Csor.00g141310 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g141310
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	F-box protein GID2-like
Location	Csor_Chr01: 13507072 .. 13507617 (+)
RNA-Seq Expression	Csor.00g141310
Synteny	Csor.00g141310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGACTTGTTCCTGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGAGGAGGAGGAGGAGGCGCCTCCGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCATCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

mRNA sequence

ATGAAGCGACTTGTTCCTGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGAGGAGGAGGAGGAGGCGCCTCCGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCATCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

Coding sequence (CDS)

ATGAAGCGACTTGTTCCTGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGAGGAGGAGGAGGAGGCGCCTCCGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCATCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

Protein sequence

MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

Homology

[Close]

BLAST of Csor.00g141310 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 96/183 (52.46%), Postives = 114/183 (62.30%), Query Frame = 0


Query: 1   MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDA 60
           MKR   D    GD   +  KK++               +  GF NLD+NL++EV KHVDA
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMK-----------STEEEEIGFSNLDENLVYEVLKHVDA 60

Query: 61  TTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120
            TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++W
Sbjct: 61  KTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW 120

Query: 121 PLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNF 180
           PL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F
Sbjct: 121 PLSKP---------------------------NPRARFGKDELKLTLSLLSIRYYEKMSF 145

[Close]

BLAST of Csor.00g141310 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26
Identity = 65/153 (42.48%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 32  GASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 91
           G  ++    +L ++L+FEV +  +A TLA AACVS+ W + AEDERLWE  C R WAN G
Sbjct: 66  GEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLG 125

Query: 92  CGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW--STFPAMIGSK 151
              +QLR+VVL+LGGFRRLH+++I PL                    W  +  P   G +
Sbjct: 126 FSERQLRAVVLSLGGFRRLHAVYIRPL-------------------QWRGAGVPRQQGRR 185

Query: 152 -PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE 182
            PP R G+D+V LSLSL SI +++ M    +D+
Sbjct: 186 QPPVRLGRDQVQLSLSLFSIGFFQNMPCPKKDK 199

[Close]

BLAST of Csor.00g141310 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 40  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 99
           +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 100 VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEV 159
           VV ALGG+R L+ L I P                           ++   P   W +D++
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------------VLARLPKLLWTRDQL 133

Query: 160 HLSLSLLSIRYYEKM 175
            LSLSL  + YYE++
Sbjct: 148 QLSLSLYCVHYYERL 133

[Close]

BLAST of Csor.00g141310 vs. NCBI nr
Match: KAG6608444.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370 bits (949), Expect = 3.37e-129
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD 180
           PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD
Sbjct: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD 180

[Close]

BLAST of Csor.00g141310 vs. NCBI nr
Match: KAG7037780.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (937), Expect = 2.36e-127
Identity = 181/182 (99.45%), Postives = 181/182 (99.45%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG-ASDRTGFVNLDDNLLFEVFKHVDATTL 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG ASDRTGFVNLDDNLLFEVFKHVDATTL
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR 180
           KPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
Sbjct: 121 KPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR 180

[Close]

BLAST of Csor.00g141310 vs. NCBI nr
Match: XP_022982290.1 (F-box protein GID2-like [Cucurbita maxima])

HSP 1 Score: 364 bits (935), Expect = 5.12e-127
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG---ASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG   ASDRTGFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

[Close]

BLAST of Csor.00g141310 vs. NCBI nr
Match: XP_022941417.1 (F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 361 bits (926), Expect = 1.05e-125
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGG ASDR GFVNLDDNLLFEVFKHVDATTLA
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGG-ASDRPGFVNLDDNLLFEVFKHVDATTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD 180
           PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD
Sbjct: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD 180

[Close]

BLAST of Csor.00g141310 vs. NCBI nr
Match: XP_023521607.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356 bits (914), Expect = 9.39e-124
Identity = 180/188 (95.74%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG------ASDRTGFVNLDDNLLFEVFKHV 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG      ASDRTGFVNLDDNLLFEV KHV
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGGGGASDRTGFVNLDDNLLFEVLKHV 60

Query: 61  DATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLF 120
           DATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLF
Sbjct: 61  DATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLF 120

Query: 121 IWPLTKPQAPSTSASASSSSSSS-PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK 180
           IWPLTKPQAPSTSASASSSSSSS PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK
Sbjct: 121 IWPLTKPQAPSTSASASSSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEK 180

[Close]

BLAST of Csor.00g141310 vs. ExPASy TrEMBL
Match: A0A6J1J293 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111481166 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 2.48e-127
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG---ASDRTGFVNLDDNLLFEVFKHVDAT 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGG   ASDRTGFVNLDDNLLFEVFKHVDAT
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDAT 60

Query: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120
           TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP
Sbjct: 61  TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWP 120

Query: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180
           LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS
Sbjct: 121 LTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFS 180

[Close]

