Csor.00g143360 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g143360
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 8865450 .. 8866832 (-)
RNA-Seq ExpressionCsor.00g143360
SyntenyCsor.00g143360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGATGATTCTTGCCCTCAATCGCGACGAAGAAGGCAAGAATTGAGGTCCGACCTAAGATGGATTCTTCTGATTCTTCTTTCTTTTGGCTACCTTTGGTGCATATGTAGGCTTATTAACAGAATCTGGTTCAGCTAAAAATTGGAACATTGATATTAATTATTATTCTTTAATCTTCGTCATAATCTTAGATCAGAGTTGTAATCCTATTTTTTGAGTTGGTTGGGTTAGCTCAATAAAAAAAATAAATCAACATGTGAACGGACTCTCGCTTTATTAAAAGTAAGGACCACTACGGGAGGTCAAACCAAGGACCTATGCAAGTCGGGGCTCGTTCCCGGTCAATATTGGATGGGCCGTGGCACTGACCTCTTTTTTTATTGATTCAATACAATTAGGGGAAAAGATTGTACATTTCCTACGAGATTTTTTTAGATTTTTTTAAATTGGGTAAAACAAAATAATATTGAATTTTTAAAAAATAATTTATTTATTATAAAAAGGAAGGCAACGGGATCATTAGTTCATAACACATATAAAGCAAGTAGAAATTGGCGTGAATCGCAAATTTTTCGGAGGCAAAGGCGTATCCAATTCCCTAATTTCTCTAATCTGTTGGATTGGTTGTTATTAAGGAAAAAGTTACTAAATTTCCCATTAACCGACGGATTTTGGGCATATCGAATCATCGTACGCCTTCACGGAGAGAGAGAGAGTAGCAGAGCAGCTGAGCAGACGACTCGCTACTTCTCGGCTGACGCCACCGCCATTTTCATCACCAACCATCTCTCTCTCTCTCTCTTCCGGTCACCGGCGCTGGGTTTTTCCTTCCTCCTCTCTACCACTTCTCCCTTTTCCGATTCTATCAGTGGGCTTGACGGAGGGGGGGTTTTAAGCAGCTTCCGCTATCAGTGGGTTAGTTTGTCAGTTCTTGGTATTTGCTGTCAATGTTCTTTGTTTACTGGTTTACATGATATAGAACTCGGAGGGGGAGGATTGAACATTTTGTGTAAGCTCGAACTCTTTATTGACGCCTTGTTCTTGATTATTTAGTGATCGTCTTTTTTTTGGTGTTTTATTTGTCTATATTGTTTTGCTGTTTGTTTGATTAGTTATTGGGTTTAAGGATTTCGGATTTCTATCCGTTGTGTAATGAATTTTGTTGCTGGGTACTGGGGATTGTGTAGCTGGTTTTTATCTAATATTTGTTCATGATTGGAATCGAATGAAATAGGGTTCGAGGAGCATTTTCTGAGGCAGGTTAGGCTGAAGAAGCTTCTTCTGACTTGGTACAGTGGGTTTTGTTTTAGAGCCATTCTAGGGCCTGTTGCTAAGTTAGTTTTGGAGGTATCAATGGTGGAGTTTTTTTACCAGTGGTGA

mRNA sequence

ATGCGCGATGATTCTTGCCCTCAATCGCGACGAAGAAGGCAAGAATTGAGGAAAAAGTTACTAAATTTCCCATTAACCGACGGATTTTGGGCATATCGAATCATCGTACGCCTTCACGGAGAGAGAGAGAGTAGCAGAGCAGCTGAGCAGACGACTCGCTACTTCTCGGCTGACGCCACCGCCATTTTCATCACCAACCATCTCTCTCTCTCTCTCTTCCGGTCACCGGCGCTGGGTTTTTCCTTCCTCCTCTCTACCACTTCTCCCTTTTCCGATTCTATCAGTGGGCTTGACGGAGGGGGGGTTTTAAGCAGCTTCCGCTATCAGTGGGTTAGTTTGTCAGTTCTTGGTATTTGCTGTCAATGTTCTTTGTTTACTGGTTTACATGATATAGAACTCGGAGGGGGAGGATTGAACATTTTGTGGTTCGAGGAGCATTTTCTGAGGCAGGTTAGGCTGAAGAAGCTTCTTCTGACTTGGTACAGTGGGTTTTGTTTTAGAGCCATTCTAGGGCCTGTTGCTAAGTTAGTTTTGGAGGTATCAATGGTGGAGTTTTTTTACCAGTGGTGA

