Csor.00g140840 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g140840
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 13707378 .. 13707668 (+)
RNA-Seq ExpressionCsor.00g140840
SyntenyCsor.00g140840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTCCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGGCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

mRNA sequence

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTCCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGGCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Coding sequence (CDS)

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTCCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGGCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Protein sequence

MAGINLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQEHPAVHLNSRPQSFHPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH
Homology
BLAST of Csor.00g140840 vs. NCBI nr
Match: KAG6608491.1 (hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 2.44e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MAGINLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQEHPAVHLNSRPQSFHPSPIAA 60
          MAGINLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQEHPAVHLNSRPQSFHPSPIAA
Sbjct: 1  MAGINLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQEHPAVHLNSRPQSFHPSPIAA 60

Query: 61 TDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
          TDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH
Sbjct: 61 TDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96

BLAST of Csor.00g140840 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 3.78e-17
Identity = 59/110 (53.64%), Postives = 67/110 (60.91%), Query Frame = 0

Query: 4   INLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQ---------------EHPAVH-LN 63
           I LIS  AA  +L+L+S FN  I HTQ  RLLPME                E  AV  L 
Sbjct: 6   IKLISTFAA--ILILSSTFN--ISHTQA-RLLPMENPDLVNIPEDLHRKTVETVAVAPLK 65

Query: 64  SRPQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
           S P +F H +  A  DV+V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  SGPLAFDHDTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Csor.00g140840 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 2.07e-15
Identity = 52/97 (53.61%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 16  LVLASIFNNNIPHTQGLRLLPMEQEHPAVH--------------LNSRPQSFHPSPIAAT 75
           L+L+SI N  I HT G RLLP+E  HP V               L SRP +F  +  +  
Sbjct: 12  LILSSICN--ISHTHG-RLLPVE--HPIVGNLHRKIVETAGVAPLGSRPPAFQRTTSSPG 71

Query: 76  DVD--VHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
           D D  V GGDFRPTTPGHSPG GH LAP SHVDSKIH
Sbjct: 72  DGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

BLAST of Csor.00g140840 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.48e-15
Identity = 57/110 (51.82%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 4   INLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQ---------------EHPAVH-LN 63
           I LIS  AA  +L+L+S FN  I HTQ  RLLP+E                E  AV  L 
Sbjct: 6   IKLISTFAA--ILILSSTFN--ISHTQA-RLLPVENPDLVNIPEDIHRKTVETVAVAPLK 65

Query: 64  SRPQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
           S P +F H +  A  DV+V GGDFRPTT GHSPGAGH +AP SH+DSKIH
Sbjct: 66  SGPLAFDHDTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Csor.00g140840 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.05e-11
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 15  LLVLASIFNNN-----IPHTQGLRLLPMEQE-HPAVH-------LNSRPQSFHPSPIAAT 74
           +L+L+S F+ +     +P T+ L  + + ++ HP +        L S P +F       T
Sbjct: 15  ILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRDTFFTT 74

Query: 75  -DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
            + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 75  SNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Csor.00g140840 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.83e-17
Identity = 59/110 (53.64%), Postives = 67/110 (60.91%), Query Frame = 0

Query: 4   INLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQ---------------EHPAVH-LN 63
           I LIS  AA  +L+L+S FN  I HTQ  RLLPME                E  AV  L 
Sbjct: 6   IKLISTFAA--ILILSSTFN--ISHTQA-RLLPMENPDLVNIPEDLHRKTVETVAVAPLK 65

Query: 64  SRPQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
           S P +F H +  A  DV+V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  SGPLAFDHDTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Csor.00g140840 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.20e-15
Identity = 57/110 (51.82%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 4   INLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQ---------------EHPAVH-LN 63
           I LIS  AA  +L+L+S FN  I HTQ  RLLP+E                E  AV  L 
Sbjct: 6   IKLISTFAA--ILILSSTFN--ISHTQA-RLLPVENPDLVNIPEDIHRKTVETVAVAPLK 65

Query: 64  SRPQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
           S P +F H +  A  DV+V GGDFRPTT GHSPGAGH +AP SH+DSKIH
Sbjct: 66  SGPLAFDHDTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Csor.00g140840 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.06e-12
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 15  LLVLASIFNNN-----IPHTQGLRLLPMEQE-HPAVH-------LNSRPQSFHPSPIAAT 74
           +L+L+S F+ +     +P T+ L  + + ++ HP +        L S P +F       T
Sbjct: 15  ILILSSTFHVSHTQARMPPTKNLDRVEISKDLHPKIEETVAVAPLKSEPLAFDRDTFFTT 74

Query: 75  -DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96
            + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 75  SNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Csor.00g140840 vs. ExPASy TrEMBL
Match: A0A2J6MI11 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.78e-04
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 63 VDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSK 94
          V ++ GDFRPTTPGHSPGAGH + P +  D +
Sbjct: 65 VVINEGDFRPTTPGHSPGAGHSVGPTATFDPQ 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608491.12.44e-61100.00hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK20222.13.78e-1753.64hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa][more]
KAG6591363.12.07e-1553.61Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia][more]
KAA0064365.12.48e-1551.82hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa][more]
KGN55172.11.05e-1142.71hypothetical protein Csa_012400 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3D9H81.83e-1753.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEP21.20e-1551.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0L3I55.06e-1242.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1[more]
A0A2J6MI116.78e-0459.38Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g140840.m01Csor.00g140840.m01mRNA