Csor.00g142030 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglestart_codonpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGGCCTACGACGGTGCTCCAACGACCTCCTCCTCCTCGACCTATCTCCGCCTTCCTCCGTCCCCTCCACCGCCTCCCTTTCCATCGACGTTGCCGAGTCCGCCGAGACACGAATCCGTCGCCTCATCTCCGAACATCCAGTCATCATCTTCAGCCGCACTTCTTGTTGCATGTGCCACGTCATGAAGAAGCTTCTCGCCTCTATCGGCGTTCACCCTACCGTCATCGAATTAGACGACCACGAGATCGACGCTCTCGCCTCCTTCTCCTCCACCACCCCCGCAGCCGCTCCTGCCGTCTTCATCGGTGGCTCCTACGTCGGCGGCCTTGAATCCCTCGTCGCACTCCACCTCAGCGGCCACCTCGTACCTAAGCTTGTCGAGGTCGGCGCTCTCTGGGTATGA ATGCAAGGCCTACGACGGTGCTCCAACGACCTCCTCCTCCTCGACCTATCTCCGCCTTCCTCCGTCCCCTCCACCGCCTCCCTTTCCATCGACGTTGCCGAGTCCGCCGAGACACGAATCCGTCGCCTCATCTCCGAACATCCAGTCATCATCTTCAGCCGCACTTCTTGTTGCATGTGCCACGTCATGAAGAAGCTTCTCGCCTCTATCGGCGTTCACCCTACCGTCATCGAATTAGACGACCACGAGATCGACGCTCTCGCCTCCTTCTCCTCCACCACCCCCGCAGCCGCTCCTGCCGTCTTCATCGGTGGCTCCTACGTCGGCGGCCTTGAATCCCTCGTCGCACTCCACCTCAGCGGCCACCTCGTACCTAAGCTTGTCGAGGTCGGCGCTCTCTGGGTATGA ATGCAAGGCCTACGACGGTGCTCCAACGACCTCCTCCTCCTCGACCTATCTCCGCCTTCCTCCGTCCCCTCCACCGCCTCCCTTTCCATCGACGTTGCCGAGTCCGCCGAGACACGAATCCGTCGCCTCATCTCCGAACATCCAGTCATCATCTTCAGCCGCACTTCTTGTTGCATGTGCCACGTCATGAAGAAGCTTCTCGCCTCTATCGGCGTTCACCCTACCGTCATCGAATTAGACGACCACGAGATCGACGCTCTCGCCTCCTTCTCCTCCACCACCCCCGCAGCCGCTCCTGCCGTCTTCATCGGTGGCTCCTACGTCGGCGGCCTTGAATCCCTCGTCGCACTCCACCTCAGCGGCCACCTCGTACCTAAGCTTGTCGAGGTCGGCGCTCTCTGGGTATGA MQGLRRCSNDLLLLDLSPPSSVPSTASLSIDVAESAETRIRRLISEHPVIIFSRTSCCMCHVMKKLLASIGVHPTVIELDDHEIDALASFSSTTPAAAPAVFIGGSYVGGLESLVALHLSGHLVPKLVEVGALWV Homology
BLAST of Csor.00g142030 vs. ExPASy Swiss-Prot
Match: Q8L9S3 (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2) HSP 1 Score: 172.9 bits (437), Expect = 2.4e-42 Identity = 96/140 (68.57%), Postives = 108/140 (77.14%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy Swiss-Prot
Match: Q29PZ1 (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 6.1e-38 Identity = 89/150 (59.33%), Postives = 109/150 (72.67%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy Swiss-Prot
Match: Q0DK35 (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24 Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy Swiss-Prot
Match: Q0JDM4 (Glutaredoxin-C5 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC5 PE=2 SV=2) HSP 1 Score: 101.3 bits (251), Expect = 8.9e-21 Identity = 52/122 (42.62%), Postives = 72/122 (59.02%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy Swiss-Prot
Match: Q5SMY5 (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 2.0e-20 Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 0
BLAST of Csor.00g142030 vs. NCBI nr
Match: KAG6608371.1 (Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 266 bits (679), Expect = 1.57e-89 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Csor.00g142030 vs. NCBI nr
Match: XP_022941086.1 (glutaredoxin-C6-like [Cucurbita moschata]) HSP 1 Score: 265 bits (676), Expect = 4.51e-89 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Csor.00g142030 vs. NCBI nr
Match: XP_023524422.1 (glutaredoxin-C6 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 264 bits (675), Expect = 6.40e-89 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Csor.00g142030 vs. NCBI nr
Match: XP_022982422.1 (glutaredoxin-C6 [Cucurbita maxima]) HSP 1 Score: 263 bits (672), Expect = 1.84e-88 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Csor.00g142030 vs. NCBI nr
Match: XP_038899998.1 (glutaredoxin-C6-like [Benincasa hispida]) HSP 1 Score: 234 bits (596), Expect = 7.64e-77 Identity = 123/137 (89.78%), Postives = 128/137 (93.43%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy TrEMBL
Match: A0A6J1FK67 (glutaredoxin-C6-like OS=Cucurbita moschata OX=3662 GN=LOC111446482 PE=3 SV=1) HSP 1 Score: 265 bits (676), Expect = 2.18e-89 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy TrEMBL
Match: A0A6J1IWK8 (glutaredoxin-C6 OS=Cucurbita maxima OX=3661 GN=LOC111481252 PE=3 SV=1) HSP 1 Score: 263 bits (672), Expect = 8.89e-89 Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy TrEMBL
Match: A0A5D3D950 (Glutaredoxin-C6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002100 PE=3 SV=1) HSP 1 Score: 229 bits (584), Expect = 2.34e-75 Identity = 120/136 (88.24%), Postives = 127/136 (93.38%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy TrEMBL
Match: A0A0A0L5B1 (Glutaredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G646150 PE=3 SV=1) HSP 1 Score: 229 bits (584), Expect = 2.34e-75 Identity = 120/136 (88.24%), Postives = 127/136 (93.38%), Query Frame = 0
BLAST of Csor.00g142030 vs. ExPASy TrEMBL
Match: A0A1S3BUK1 (glutaredoxin-C6 OS=Cucumis melo OX=3656 GN=LOC103493666 PE=3 SV=1) HSP 1 Score: 229 bits (584), Expect = 2.34e-75 Identity = 120/136 (88.24%), Postives = 127/136 (93.38%), Query Frame = 0
BLAST of Csor.00g142030 vs. TAIR 10
Match: AT4G33040.1 (Thioredoxin superfamily protein ) HSP 1 Score: 172.9 bits (437), Expect = 1.7e-43 Identity = 96/140 (68.57%), Postives = 108/140 (77.14%), Query Frame = 0
BLAST of Csor.00g142030 vs. TAIR 10
Match: AT5G11930.1 (Thioredoxin superfamily protein ) HSP 1 Score: 158.3 bits (399), Expect = 4.3e-39 Identity = 89/150 (59.33%), Postives = 109/150 (72.67%), Query Frame = 0
BLAST of Csor.00g142030 vs. TAIR 10
Match: AT1G28480.1 (Thioredoxin superfamily protein ) HSP 1 Score: 91.7 bits (226), Expect = 5.0e-19 Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 0
BLAST of Csor.00g142030 vs. TAIR 10
Match: AT3G02000.1 (Thioredoxin superfamily protein ) HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18 Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 0
BLAST of Csor.00g142030 vs. TAIR 10
Match: AT5G18600.1 (Thioredoxin superfamily protein ) HSP 1 Score: 88.6 bits (218), Expect = 4.2e-18 Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|