BLAST of Csor.00g141310 vs. ExPASy TrEMBL
Match: A0A6J1FMD6 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111446715 PE=4 SV=1)

HSP 1 Score: 361 bits (926), Expect = 5.07e-126
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA 60
           MKRLVPDGDGERKMGKKLRVDSVDCEGGGGG ASDR GFVNLDDNLLFEVFKHVDATTLA
Sbjct: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGG-ASDRPGFVNLDDNLLFEVFKHVDATTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD 180
           PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD
Sbjct: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRD 180

[Close]

BLAST of Csor.00g141310 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 304 bits (778), Expect = 1.67e-103
Identity = 152/179 (84.92%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA 60
           MKR+VP+G G+RK  KK R  S DC+GGG    SD+TGF+NLDDNLLFEVFKHVDA TLA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFMNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR 179
           PQ+ S+S S SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFS+R
Sbjct: 121 PQSSSSSTS-SSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSR 175

[Close]

BLAST of Csor.00g141310 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 304 bits (779), Expect = 1.85e-103
Identity = 154/188 (81.91%), Postives = 165/188 (87.77%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVD-CEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTL 60
           MKR+VPDG G+RKMGKK + ++ D   GGGG   SD+TGF+NLDDNLLFEVFKHVDA TL
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQAPSTSASASSSSSSSP--------WSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYY 179
           KPQ+ S+S+S+SSSSSSS         WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYY
Sbjct: 121 KPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYY 180

[Close]

BLAST of Csor.00g141310 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 303 bits (775), Expect = 5.32e-103
Identity = 151/181 (83.43%), Postives = 163/181 (90.06%), Query Frame = 0


Query: 1   MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLA 60
           MKR+VP+G G+RK  KK R  S DC+GGG    SD+TGF+NLDDNLLFEVFKHVDA TLA
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG---VSDKTGFLNLDDNLLFEVFKHVDARTLA 60

Query: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120
           MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK
Sbjct: 61  MAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTK 120

Query: 121 PQAPSTSASASSSS--SSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSN 179
           PQ+ S+S+S++SSS  SSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNF +
Sbjct: 121 PQSSSSSSSSTSSSTSSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFGS 178

[Close]

BLAST of Csor.00g141310 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46
Identity = 96/183 (52.46%), Postives = 114/183 (62.30%), Query Frame = 0


Query: 1   MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGASDRTGFVNLDDNLLFEVFKHVDA 60
           MKR   D    GD   +  KK++               +  GF NLD+NL++EV KHVDA
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMK-----------STEEEEIGFSNLDENLVYEVLKHVDA 60

Query: 61  TTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120
            TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++W
Sbjct: 61  KTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW 120

Query: 121 PLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNF 180
           PL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F
Sbjct: 121 PLSKP---------------------------NPRARFGKDELKLTLSLLSIRYYEKMSF 145

[Close]

BLAST of Csor.00g141310 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-12
Identity = 40/135 (29.63%), Postives = 65/135 (48.15%), Query Frame = 0


Query: 40  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 99
           +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 100 VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEV 159
           VV ALGG+R L+ L I P                           ++   P   W +D++
Sbjct: 88  VVSALGGYRCLYFLCIRP---------------------------VLARLPKLLWTRDQL 133

Query: 160 HLSLSLLSIRYYEKM 175
            LSLSL  + YYE++
Sbjct: 148 QLSLSLYCVHYYERL 133

[Close]

BLAST of Csor.00g141310 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0


Query: 42  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG 92
           L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of Csor.00g141310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	1.8e-45	52.46	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.4e-26	42.48	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	5.0e-11	29.63	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of Csor.00g141310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608444.1	3.37e-129	100.00	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037780.1	2.36e-127	99.45	F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022982290.1	5.12e-127	98.37	F-box protein GID2-like [Cucurbita maxima]	[more]
XP_022941417.1	1.05e-125	98.90	F-box protein GID2-like [Cucurbita moschata]	[more]
XP_023521607.1	9.39e-124	95.74	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g141310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J293	2.48e-127	98.37	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111481166 PE=4 SV=1	[more]
A0A6J1FMD6	5.07e-126	98.90	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111446715 PE=4 SV=1	[more]
A0A6J1FA22	1.67e-103	84.92	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]
A0A0A0L2H5	1.85e-103	81.91	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A6J1ILD7	5.32e-103	83.43	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]

BLAST of Csor.00g141310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	1.3e-46	52.46	F-box family protein	[more]
AT5G48170.1	3.6e-12	29.63	F-box family protein	[more]
AT1G21760.1	2.1e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 42..82 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 41..83 e-value: 1.5E-7 score: 31.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 36..82 score: 9.232525
None	No IPR available	GENE3D	1.20.1280.50		coord: 33..142 e-value: 7.0E-12 score: 47.1
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 31..175
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 31..175
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 33..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g141310.m01	Csor.00g141310.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding