Csor.00g142220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g142220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 13105579 .. 13110036 (-)
RNA-Seq ExpressionCsor.00g142220
SyntenyCsor.00g142220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCTGCCCTTTCTTCGTGATATTTAGCTCAGATAATTCAATCGTCAACCGATCTTACACCTCTCCTTCTCCATCTTCCGGCGGCCATCACTACTGCTTAGACCATATCAAATTTCCGGTCATATTACTGACGATAAGGCCAACCGGACCGCCAAATTTTAACCAGCAGCGCCGGAGAGTGTCGTTTCCATTCCAACAATTCCTCCGCCGCTTATGGCCTCATCCTTCAATCCGAAACCAAGCTAGGTCTCACACCTGCAGTTCCGTTGCCACGATCCCCTCCGGTCACAAAGGTTAGCTTGTTGTGAACTTAACTTCATACTCAGCATGTTTTGTTTCGTTGATTACTATTTGAGCGTCAGGGGTATTTCTGACCTGTTCGATGTGTTTAAAATCGGGCCTATGCCCATAGACGAAGGTAGAACAGAAAGCTGATAAGAAAAAGGAATATTGAACATGCTACGTTATGGCCAGTGCGAGGAGGCTGTGGAAAAACAGGCAGACCCACGCTTGTGTCTTGACACACGAAAGTGAGACTGCCTTGTAGGAATTTGAAATTGATTAGTTATGTTTGTGATTAATATTATTTTTAAGTATCATTAAGACCACAGTGGTATTCGCGGGTTTAGGGCTTTCGTTCTGCTTGGGACAGGAAGATGACTAAGAGTCCCTGATTCCAAATGTAGCTTACCAGTTTAATGCGGGAAAGGAATATGTGAGCCACCGTGTAGGCGAATGACCTCATCTTATCATACAGCCATGTTATCTGAAGTTTCTCGTCGTCCTAAAGGTTCACATAGTTGGTGGTCAATTGCAGAGCGCTCAGGGGATAAATTGTATATAAATGCTGTTGTATTTTTCGGGTAACTGAATGGAAAGCTGAAAGCCAAAAAACACAGGAAAGGTTATATAATCATATTAACTATATGGTTTATGAACTGTGACGACACATCAGCATCCAAAGAGGCATATAAAAAATATCCTAATTTTCTATGAGGGAGATGATTGAAGCGGAGCCCTTGATGGTGTATCTTAGGTTATTTAAGGTAAATGCCAATTATTCCTTGCTAAGTTGCACTTAATTGATGACTTCACATGCCCAATCATTTGATATTGTTACCCTTAACCTGATAGTTTCCTTTTTCTCAACTAGATAATTCTAGAAGGATAATAGAATGAATTCTGGATGTGTGGGGCACACGCGTTCCGGGGATTGGCAAATTCGTATGAACCACGTGCCAATACACACCCGCTCAGAATCTCCCTTTTTAGTGACTACGTTTCTCACGCTGTTGTCTTCATGAAAACCACCGCTCGTAACTCGTTGGTATCATTATACATCACCTTTATAGCAATGGTTAGGAGACGGACTTACTATAAATTTGGCAATGACATTCTTAGTGTGATAAGAGTGTTCAACGGTTTAATTTACAAATATAGTGTAGGGGATAAGTTTAATTTTGACTTGTAATCTTCCTTCGACCCAAATTCAATAGTGCCACACGGTGTGTGTGTGTATGATTGATATCCCTAGTAGACAAAGAAAGTCCAGCTATATTAATATTAGAGTCAAGACCCTTAACGCAGAGTCAAAACCCCTACTAGTTGTAGGACACAGGTTGGTATTGTAGTACCTTGTACTTTCTCAGGAGGTCTTTGATTACTAGCACTTCATCTCTTTTAGTTAGTTTATATTTTATTTTATGGGAGAAATCGTATTCTTGTTACTGCACTTGGACTATGATAAGCTAAAACTAGCAATTCGAGTTGTCTAATTTTTGGTGATTAACTATATTGATCTAGAGATACCTTATCCTTACTAGTTGGTTAATGCAGAAGTTGGGACGTATTGGTATCGGAATCTTGTTAGGAACATCGTTTTCAAGGAACGCCATGAAATATGATGCACAAGAGGTTGTCCTTTTATTTACTCTAATTTTAAAAAGAACTCTGTATCAATGAATTATTTTTTCCTTCTAATTGTGAAGATTGGCTTCATTAGCACTCTAGAATTAATGACATTAACCACATATATCATGTATAGTATGCAATTAATAGAATACTATCGCCACTCTATCTCTTACTCGGTATAGGAACTATTCCAGATAAGGCAGTGAGCATGACTTATCCTATCAGAAGATACAAGATGGATTCTATAACCAAAGTATCTCAAATATTACGTATGAAAGTATTAGCAGAGATATTGATTAAGAGGATTAACTTTTCAGATCTATTCTCATAACTCCATTAGAACAGAGCTCATAAGATTGTTGTGTTGGCCATAACAAAATCATTCCTTTTATTAAGATTTGTCTACGATGAGACCTGTCTTAGATAACATGCAGGTGCTCACCTGATTGACCTATCCTGGGGCATTTAACATGAATACAGGACCATTGCACGGGAGCTATTGCAGCGATGCAAAGGGTAACTGAACTTCACTTTATAGATCCTTCTAACTTTAGTTATGTTCTGAGTGAAATGTCTGAATGTTGTGCACACATGGTGTAAAATAGTACAAAAGAGGCTTTTGGACACTCCAAAATATGTCATGAAGTACAGAGCATGTTGGGACACTGAGAGAATGTATTTCTATCGTAATAAGGTCATATTTAATCCAAGGAAAAAGCCTTGTTGACGTAGTCCCGTCCCCCTGAGTCAAGCGGCCAGGCTCCAGAAAGCCATAGTTGCCGTATGAAAAAGAGGGAAGAAGAGAAAATTTTAGAGCTTGTGCAGGTTAGCACGTGGGGGGACGGTAATGGGTTGGGACAGCGAAGTCATAGGAAGTCGTTTCTTGTTGGTTAGAGTAGTGGCGTGTATAGATTGTGGTAGATTGAAATATTGGTGTGTTTGTGGTAGGGCGTTGAAATTTAGTTTTGTATGAGAATCATAAGGGAGAGGTTTGTGTATTTTTAGTGTTGCGTATTGAGAATACTATGGTTGGGGATTTTCACGGACATTTGGTTTGATGTGTTTATGCAGGGCGCAGATAATCAGGTATTTACGAGTCTCCAGATTTTAGTCGTGTCTGTTTTATGCACAAACAAAGCAAAATTAAAGAAAAAATATATCAATAATGATAGGAGTGGTTGTGTAACTAAATTTTGTTGACAATAATAGATTACTTAGTTTATAAAGCACCTATTATCAGAAATAATTGTCTACCTAAGATTTATGGTCGCAGTCTGCTGACTTTTTTTAATTAAAAATTGATTGTTTAAACATCCTAAAACTCGAAGAATGTATTAAATGGTGTACAAAAACATATGGAAGAACATTTTCTTTACGTCTTGCAAACAGAATATCTTACACAAAAATTTTTAATGATGCTTGTGTCAGTGTATGTGGCAACATGTTCACAGCTCGAGGACCGTCGGAGCTGTTATGTAGCTGGGGCCACTCTACCCTTGTTGGACGGTAAGGCATGCTAAAGTTCCAGCTTTGATTCTCTTGTTATCATGCAAATGAAAGTCATATGTATTCGAGGTTCGATTGGTTCCGATCTCAACTCTATATCAGGACGAATTGGCCTTTGTTTTAGCTTTATCATGGATTTTTTCACAATTCAGTCTAGGGGCGGTAGGCAGTGCTAGTTTGGTGAAGTGTTAGCTTACAACAGAACATGGATGAAGGCAATAATCATCATGCGGTTAGATTGTATTATTCGACCTTATTGAGCTTTAGAAGTGAGCCACTCTTGCAGTCCTTTTTAAAAAGTGTTCTTCCATCAGACAGTATCTCAACTCTCCTCTCTCTCATTGATAGTATGCACACAATGCCGTCGATACTATTGCAGGACTGACTAACCCTTAGAGCATTGTCTGAAGCAAAAAGCGTGGAGTATCTTTACCAGTGGTGGATGTGTTGAGGGGTAGGCTGATAATCCGAATCGAATTTGGTGCACAATTGACTTTGCTTTGGATACGCTCTTTCCATGCTTTAAGCATTTTCATCCAAGTTAGAAACTAACACATTAACTTTAGCCGCTAACTAACTGCACCCTTGATGGCAGCTTCTTCCAGACTCACCACAGTTGTGTGCTAGTTTTGTGCTGCGCTGCCTATAGGTGGGCAATGACGAGTCGTCAGCGCTCCGTCAGTTTTTAAAATGAGTTACAAATCTTAGGATAATTTAGGCAATGTTCGCAATCTCTGTATAGCTTGTGTTTACCTGATATCTGTCGTTGTTAAGGCTTCAGCAGATTATGGCACATTAACTTGTCATGGCTTAATATCAATTGAGTATAATTTTTCTACAGGTCGCCATCACGATTACCTTTTACCTGTTCTTAATTAAGGCAAAATTCGGAGGAGTTCAGCACAGTGGGAAACAAAAGATCTGTTTATCTTGCCAGAACAGACAGATACCGGCCATCATCAACCGGCCGCAAAAAACCACAAAAGGCCTTGGACATCCAAATTCCATACGCCCAGATTCAAAATCTAAGATGTGA

