Csor.00g143220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codonsinglepolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAATCCGCCGCACAGAAAACCTACCCACCGCCGTCGCCGTCGCCATCACCTGCTAATCTCTGCCGCAGAAGCTTGATTCCCTCCTCCGCCATGCCTCCGCAAAACGGCACCCTTTCCCCTGCTCCACCGCCGTCCCCGATTGACTTGAGGCTCCTCTCCAAGTCATCTTCTCAATCCTACACCTCCCTCAAGGACATCCTTCCCTCCTCCGCCGTCGCCGTCAACTCTCCCACCGCCGCTTCCCCCGCTAACTCCGGCTACGAAATCTTGATCCGCAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCGTCCTATTCCGCTGGCCCCAATCTTTTCCACGGTTTATGGCTCCGATTCTCTACCGGAAATCCAATCTCCAGTTGTCTCGGATTCATCAGAGGCTGTATCATTCCGTCAATAATCCGAGTCTTCCGGTCCTGCATTTGCCTATGA ATGGCCAAATCCGCCGCACAGAAAACCTACCCACCGCCGTCGCCGTCGCCATCACCTGCTAATCTCTGCCGCAGAAGCTTGATTCCCTCCTCCGCCATGCCTCCGCAAAACGGCACCCTTTCCCCTGCTCCACCGCCGTCCCCGATTGACTTGAGGCTCCTCTCCAAGTCATCTTCTCAATCCTACACCTCCCTCAAGGACATCCTTCCCTCCTCCGCCGTCGCCGTCAACTCTCCCACCGCCGCTTCCCCCGCTAACTCCGGCTACGAAATCTTGATCCGCAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCGTCCTATTCCGCTGGCCCCAATCTTTTCCACGGTTTATGGCTCCGATTCTCTACCGGAAATCCAATCTCCAGTTGTCTCGGATTCATCAGAGGCTGTATCATTCCGTCAATAATCCGAGTCTTCCGGTCCTGCATTTGCCTATGA ATGGCCAAATCCGCCGCACAGAAAACCTACCCACCGCCGTCGCCGTCGCCATCACCTGCTAATCTCTGCCGCAGAAGCTTGATTCCCTCCTCCGCCATGCCTCCGCAAAACGGCACCCTTTCCCCTGCTCCACCGCCGTCCCCGATTGACTTGAGGCTCCTCTCCAAGTCATCTTCTCAATCCTACACCTCCCTCAAGGACATCCTTCCCTCCTCCGCCGTCGCCGTCAACTCTCCCACCGCCGCTTCCCCCGCTAACTCCGGCTACGAAATCTTGATCCGCAACCGCCTCGTTAAGCAGGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCGTCCTATTCCGCTGGCCCCAATCTTTTCCACGGTTTATGGCTCCGATTCTCTACCGGAAATCCAATCTCCAGTTGTCTCGGATTCATCAGAGGCTGTATCATTCCGTCAATAATCCGAGTCTTCCGGTCCTGCATTTGCCTATGA MAKSAAQKTYPPPSPSPSPANLCRRSLIPSSAMPPQNGTLSPAPPPSPIDLRLLSKSSSQSYTSLKDILPSSAVAVNSPTAASPANSGYEILIRNRLVKQAAWAYLQPMSASSYSAGPNLFHGLWLRFSTGNPISSCLGFIRGCIIPSIIRVFRSCICL Homology
BLAST of Csor.00g143220 vs. NCBI nr
Match: XP_022926106.1 (uncharacterized protein LOC111433319 [Cucurbita moschata] >KAG6604323.1 hypothetical protein SDJN03_04932, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034475.1 hypothetical protein SDJN02_04204, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 308 bits (788), Expect = 2.27e-105 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of Csor.00g143220 vs. NCBI nr
Match: XP_022979075.1 (uncharacterized protein LOC111478820 [Cucurbita maxima]) HSP 1 Score: 302 bits (774), Expect = 3.09e-103 Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of Csor.00g143220 vs. NCBI nr
Match: XP_023544532.1 (uncharacterized protein LOC111804081 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 301 bits (771), Expect = 9.51e-103 Identity = 158/161 (98.14%), Postives = 158/161 (98.14%), Query Frame = 0
BLAST of Csor.00g143220 vs. NCBI nr
Match: XP_038883302.1 (uncharacterized protein LOC120074291 [Benincasa hispida]) HSP 1 Score: 238 bits (607), Expect = 9.42e-78 Identity = 133/163 (81.60%), Postives = 139/163 (85.28%), Query Frame = 0
BLAST of Csor.00g143220 vs. NCBI nr
Match: XP_008462609.1 (PREDICTED: uncharacterized protein LOC103500927 [Cucumis melo] >KAA0025225.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa]) HSP 1 Score: 219 bits (557), Expect = 3.28e-70 Identity = 125/161 (77.64%), Postives = 130/161 (80.75%), Query Frame = 0
BLAST of Csor.00g143220 vs. ExPASy TrEMBL
Match: A0A6J1EDY2 (uncharacterized protein LOC111433319 OS=Cucurbita moschata OX=3662 GN=LOC111433319 PE=4 SV=1) HSP 1 Score: 308 bits (788), Expect = 1.10e-105 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
BLAST of Csor.00g143220 vs. ExPASy TrEMBL
Match: A0A6J1IS66 (uncharacterized protein LOC111478820 OS=Cucurbita maxima OX=3661 GN=LOC111478820 PE=4 SV=1) HSP 1 Score: 302 bits (774), Expect = 1.50e-103 Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0
BLAST of Csor.00g143220 vs. ExPASy TrEMBL
Match: A0A5A7SL81 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00720 PE=4 SV=1) HSP 1 Score: 219 bits (557), Expect = 1.59e-70 Identity = 125/161 (77.64%), Postives = 130/161 (80.75%), Query Frame = 0
BLAST of Csor.00g143220 vs. ExPASy TrEMBL
Match: A0A5D3C6C7 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G001710 PE=4 SV=1) HSP 1 Score: 219 bits (557), Expect = 1.59e-70 Identity = 125/161 (77.64%), Postives = 130/161 (80.75%), Query Frame = 0
BLAST of Csor.00g143220 vs. ExPASy TrEMBL
Match: A0A1S3CHC6 (uncharacterized protein LOC103500927 OS=Cucumis melo OX=3656 GN=LOC103500927 PE=4 SV=1) HSP 1 Score: 219 bits (557), Expect = 1.59e-70 Identity = 125/161 (77.64%), Postives = 130/161 (80.75%), Query Frame = 0
BLAST of Csor.00g143220 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09 Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 0
BLAST of Csor.00g143220 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-09 Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 0
BLAST of Csor.00g143220 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.9 bits (141), Expect = 4.2e-09 Identity = 55/140 (39.29%), Postives = 76/140 (54.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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