCTATGGGAGGACTCGAAAACCTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGGGAACATCTTCGCCGTCAAAAGTAG

Coding sequence (CDS)

ATGGACGATATGGGAAGCAGGCAGAGAGTCAATCGTCAAACTACGAAGAACCCTAAAGGAATAGCTACGGAGAGAAGGAAAGCTCAATCCAGAATGCCTCAAGTAAAGATCATAGCGAAGAATTTTATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGATCAGCTCTATGAGAATGCCTTCATCTGCGAAGCCATTCTCAGGTCACTTCCACCCCTGGCCAAGAAGTTTGTTTTACAAATGTTATACATTGATGCTCCAGTAACAGCCAAGTCCATGGAGGAGTGGGTGCTCCCAGATGGAGTCTCGAAGTATAAGGTTGCCGTTGATCGATTGATTCAATTGAGAGTATTTATTGAGACTGCGGATAGGAAAAGAGAAACAACCTACAAGCTAAATCCAACGTTCCAAGCTAACCTCCAAAAGCTTTTAATTCATGGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATTACCGTGAGGCTTCCAAATTTGGAAGAACTTGAGGCTTATGCTCTGGATCAGTGGGAGTGCTTCTTGCTGCAATTGATAAACTCAGGCCAAGCGGATAAGCCCTCAAATATTAGTTCTTCTGTGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAGAGGGATAAAGAAACTCCACGATTAACTGAGAGCGGTTTCCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATCATCAGAGAATATATATCTAATGCCGAGGAGCGAGATGTTGATCCTGCAGATTTGATTTCTTTTCTGCTGGAGCTTAGTTTTCACGTGACAGGAGAGGCTTATGATATTGATACACTGACAGAAGAACAGAGGTATGCTATCAAGGACCTTGCTGATTTGGGACTAGTTAAGCTTCAGCAGGGTAGAAAAGACAGTTGGTTCATACCTACTAAATTAGCCACGAATCTTTCAATGAGTTTGGCAGATTCTTCTTCGAGGAAACAGGGATTTGTTGTCGTGGAGACAAATTTCAGGATGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCGAGGATTGAGTATCAACTTCCAAATCTTATAGTTGGAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGGATTACGGCACAGCAGATAGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCAGAAAATGTCACGGATCAGATTAGGCTTTGGGAATCGGATCTTAATAGAGTTGATATAACTCCCGCACATTTTTACGACGAATTCCCTTCCAGGGAAGTTTTCGAGGCTGCTTGCGACTATGCACGGGAATGGAATGGGTTGCTATGGGAGGACTCGAAAACCTTGCGACTGGTAGTGAAGGCAGACATACACACACATATGCGGGAACATCTTCGCCGTCAAAAGTAG

Protein sequence

MDDMGSRQRVNRQTTKNPKGIATERRKAQSRMPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLSQRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK

Homology

[Close]

BLAST of Csor.00g144430 vs. ExPASy Swiss-Prot
Match: Q680U9 (General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thaliana OX=3702 GN=TFB2 PE=2 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 1.2e-208
Identity = 354/450 (78.67%), Postives = 404/450 (89.78%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQ 482
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of Csor.00g144430 vs. ExPASy Swiss-Prot
Match: Q92759 (General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-68
Identity = 153/453 (33.77%), Postives = 257/453 (56.73%), Query Frame = 0


Query: 34  QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKS 93
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 94  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQ-KLLIHGEVLA 153
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 154 REPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLL-S 213
            +           ++  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 214 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 273
               E P +T +GFQFLL++T AQLWY + +Y+  A+ R +D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 274 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLS--MSLADSSSRKQGF 333
            Y ++ +++     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 334 VVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVT 393
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITAQQI+ 
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 370

Query: 394 FLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAR 453
           FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE    +AR
Sbjct: 371 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHAR 430

Query: 454 EWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 483
           E   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 ELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]

BLAST of Csor.00g144430 vs. ExPASy Swiss-Prot
Match: P60027 (General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-68
Identity = 153/453 (33.77%), Postives = 257/453 (56.73%), Query Frame = 0