mRNA sequence

ATGAAATCCTGCCCTTTCTTCGTGATATTTAGCTCAGATAATTCAATCGTCAACCGATCTTACACCTCTCCTTCTCCATCTTCCGGCGGCCATCACTACTGCTTAGACCATATCAAATTTCCGGTCATATTACTGACGATAAGGCCAACCGGACCGCCAAATTTTAACCAGCAGCGCCGGAGAGTGTCGTTTCCATTCCAACAATTCCTCCGCCGCTTATGGCCTCATCCTTCAATCCGAAACCAAGCTAGGTCTCACACCTGCAGTTCCGTTGCCACGATCCCCTCCGGTCACAAAGGACCATTGCACGGGAGCTATTGCAGCGATGCAAAGGTACAAAAGAGGCTTTTGGACACTCCAAAATATGTCATGAAGTACAGAGCATGTTGGGACACTGAGAGAATGTATTTCTATCGTAATAAGGGCGCAGATAATCAGGTCGCCATCACGATTACCTTTTACCTGTTCTTAATTAAGGCAAAATTCGGAGGAGTTCAGCACAGTGGGAAACAAAAGATCTGTTTATCTTGCCAGAACAGACAGATACCGGCCATCATCAACCGGCCGCAAAAAACCACAAAAGGCCTTGGACATCCAAATTCCATACGCCCAGATTCAAAATCTAAGATGTGA

Coding sequence (CDS)

ATGAAATCCTGCCCTTTCTTCGTGATATTTAGCTCAGATAATTCAATCGTCAACCGATCTTACACCTCTCCTTCTCCATCTTCCGGCGGCCATCACTACTGCTTAGACCATATCAAATTTCCGGTCATATTACTGACGATAAGGCCAACCGGACCGCCAAATTTTAACCAGCAGCGCCGGAGAGTGTCGTTTCCATTCCAACAATTCCTCCGCCGCTTATGGCCTCATCCTTCAATCCGAAACCAAGCTAGGTCTCACACCTGCAGTTCCGTTGCCACGATCCCCTCCGGTCACAAAGGACCATTGCACGGGAGCTATTGCAGCGATGCAAAGGTACAAAAGAGGCTTTTGGACACTCCAAAATATGTCATGAAGTACAGAGCATGTTGGGACACTGAGAGAATGTATTTCTATCGTAATAAGGGCGCAGATAATCAGGTCGCCATCACGATTACCTTTTACCTGTTCTTAATTAAGGCAAAATTCGGAGGAGTTCAGCACAGTGGGAAACAAAAGATCTGTTTATCTTGCCAGAACAGACAGATACCGGCCATCATCAACCGGCCGCAAAAAACCACAAAAGGCCTTGGACATCCAAATTCCATACGCCCAGATTCAAAATCTAAGATGTGA

Protein sequence

MKSCPFFVIFSSDNSIVNRSYTSPSPSSGGHHYCLDHIKFPVILLTIRPTGPPNFNQQRRRVSFPFQQFLRRLWPHPSIRNQARSHTCSSVATIPSGHKGPLHGSYCSDAKVQKRLLDTPKYVMKYRACWDTERMYFYRNKGADNQVAITITFYLFLIKAKFGGVQHSGKQKICLSCQNRQIPAIINRPQKTTKGLGHPNSIRPDSKSKM
Homology
[Close]
BLAST of Csor.00g142220 vs. NCBI nr
Match: KAG6608353.1 (hypothetical protein SDJN03_01695, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 446 bits (1147), Expect = 1.98e-158
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 1   MKSCPFFVIFSSDNSIVNRSYTSPSPSSGGHHYCLDHIKFPVILLTIRPTGPPNFNQQRR 60
           MKSCPFFVIFSSDNSIVNRSYTSPSPSSGGHHYCLDHIKFPVILLTIRPTGPPNFNQQRR
Sbjct: 1   MKSCPFFVIFSSDNSIVNRSYTSPSPSSGGHHYCLDHIKFPVILLTIRPTGPPNFNQQRR 60

Query: 61  RVSFPFQQFLRRLWPHPSIRNQARSHTCSSVATIPSGHKGPLHGSYCSDAKVQKRLLDTP 120
           RVSFPFQQFLRRLWPHPSIRNQARSHTCSSVATIPSGHKGPLHGSYCSDAKVQKRLLDTP
Sbjct: 61  RVSFPFQQFLRRLWPHPSIRNQARSHTCSSVATIPSGHKGPLHGSYCSDAKVQKRLLDTP 120

Query: 121 KYVMKYRACWDTERMYFYRNKGADNQVAITITFYLFLIKAKFGGVQHSGKQKICLSCQNR 180
           KYVMKYRACWDTERMYFYRNKGADNQVAITITFYLFLIKAKFGGVQHSGKQKICLSCQNR
Sbjct: 121 KYVMKYRACWDTERMYFYRNKGADNQVAITITFYLFLIKAKFGGVQHSGKQKICLSCQNR 180

Query: 181 QIPAIINRPQKTTKGLGHPNSIRPDSKSKM 210
           QIPAIINRPQKTTKGLGHPNSIRPDSKSKM
Sbjct: 181 QIPAIINRPQKTTKGLGHPNSIRPDSKSKM 210

The following BLAST results are available for this feature:
BLAST of Csor.00g142220 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g142220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608353.11.98e-158100.00hypothetical protein SDJN03_01695, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g142220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g142220 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g142220.m01Csor.00g142220.m01mRNA