Csor.00g144370 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g144370
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 9393676 .. 9394975 (-)
RNA-Seq ExpressionCsor.00g144370
SyntenyCsor.00g144370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAGGTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCATATGAAGGTGTGTGTGTAATTTGTGTATGATGGGTGTTACAGGAATATAATGGTTGATTCATTTGTTGATTTAATTTTAATTTGTAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGTCATTTTCTTTTTCTTGTTTCTGACCATCAATATCAATCTTTTGGAGTTATGTACGAGTTCGGATTTTGTTTATCTGCTAGAGTAAATAGTTCGATGTCCCTGGAGTGGGTAGGGTTATCTCTACCTCATGTTTCGTTTCTCGTTCTCGTGAAAATTTTTATTTATTTTTATGAAAATTGAGATGGAGATCCTTCGGAATTCATTGATATGAAGATCCTCCATGTGAATTCCCGACCCGACCCTATTTAGCTCATGGAAAAAAGTCTCTTTCCGCTCCCTAAGATCCTCCATGTGAATTTTCGACCCGACCCTACTTAGCTCATGGAAAAAAGTCTCTTTACGCTTACTCTCCATTCCCCTAAGTTTAGAGCGTTTTAATTGAAATAAACATCTCTCGCTTCAAGTATATATATATATATATTTTTTTACATAATTTTTATTTAAATTGTTTATATGTTTTTATTTTTCTTGCGTTTTAAAAAATAGCGTAGAAGTTCGTTTACTTCCAAGCATAAATAAAAGGGTTATTTTATTTCTATTTACTTCCATAATAAATATTTTTTTAAAAAAATAAAATTTCCACATGTACGTGCAAAATTGGTACTTTTGAGAACAAAAGAGTAATAATAATAATGAAAAAAATTTATTAAAAAAAATAAAAATTGAGGTTTGTTTTGTTTTGTCCCACCCACCCATTAAATATTATTGGTGGGTGAAGAATTTGTTTATTTTTAGTGTATTGGGTAATCATTTATTTATTTATTTATATTTTAGCACTTAGCTTACGAAAAACTTAACCAAACTTAGTCGTTGAATTATGCAAATCAATCATAAGCTGTAATCTTAGATTAATTTCTTTGATTTTTTTTTTTGTTAAATAAAATAAAGATAACTTTTTTTATTTTATTTTATTTTATAGTTTCGTAATTATTCTGTTTATTTGTGCAGGGAAGCAAGGTGGGTGCATAA

mRNA sequence

ATGGAAATGAGGTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCATATGAAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGGAAGCAAGGTGGGTGCATAA

Coding sequence (CDS)

ATGGAAATGAGGTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCATATGAAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGGAAGCAAGGTGGGTGCATAA

Protein sequence

MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Homology
BLAST of Csor.00g144370 vs. NCBI nr
Match: KAG6604438.1 (hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (488), Expect = 7.26e-62
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89
          HSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Sbjct: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89

BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190 bits (482), Expect = 5.98e-61
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEM FTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89
          HSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Sbjct: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89

BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_023543089.1 (uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173 bits (438), Expect = 3.10e-54
Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEM F  TVFF+FLLLTPS CCCSS EGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFRITVFFLFLLLTPSLCCCSSNEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89
           SHGRPWIVHH HPLHPPPYPLKGSKVGA
Sbjct: 61 PSHGRPWIVHHHHPLHPPPYPLKGSKVGA 89

BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 172 bits (435), Expect = 8.64e-54
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEM FTTTVFF+FLLLTPSFCCCSS EGGSENGG+GSS +VYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGLGSS-QVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89
           SHGRPWIVHH HPLHPPPYPLKGSKVGA
Sbjct: 61 PSHGRPWIVHHHHPLHPPPYPLKGSKVGA 88

BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 112 bits (280), Expect = 5.49e-30
Identity = 65/102 (63.73%), Postives = 69/102 (67.65%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM-----GSSSEVYEIDYRGPETHSSH 60
          MEM    T+FF+FLL TPS    SS +GGSENG M      SSSEVYEIDYRGPETHSSH
Sbjct: 1  MEMISFMTMFFLFLLATPSL---SSPKGGSENGEMDFSSSSSSSEVYEIDYRGPETHSSH 60

Query: 61 ISPPHHSHGRPWIVHH--------RHPLHPPPYPLKGSKVGA 89
          ISPP HSHGRPWI HH        + P  P PYPLKGSK G 
Sbjct: 61 ISPPDHSHGRPWINHHDQHQLQPKQPPFKPDPYPLKGSKAGV 99

BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 2.90e-61
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEM FTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89
          HSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Sbjct: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89

BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 172 bits (435), Expect = 4.18e-54
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0

Query: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEM FTTTVFF+FLLLTPSFCCCSS EGGSENGG+GSS +VYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGLGSS-QVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89
           SHGRPWIVHH HPLHPPPYPLKGSKVGA
Sbjct: 61 PSHGRPWIVHHHHPLHPPPYPLKGSKVGA 88

BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.66e-25
Identity = 60/89 (67.42%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 8  TVFFIFLLL-TPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPP-HHSHGR 67
          T FF+FL+L TPS    SS +GGSENG M  SSEVYEIDYRGPETHSSH SPP HHSHGR
Sbjct: 10 TFFFLFLILATPSI---SSSKGGSENGAMEISSEVYEIDYRGPETHSSHFSPPDHHSHGR 69

Query: 68 PWIVHHR---HPLHPPPYPLKGS--KVGA 89
          PWI+HH+   H L+P P   K S  KVGA
Sbjct: 70 PWIIHHQPKLHSLNPSPNSRKVSCKKVGA 95

BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.24e-18
Identity = 52/84 (61.90%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 4  RFTTTVFFIFLLLTPSFCCCSSYEGGSE---NGGM-----GSSSE----VYEIDYRGPET 63
           F TT+FF+FLL TPS    +S EGGS    NGG+      SSS     VYEIDYRGPET
Sbjct: 5  NFMTTMFFLFLLATPSM---ASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGPET 64

Query: 64 HSSH-ISPPHHSHGR-PWIVHHRH 73
          HSSH ISPP HSHGR PWI+HH H
Sbjct: 65 HSSHHISPPDHSHGRRPWIIHHHH 85

BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.03e-16
Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 4  RFTTTVFFIFLLL-TPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSH-ISPPHH 63
           F TT+FF+FLL  TPS    SS    SEN   G    VYEIDYRGPETHSSH ISPP H
Sbjct: 5  NFMTTMFFLFLLAATPSLS--SSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPDH 64

Query: 64 SHGR-PWIVHH-RHPLHPPPYP 81
          SHGR PWI+HH RH L  P  P
Sbjct: 65 SHGRRPWIIHHHRHQLLQPKQP 84

BLAST of Csor.00g144370 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 3  MRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHS 62
          M+ T  + F+ + L  +  C   +  GSE     + SEVYEIDYRGPETH+S   PP   
Sbjct: 1  MKSTVMMIFLIIYLLIAVPC---FAKGSEQ----TDSEVYEIDYRGPETHNSR-PPPETM 60

Query: 63 HGRPWIVHH 72
          HG+P  +HH
Sbjct: 61 HGKPPYIHH 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6604438.17.26e-62100.00hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022925989.15.98e-6198.88uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothet... [more]
XP_023543089.13.10e-5491.01uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo][more]
XP_022979166.18.64e-5491.01uncharacterized protein LOC111478885 [Cucurbita maxima][more]
XP_038881428.15.49e-3063.73uncharacterized protein LOC120072958 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1EDR42.90e-6198.88uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
A0A6J1IQ064.18e-5491.01uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885... [more]
A0A6J1CPX61.66e-2567.42uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A5A7U1B98.24e-1861.90Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0KIB61.03e-1662.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G03120.15.4e-0643.48unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g144370.m01Csor.00g144370.m01mRNA