Query: 34  QVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKS 93
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 94  MEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQ-KLLIHGEVLA 153
           +  WV  +     + +   L  LR++             LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 154 REPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLL-S 213
            +           ++  L+ YA ++WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 214 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 273
               E P +T +GFQFLL++T AQLWY + +Y+  A+ R +D  +++SFL +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 274 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLS--MSLADSSSRKQGF 333
            Y ++ +++     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 334 VVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVT 393
           +VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GITAQQI+ 
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 370

Query: 394 FLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAR 453
           FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE    +AR
Sbjct: 371 FLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHAR 430

Query: 454 EWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 483
           E   L++E+S    +VV    H+ ++   +RQK
Sbjct: 431 ELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459

[Close]

BLAST of Csor.00g144430 vs. ExPASy Swiss-Prot
Match: O70422 (General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.3e-68
Identity = 153/459 (33.33%), Postives = 259/459 (56.43%), Query Frame = 0


Query: 28  AQSRMPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDA 87
           A+  + +  +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ 
Sbjct: 6   ARGGLNRAHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQ 65

Query: 88  PVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQ-KLLI 147
           P+   ++  WV  +     + +   L  LR++             LNP F+ NL+  LL 
Sbjct: 66  PLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLG 125

Query: 148 HGEVLAREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQ 207
            G+  + +           ++  L+ YA ++WE  L  ++ S  A    +++  +    Q
Sbjct: 126 GGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---Q 185

Query: 208 KGLL-SQRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELS 267
            GL+ S    E P +T +GFQFLL++T AQLWY + +Y+  A+ R +D  +++SFL +LS
Sbjct: 186 AGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLS 245

Query: 268 FHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLS--MSLADSS 327
           F   G+ Y ++ +++     ++ L + GLV  Q+ RK   + PT+LA NLS  +S A  +
Sbjct: 246 FSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGT 305

Query: 328 SRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGIT 387
             + GF+VVETN+R+YAY+ S+L   ++ LFS + Y+ PN++V  +T+ES+  A  +GIT
Sbjct: 306 VHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT 365

Query: 388 AQQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEA 447
           AQQI+ FL+  AHP + ++ P +P  +TDQIRLWE + +R+  T    Y++F S+  FE 
Sbjct: 366 AQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL 425

Query: 448 ACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRRQK 483
              +ARE   L++E+S    +VV    H+ ++   +RQK
Sbjct: 426 LLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460

[Close]

BLAST of Csor.00g144430 vs. ExPASy Swiss-Prot
Match: Q6CLR2 (General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TFB2 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.2e-63
Identity = 146/487 (29.98%), Postives = 254/487 (52.16%), Query Frame = 0


Query: 44  DMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGV 103
           D +  LP     +LYE+   C AI R L P+AK F++ ML+ D  V+ + +++WV PD  
Sbjct: 12  DYLEGLPEQVQSRLYESPATCLAIYRLLSPMAKFFIMSMLFQDHDVSLRDLDKWVKPDAK 71

Query: 104 SKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVR 163
            + + ++  +  L + IE  + K+    +LNP F+ + + +L  GE+       ++    
Sbjct: 72  YQLQYSIKSMKSLNLIIE-GESKQPLLIRLNPIFKKSFKNVLTGGEINNSFGDVADDDTN 131

Query: 164 LPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQ-KGLLSQRDKETPRLTE 223
             +   L+ Y+ ++WE  L  ++ +   + P      V+ + Q  GL+ + +    ++T 
Sbjct: 132 PVSTATLDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITN 191

Query: 224 SGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQ 283
            GFQFLL + NAQ+W ++ +Y+  AE   +DP D+++F+  L     G+AY  D L+  Q
Sbjct: 192 QGFQFLLQDVNAQMWTLLLQYLKMAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNTQ 251

Query: 284 RYAIKDLADLGLVKLQQGRKD-SWFIPTKLATNL--------SMSLA------------- 343
           R  ++D+ D GL+   Q + D + F PT+LAT L        S S+A             
Sbjct: 252 RTMLQDMRDYGLI--YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTA 311

Query: 344 --------DSSSRKQ-GFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITK 403
                   +++ R Q G +++ETNF++Y+YS+S L   IL LF  ++ +  N++ G +T+
Sbjct: 312 VEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTR 371

Query: 404 ESLYNAFKNGITAQQIVTFLQQNAHPR------------------VAERIPSVPENVTDQ 463
           ES+ NA  NGITA+QI+ +L+ +AHPR                  V E +  +P  V DQ
Sbjct: 372 ESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQ 431

Query: 464 IRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTH 481
           IRLW+ +L+R+     + Y +F S + ++   DYA++   LLW++ K     V  + ++ 
Sbjct: 432 IRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQ 491

[Close]

BLAST of Csor.00g144430 vs. NCBI nr
Match: KAG6604444.1 (General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 948 bits (2450), Expect = 0.0
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0


Query: 1   MDDMGSRQRVNRQTTKNPKGIATERRKAQSRMPQVKIIAKNFMDMVASLPAMKLDQLYEN 60
           MDDMGSRQRVNRQTTKNPKGIATERRKAQSRMPQVKIIAKNFMDMVASLPAMKLDQLYEN
Sbjct: 1   MDDMGSRQRVNRQTTKNPKGIATERRKAQSRMPQVKIIAKNFMDMVASLPAMKLDQLYEN 60

Query: 61  AFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFI 120
           AFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFI
Sbjct: 61  AFICEAILRSLPPLAKKFVLQMLYIDAPVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFI 120

Query: 121 ETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPNLEELEAYALDQWEC 180
           ETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPNLEELEAYALDQWEC
Sbjct: 121 ETADRKRETTYKLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPNLEELEAYALDQWEC 180

Query: 181 FLLQLINSGQADKPSNISSSVMKVFQKGLLSQRDKETPRLTESGFQFLLMETNAQLWYII 240
           FLLQLINSGQADKPSNISSSVMKVFQKGLLSQRDKETPRLTESGFQFLLMETNAQLWYII
Sbjct: 181 FLLQLINSGQADKPSNISSSVMKVFQKGLLSQRDKETPRLTESGFQFLLMETNAQLWYII 240

Query: 241 REYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQG 300
           REYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQG
Sbjct: 241 REYISNAEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQG 300

Query: 301 RKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQ 360
           RKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQ
Sbjct: 301 RKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQ 360

Query: 361 LPNLIVGAITKESLYNAFKNGITAQQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESD 420
           LPNLIVGAITKESLYNAFKNGITAQQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESD
Sbjct: 361 LPNLIVGAITKESLYNAFKNGITAQQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESD 420

Query: 421 LNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRR 480
           LNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRR
Sbjct: 421 LNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIHTHMREHLRR 480

Query: 481 QK 482
           QK
Sbjct: 481 QK 482

[Close]

BLAST of Csor.00g144430 vs. NCBI nr
Match: XP_023543805.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 891 bits (2303), Expect = 0.0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. NCBI nr
Match: XP_022977542.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima])

HSP 1 Score: 889 bits (2296), Expect = 0.0
Identity = 450/451 (99.78%), Postives = 450/451 (99.78%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. NCBI nr
Match: XP_022925808.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita moschata])

HSP 1 Score: 885 bits (2288), Expect = 0.0
Identity = 449/451 (99.56%), Postives = 449/451 (99.56%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLY NAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. NCBI nr
Match: XP_004134713.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis sativus] >KGN49219.1 hypothetical protein Csa_003950 [Cucumis sativus])

HSP 1 Score: 867 bits (2239), Expect = 0.0
Identity = 436/451 (96.67%), Postives = 446/451 (98.89%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. ExPASy TrEMBL
Match: A0A6J1IIT5 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111477843 PE=3 SV=1)

HSP 1 Score: 889 bits (2296), Expect = 0.0
Identity = 450/451 (99.78%), Postives = 450/451 (99.78%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. ExPASy TrEMBL
Match: A0A6J1EGA7 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111433104 PE=3 SV=1)