Coding sequence (CDS)

ATGCGCGATGATTCTTGCCCTCAATCGCGACGAAGAAGGCAAGAATTGAGGAAAAAGTTACTAAATTTCCCATTAACCGACGGATTTTGGGCATATCGAATCATCGTACGCCTTCACGGAGAGAGAGAGAGTAGCAGAGCAGCTGAGCAGACGACTCGCTACTTCTCGGCTGACGCCACCGCCATTTTCATCACCAACCATCTCTCTCTCTCTCTCTTCCGGTCACCGGCGCTGGGTTTTTCCTTCCTCCTCTCTACCACTTCTCCCTTTTCCGATTCTATCAGTGGGCTTGACGGAGGGGGGGTTTTAAGCAGCTTCCGCTATCAGTGGGTTAGTTTGTCAGTTCTTGGTATTTGCTGTCAATGTTCTTTGTTTACTGGTTTACATGATATAGAACTCGGAGGGGGAGGATTGAACATTTTGTGGTTCGAGGAGCATTTTCTGAGGCAGGTTAGGCTGAAGAAGCTTCTTCTGACTTGGTACAGTGGGTTTTGTTTTAGAGCCATTCTAGGGCCTGTTGCTAAGTTAGTTTTGGAGGTATCAATGGTGGAGTTTTTTTACCAGTGGTGA

Protein sequence

MRDDSCPQSRRRRQELRKKLLNFPLTDGFWAYRIIVRLHGERESSRAAEQTTRYFSADATAIFITNHLSLSLFRSPALGFSFLLSTTSPFSDSISGLDGGGVLSSFRYQWVSLSVLGICCQCSLFTGLHDIELGGGGLNILWFEEHFLRQVRLKKLLLTWYSGFCFRAILGPVAKLVLEVSMVEFFYQW
Homology
[Close]
BLAST of Csor.00g143360 vs. NCBI nr
Match: KAG6604337.1 (hypothetical protein SDJN03_04946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 383 bits (984), Expect = 2.85e-134
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 

Query: 1   MRDDSCPQSRRRRQELRKKLLNFPLTDGFWAYRIIVRLHGERESSRAAEQTTRYFSADAT 60
           MRDDSCPQSRRRRQELRKKLLNFPLTDGFWAYRIIVRLHGERESSRAAEQTTRYFSADAT
Sbjct: 1   MRDDSCPQSRRRRQELRKKLLNFPLTDGFWAYRIIVRLHGERESSRAAEQTTRYFSADAT 60

Query: 61  AIFITNHLSLSLFRSPALGFSFLLSTTSPFSDSISGLDGGGVLSSFRYQWVSLSVLGICC 120
           AIFITNHLSLSLFRSPALGFSFLLSTTSPFSDSISGLDGGGVLSSFRYQWVSLSVLGICC
Sbjct: 61  AIFITNHLSLSLFRSPALGFSFLLSTTSPFSDSISGLDGGGVLSSFRYQWVSLSVLGICC 120

Query: 121 QCSLFTGLHDIELGGGGLNILWFEEHFLRQVRLKKLLLTWYSGFCFRAILGPVAKLVLEV 180
           QCSLFTGLHDIELGGGGLNILWFEEHFLRQVRLKKLLLTWYSGFCFRAILGPVAKLVLEV
Sbjct: 121 QCSLFTGLHDIELGGGGLNILWFEEHFLRQVRLKKLLLTWYSGFCFRAILGPVAKLVLEV 180

Query: 181 SMVEFFYQW 189
           SMVEFFYQW
Sbjct: 181 SMVEFFYQW 189

[Close]
BLAST of Csor.00g143360 vs. NCBI nr
Match: KAG7034488.1 (hypothetical protein SDJN02_04218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 4.23e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 41 ERESSRAAEQTTRYFSADATAIFITNHLSLSLFRSPAL 78
          ERESSRAAEQTTRYFSADATAIFITNHLSLSLFRSPAL
Sbjct: 25 ERESSRAAEQTTRYFSADATAIFITNHLSLSLFRSPAL 62

The following BLAST results are available for this feature:
BLAST of Csor.00g143360 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g143360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604337.12.85e-134100.00hypothetical protein SDJN03_04946, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034488.14.23e-14100.00hypothetical protein SDJN02_04218, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g143360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g143360 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007492LytTR DNA-binding domainPROSITEPS50930HTH_LYTTRcoord: 1..22
score: 9.01403

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g143360.m02Csor.00g143360.m02mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding