Csor.00g144370 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAGGTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCATATGAAGGTGTGTGTGTAATTTGTGTATGATGGGTGTTACAGGAATATAATGGTTGATTCATTTGTTGATTTAATTTTAATTTGTAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGTCATTTTCTTTTTCTTGTTTCTGACCATCAATATCAATCTTTTGGAGTTATGTACGAGTTCGGATTTTGTTTATCTGCTAGAGTAAATAGTTCGATGTCCCTGGAGTGGGTAGGGTTATCTCTACCTCATGTTTCGTTTCTCGTTCTCGTGAAAATTTTTATTTATTTTTATGAAAATTGAGATGGAGATCCTTCGGAATTCATTGATATGAAGATCCTCCATGTGAATTCCCGACCCGACCCTATTTAGCTCATGGAAAAAAGTCTCTTTCCGCTCCCTAAGATCCTCCATGTGAATTTTCGACCCGACCCTACTTAGCTCATGGAAAAAAGTCTCTTTACGCTTACTCTCCATTCCCCTAAGTTTAGAGCGTTTTAATTGAAATAAACATCTCTCGCTTCAAGTATATATATATATATATTTTTTTACATAATTTTTATTTAAATTGTTTATATGTTTTTATTTTTCTTGCGTTTTAAAAAATAGCGTAGAAGTTCGTTTACTTCCAAGCATAAATAAAAGGGTTATTTTATTTCTATTTACTTCCATAATAAATATTTTTTTAAAAAAATAAAATTTCCACATGTACGTGCAAAATTGGTACTTTTGAGAACAAAAGAGTAATAATAATAATGAAAAAAATTTATTAAAAAAAATAAAAATTGAGGTTTGTTTTGTTTTGTCCCACCCACCCATTAAATATTATTGGTGGGTGAAGAATTTGTTTATTTTTAGTGTATTGGGTAATCATTTATTTATTTATTTATATTTTAGCACTTAGCTTACGAAAAACTTAACCAAACTTAGTCGTTGAATTATGCAAATCAATCATAAGCTGTAATCTTAGATTAATTTCTTTGATTTTTTTTTTTGTTAAATAAAATAAAGATAACTTTTTTTATTTTATTTTATTTTATAGTTTCGTAATTATTCTGTTTATTTGTGCAGGGAAGCAAGGTGGGTGCATAA ATGGAAATGAGGTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCATATGAAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGGAAGCAAGGTGGGTGCATAA ATGGAAATGAGGTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCATATGAAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGGAAGCAAGGTGGGTGCATAA MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHSHGRPWIVHHRHPLHPPPYPLKGSKVGA Homology
BLAST of Csor.00g144370 vs. NCBI nr
Match: KAG6604438.1 (hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 192 bits (488), Expect = 7.26e-62 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 190 bits (482), Expect = 5.98e-61 Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_023543089.1 (uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 173 bits (438), Expect = 3.10e-54 Identity = 81/89 (91.01%), Postives = 82/89 (92.13%), Query Frame = 0
BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima]) HSP 1 Score: 172 bits (435), Expect = 8.64e-54 Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0
BLAST of Csor.00g144370 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida]) HSP 1 Score: 112 bits (280), Expect = 5.49e-30 Identity = 65/102 (63.73%), Postives = 69/102 (67.65%), Query Frame = 0
BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1) HSP 1 Score: 190 bits (482), Expect = 2.90e-61 Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0
BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1) HSP 1 Score: 172 bits (435), Expect = 4.18e-54 Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0
BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1) HSP 1 Score: 100 bits (248), Expect = 1.66e-25 Identity = 60/89 (67.42%), Postives = 66/89 (74.16%), Query Frame = 0
BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 8.24e-18 Identity = 52/84 (61.90%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of Csor.00g144370 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.03e-16 Identity = 51/82 (62.20%), Postives = 54/82 (65.85%), Query Frame = 0
BLAST of Csor.00g144370 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06 Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|