Csor.00g140600 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g140600
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	30S ribosomal protein S9
Location	Csor_Chr01: 13834820 .. 13836323 (-)
RNA-Seq Expression	Csor.00g140600
Synteny	Csor.00g140600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGTCTTCTATCTTTTCCCTTATTCGTGTACTTGCGTTTGGTTTCATCCATTTTAGCTTTACTATTTTTGGCAGTGGATGTTCTTTGGACGATTTAGGGTTGTTGTTTCTTCTGCTGGATTCGACTAGGTTCGTTTAATGGTAATGCGAATGTTTTTTTTTTTGGATTAAACCGAAGATTGTAACTATAGGATCGTGATTTCTGTCTTTGATGCGCAAATTCTTGAACCATCTAGAGATGGAAGTGATTATTCAGTGTCTTTTCACTGGCCTTATAATTGATCTGCAGCAATTATTGTATTGAATTGAGATTGTGGAATAAACTTCGAACAACATTATCTACATTCTGGAGCATGTAAGTCTCTTAACGAGTAATTAAATTCTAAGCTTTCGGTACTTCATCTCATATGTTGAACATGGATTAGATTCCATTGCTTGCTGCCAAATTCAAAGGGATTGTGGAATAAGTGTTTTCATCAGTCACAAGTTGAGTTTGAGTTTCCAGTGGAATGGTTCTTAATGCTAAAAGGCATGTCTATTAGGGGGATCGAGTAGTTCATTTATTCTTTCTCAGTGGATTTGGGAGTGAAAATGTGCTTTTGTTCTTCCACTTCCGTCACATGTGGGAATCTTTACTTTCTGATGATGTTAGATCACATTGCAAATCCTTGGTTTGCCAGCGTTCATTTACATCTGTGCTCTAATATGTAAAGATATTGAGAAAATTTAGTGACCAAGTGTGTTTCATTTCTTGTTAGGATGCCATTTTGCCTTGAATGTTTATTGGGTTTTCCTGGTATTGATGCTTGGATAACCCCATTCAAATTATGAGTGTGGTTTAAGTAGAGAGAGTTGTGCTCACCTCTGGGTTGGAATATACAATGTGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA

mRNA sequence

ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA

Coding sequence (CDS)

ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA

Protein sequence

MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR

Homology

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BLAST of Csor.00g140600 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.1e-78
Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 4   SVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN++SFPR+ S+     KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

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BLAST of Csor.00g140600 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-74
Identity = 151/208 (72.60%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSA---- 60
           MA S+SSL  S +SLSF+S ++  P +L   R+K   +S+P    PLV++A++ +A    
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNP 120
            ETA+L+ +VKSRLPGGFAAQT+IGTGRRK A+ARVVLQEGTGK IINYRDAKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVSA HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDSRVVERKKAGLKKARKAPQFSKR 205
           LLTRDSR+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]

BLAST of Csor.00g140600 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.6e-36
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 133 QYSKR 137

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BLAST of Csor.00g140600 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-35
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 200 QFSKR 205
           QFSKR
Sbjct: 133 QFSKR 137

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BLAST of Csor.00g140600 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.6e-34
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 81  GTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVK 140
           GTGRRK+AVARV L  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 141 AEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 201 FSKR 205
           +SKR
Sbjct: 135 YSKR 138

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BLAST of Csor.00g140600 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374 bits (960), Expect = 4.09e-130
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370 bits (951), Expect = 9.63e-129
Identity = 201/204 (98.53%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQ+SQMPN+LSFPRSKSLVISHPKSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 366 bits (940), Expect = 4.58e-127
Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQ+PN+LSFPRSKSLVISH KSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 347 bits (889), Expect = 2.71e-119
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 340 bits (872), Expect = 1.06e-116
Identity = 185/204 (90.69%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVS  PN+LSFPRSKSL ISH  S +PLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L+++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 374 bits (960), Expect = 1.98e-130
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 2.22e-127
Identity = 200/204 (98.04%), Postives = 202/204 (99.02%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATSVSSLAFSLSSLSFSSQVSQ+PN+LSFPRSKSLVISH KSNSPLVVSASATSAVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 347 bits (889), Expect = 1.31e-119
Identity = 185/204 (90.69%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MA+S+SSLAFSLSSLSFSSQ+SQ PN LSFPRSKSLVISHP ++SPLVVSASA + VETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+++VKSRLPGGFAAQTLIGTGRRKSA+ARVV+QEGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 337 bits (865), Expect = 5.96e-116
Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P +LSFPRSKSL+IS   S SPL+VSASA +AVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 337 bits (865), Expect = 5.96e-116
Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P +LSFPRSKSL+IS   S SPL+VSASA +AVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 204
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of Csor.00g140600 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-79
Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 4   SVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN++SFPR+ S+     KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of Csor.00g140600 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-17
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 0


Query: 52  SATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEY 111
           S+ + +E    ++  K+R+          GTGRRK ++ARV +Q G GK  +N ++   Y
Sbjct: 279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVY 338

Query: 112 LQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSP 171
                     ++ PL        +D+    +GGG +GQ  AI LGI+RAL     D R+ 
Sbjct: 339 FPMLDHRAALLR-PLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTS 398

Query: 172 LKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           L+  G LTRDSRVVERKK G  KARK+ Q+ KR
Sbjct: 399 LRAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 430

The following BLAST results are available for this feature:

BLAST of Csor.00g140600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ27	3.1e-78	78.16	30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ...	[more]
P82278	2.1e-74	72.60	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE...	[more]
Q8DMK7	8.6e-36	63.20	30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
Q9MUV1	1.5e-35	66.40	30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE...	[more]
B2ITM7	3.6e-34	61.29	30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O...	[more]

BLAST of Csor.00g140600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940950.1	4.09e-130	100.00	30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r...	[more]
XP_023523256.1	9.63e-129	98.53	30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022982074.1	4.58e-127	98.04	30S ribosomal protein S9, chloroplastic [Cucurbita maxima]	[more]
XP_022143016.1	2.71e-119	90.69	30S ribosomal protein S9, chloroplastic [Momordica charantia]	[more]
XP_038903352.1	1.06e-116	90.69	30S ribosomal protein S9, chloroplastic [Benincasa hispida]	[more]

BLAST of Csor.00g140600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FS60	1.98e-130	100.00	30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J3K2	2.22e-127	98.04	30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]
A0A6J1CNY0	1.31e-119	90.69	30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7UBW5	5.96e-116	90.20	30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CRR0	5.96e-116	90.20	30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ...	[more]

BLAST of Csor.00g140600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74970.1	2.2e-79	78.16	ribosomal protein S9	[more]
AT3G49080.1	7.1e-17	38.56	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 70..204 e-value: 8.8E-50 score: 170.3
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 83..204 e-value: 1.1E-41 score: 142.2
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 46..204
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 46..204
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 143..161
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 74..204 score: 32.512802
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 78..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g140600.m01	Csor.00g140600.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome