Csor.00g142190 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g142190
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 13115457 .. 13116087 (+)
RNA-Seq Expression	Csor.00g142190
Synteny	Csor.00g142190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCATTGTTACTCCAAGACTGGACCGATAGTGAACGACGCATACCAATTGGCGGACTTATTTGCGGGTAGGCGCCTGAGCACAGCAGGTAAGCGATTTTTCAATTTAGTAGAGGTTCCTCCGCCCATCCATCTTCCCAGAATCCAACATTCCCCAACTACTAATAGGAACGATTAACAAGTGAAATCCGAATGTTGCACAGTCGATTATAATGTTCTTATTAGCCGAACTTTTTTGTACAAGAGAAATGGAAAGGGCAAAAAGCATGATTATTTCCTTATTGTTGAGGCATGAACACTACACTGTTTCATGCCATATGTCAATATGATCTTGAAATAACGTTTCACCTAAAAAAAAGATTAAAGAAAAGGGCATTGTACATTATCTTTCCTTTTAGGAATATATCCCAGCCAATGTCATCCAGCTCTAATGCGATCCGCTCAAGCGATCTTGGTTCTTAGGCAGTATAGCGCGTTTGGAGAAACTCATAGGTCGTGCTCATGGTGGTGGCCGACATAGCGGCATTGACGCCCACCGAGACCCCGAGCCCTCTGTAACAGGCATTCAGCCCACCTTCCCTTCATCAGTTTTCTTACGGTCTGCAATGCCGTTAAGGGTTCGTCTTTGA

mRNA sequence

ATGGAGCATTGTTACTCCAAGACTGGACCGATAGTGAACGACGCATACCAATTGGCGGACTTATTTGCGGGTAGGCGCCTGAGCACAGCAGGCAGTATAGCGCGTTTGGAGAAACTCATAGGTCGTGCTCATGGTGGTGGCCGACATAGCGGCATTGACGCCCACCGAGACCCCGAGCCCTCTGTAACAGGCATTCAGCCCACCTTCCCTTCATCAGTTTTCTTACGGTCTGCAATGCCGTTAAGGGTTCGTCTTTGA

Coding sequence (CDS)

ATGGAGCATTGTTACTCCAAGACTGGACCGATAGTGAACGACGCATACCAATTGGCGGACTTATTTGCGGGTAGGCGCCTGAGCACAGCAGGCAGTATAGCGCGTTTGGAGAAACTCATAGGTCGTGCTCATGGTGGTGGCCGACATAGCGGCATTGACGCCCACCGAGACCCCGAGCCCTCTGTAACAGGCATTCAGCCCACCTTCCCTTCATCAGTTTTCTTACGGTCTGCAATGCCGTTAAGGGTTCGTCTTTGA

Protein sequence

MEHCYSKTGPIVNDAYQLADLFAGRRLSTAGSIARLEKLIGRAHGGGRHSGIDAHRDPEPSVTGIQPTFPSSVFLRSAMPLRVRL

Homology

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BLAST of Csor.00g142190 vs. NCBI nr
Match: KAG6608356.1 (hypothetical protein SDJN03_01698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (437), Expect = 3.30e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MEHCYSKTGPIVNDAYQLADLFAGRRLSTAGSIARLEKLIGRAHGGGRHSGIDAHRDPEP 60
          MEHCYSKTGPIVNDAYQLADLFAGRRLSTAGSIARLEKLIGRAHGGGRHSGIDAHRDPEP
Sbjct: 1  MEHCYSKTGPIVNDAYQLADLFAGRRLSTAGSIARLEKLIGRAHGGGRHSGIDAHRDPEP 60

Query: 61 SVTGIQPTFPSSVFLRSAMPLRVRL 85
          SVTGIQPTFPSSVFLRSAMPLRVRL
Sbjct: 61 SVTGIQPTFPSSVFLRSAMPLRVRL 85

The following BLAST results are available for this feature:

BLAST of Csor.00g142190 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g142190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608356.1	3.30e-54	100.00	hypothetical protein SDJN03_01698, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g142190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g142190 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g142190.m01	Csor.00g142190.m01	mRNA