HSP 1 Score: 885 bits (2288), Expect = 0.0
Identity = 449/451 (99.56%), Postives = 449/451 (99.56%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLY NAFICEAILRSLPPLAKKFVLQMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSKTLRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. ExPASy TrEMBL
Match: A0A0A0KK55 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_6G517270 PE=3 SV=1)

HSP 1 Score: 867 bits (2239), Expect = 0.0
Identity = 436/451 (96.67%), Postives = 446/451 (98.89%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISNAEER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           VETNFRMYAYS+SKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFL
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQK 482
           NGLLWEDSK LRLVVKADIHTHMREHLRRQK
Sbjct: 421 NGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451

[Close]

BLAST of Csor.00g144430 vs. ExPASy TrEMBL
Match: A0A6J1CK16 (RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=3673 GN=LOC111012326 PE=3 SV=1)

HSP 1 Score: 843 bits (2177), Expect = 2.00e-306
Identity = 433/491 (88.19%), Postives = 445/491 (90.63%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLD LYENAFICEAILRSLPPLAKKFVLQMLYI+APV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDNLYENAFICEAILRSLPPLAKKFVLQMLYIEAPVAA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVL DGVSKYKVA+DRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLI+GEVL
Sbjct: 61  KSMEEWVLSDGVSKYKVALDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIYGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDKE PRLTESGFQFLLMETNAQLWYIIREYISN+EER VDPADLISFLLELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE 240

Query: 272 ----------------------------------------AYDIDTLTEEQRYAIKDLAD 331
                                                   AYDIDTLTEEQRYAIKDLAD
Sbjct: 241 LQWLFGDADLLLRFVCLFRGALFFIVLSGFLYFWEFISFLAYDIDTLTEEQRYAIKDLAD 300

Query: 332 LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEIL 391
           LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSS+LHCEIL
Sbjct: 301 LGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSRLHCEIL 360

Query: 392 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFLQQNAHPRVAERIPSVPENVT 451
           RLFSRIEYQLPNLIVGAITKESLYNAFKNGITA+QIVTFLQQNAHPRVAERIPSVPENVT
Sbjct: 361 RLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVT 420

Query: 452 DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRLVVKADIH 482
           DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSK +RLVVKAD+H
Sbjct: 421 DQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNMRLVVKADVH 480

[Close]

BLAST of Csor.00g144430 vs. ExPASy TrEMBL
Match: A0A5A7UBE2 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003070 PE=3 SV=1)

HSP 1 Score: 823 bits (2125), Expect = 6.84e-297
Identity = 421/458 (91.92%), Postives = 430/458 (93.89%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
           KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
           AREPMPSNITVRLP+LE+LEAYALDQWECFLLQLINSGQA+KPSNISSSVMKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 212 QR-------------------------DKETPRLTESGFQFLLMETNAQLWYIIREYISN 271
           QR                         DKE PRLTESGFQFLLMETNAQLWYIIREYISN
Sbjct: 181 QRLKSCSMYSSLYFARYLIKCYVWYSRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240

Query: 272 AEERDVDPADLISFLLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWF 331
           AEER VDPADLISFLLELSFHVTGEAYDIDTL++EQRYAIKDLADLGLVKLQQGRK+SWF
Sbjct: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300

Query: 332 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 391
           IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV
Sbjct: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360

Query: 392 GAITKESLYNAFKNGITAQQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI 451
           GAITKESLYNAFKNGITA+QIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI
Sbjct: 361 GAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDI 420

Query: 452 TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKTLRL 464
           TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSK LRL
Sbjct: 421 TPAHFYDEFPSREVFEAACDYAREWNGLLWEDSKNLRL 458

[Close]

BLAST of Csor.00g144430 vs. TAIR 10
Match: AT4G17020.2 (transcription factor-related )

HSP 1 Score: 727.2 bits (1876), Expect = 8.4e-210
Identity = 354/450 (78.67%), Postives = 404/450 (89.78%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQ 482
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of Csor.00g144430 vs. TAIR 10
Match: AT4G17020.1 (transcription factor-related )

HSP 1 Score: 727.2 bits (1876), Expect = 8.4e-210
Identity = 354/450 (78.67%), Postives = 404/450 (89.78%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQ 482
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

[Close]

BLAST of Csor.00g144430 vs. TAIR 10
Match: AT4G17020.3 (transcription factor-related )

HSP 1 Score: 727.2 bits (1876), Expect = 8.4e-210
Identity = 354/450 (78.67%), Postives = 404/450 (89.78%), Query Frame = 0


Query: 32  MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 91
           MPQVKIIAKNFMDMVASLPA+KLD+LY N FICEAILRSLPPLAKK+VLQMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 92  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 151
             MEEWVL DG SK++VA+DRLIQLR+F E +DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 152 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 211
            REPM S+  ++LP+L+ELE YAL QWECFLLQLINSGQ +K + ISSS+MK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 212 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 271
           QRDK+ PRLTESGFQFLLM+TNAQLWYIIREYI NAEERDVDPADLISFLLELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 272 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 331
           AY+++TLTE Q   +KDLADLGLVKLQQGRKDSWFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 332 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 391
           +ETNFRMYAYS+SKL CEILRLF+RIEYQLPNLI  AITKESLYNAF NGIT+ QI+TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 392 QQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREW 451
           QQN+HPR A+R+PS+PENVTDQIRLWE+DL R+++T AHFYDEFPS++VFEAACD+AREW
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW 420

Query: 452 NGLLWEDSKTLRLVVKADIHTHMREHLRRQ 482
            GLLWEDSK +RLVVK+++H  MRE L  Q
Sbjct: 421 RGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450

The following BLAST results are available for this feature:

BLAST of Csor.00g144430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680U9	1.2e-208	78.67	General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thal...	[more]
Q92759	1.8e-68	33.77	General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=...	[more]
P60027	1.8e-68	33.77	General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 ...	[more]
O70422	5.3e-68	33.33	General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE...	[more]
Q6CLR2	5.2e-63	29.98	General transcription and DNA repair factor IIH subunit TFB2 OS=Kluyveromyces la...	[more]

BLAST of Csor.00g144430 vs. NCBI nr


Match Name	Identity	Description
KAG6604444.1	100.00	General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita...	[more]
XP_023543805.1	100.00	RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022977542.1	99.78	RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima]	[more]
XP_022925808.1	99.56	RNA polymerase II transcription factor B subunit 2 [Cucurbita moschata]	[more]
XP_004134713.1	96.67	general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Cucumis...	[more]

BLAST of Csor.00g144430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIT5	0.0	99.78	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EGA7	0.0	99.56	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662...	[more]
A0A0A0KK55	0.0	96.67	RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN...	[more]
A0A6J1CK16	2.00e-306	88.19	RNA polymerase II transcription factor B subunit 2 OS=Momordica charantia OX=367...	[more]
A0A5A7UBE2	6.84e-297	91.92	RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Csor.00g144430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17020.2	8.4e-210	78.67	transcription factor-related	[more]
AT4G17020.1	8.4e-210	78.67	transcription factor-related	[more]
AT4G17020.3	8.4e-210	78.67	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	TIGRFAM	TIGR00625	TIGR00625	coord: 44..482 e-value: 1.1E-105 score: 352.2
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PFAM	PF03849	Tfb2	coord: 45..397 e-value: 1.7E-110 score: 369.4
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PANTHER	PTHR13152	TFIIH, POLYPEPTIDE 4	coord: 36..480
IPR040662	Transcription factor Tfb2, C-terminal domain	PFAM	PF18307	Tfb2_C	coord: 412..479 e-value: 1.7E-22 score: 79.6
None	No IPR available	GENE3D	3.30.70.2610		coord: 408..482 e-value: 2.5E-26 score: 93.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g144430.m01	Csor.00g144430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0001671	ATPase activator activity
molecular_function	GO:0003690	double-stranded DNA binding