Csor.00g140300 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g140300
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
LocationCsor_Chr01: 13964915 .. 13965615 (+)
RNA-Seq ExpressionCsor.00g140300
SyntenyCsor.00g140300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGGTAAAGCTAGTTTAATTTCTATTTTAGTTTTTTTTTTTAATTTTTAAATGAAATTATTAATTGTAATTATTTGCAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGTATGGTCTGGTTAAGTCAACTGTGTTCTGACTTTTTTATGTTGTAATTTTGAGTTTATTTATTTATTTATTTTTGGCAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTAATTTATTTAATTAATTAATTAATTAATTAATTAATTTTTTTAAAATATGATAATTGGAATATTTGAATACGAGGGTTTATGACAAAAACTTGCGGTTTTATCAGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATCGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGGTCGTGGTGGAGTCGGTGCTTGA

mRNA sequence

ATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATCGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGGTCGTGGTGGAGTCGGTGCTTGA

Coding sequence (CDS)

ATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGTGATCGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGGTCGTGGTGGAGTCGGTGCTTGA

Protein sequence

MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRLGRGGVGA
Homology
BLAST of Csor.00g140300 vs. NCBI nr
Match: XP_022940046.1 (uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothetical protein SDJN03_01886, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037867.1 hypothetical protein SDJN02_01498 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300 bits (767), Expect = 1.26e-102
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRLGRGGVGA 145
           GNSYVSQFHVANVAASRLGRGGVGA
Sbjct: 121 GNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of Csor.00g140300 vs. NCBI nr
Match: XP_022982140.1 (uncharacterized protein LOC111481065 [Cucurbita maxima])

HSP 1 Score: 297 bits (761), Expect = 1.03e-101
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGLLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRLGRGGVGA 145
           GNSYVSQFHVANVAASRLGRGGVGA
Sbjct: 121 GNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of Csor.00g140300 vs. NCBI nr
Match: XP_023525160.1 (uncharacterized protein LOC111788844 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297 bits (760), Expect = 1.47e-101
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKGFLDMESEA LDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEAGLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRLGRGGVGA 145
           GNSYVSQFHVANV+ASRLGRGGVGA
Sbjct: 121 GNSYVSQFHVANVSASRLGRGGVGA 145

BLAST of Csor.00g140300 vs. NCBI nr
Match: XP_038898962.1 (uncharacterized protein LOC120086405 [Benincasa hispida])

HSP 1 Score: 237 bits (604), Expect = 8.16e-78
Identity = 119/145 (82.07%), Postives = 131/145 (90.34%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPATDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETSEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           K+E GGN LQRS+S+PPF T KG L+MESE +L+ KPKKN WWRRSNWAFLNEPP  EGS
Sbjct: 61  KMENGGN-LQRSASLPPFKTGKGLLEMESEKNLE-KPKKNAWWRRSNWAFLNEPPETEGS 120

Query: 121 GNSYVSQFHVANVAASRLGRGGVGA 145
           GNSYVSQFHVAN+AASRLG GGV A
Sbjct: 121 GNSYVSQFHVANMAASRLGPGGVSA 142

BLAST of Csor.00g140300 vs. NCBI nr
Match: XP_008466545.1 (PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa] >TYK19682.1 putative DNA polymerase epsilon catalytic subunit A [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (597), Expect = 1.02e-76
Identity = 117/146 (80.14%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           + E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEPP  EG
Sbjct: 61  EKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEPPETEG 120

Query: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of Csor.00g140300 vs. ExPASy TrEMBL
Match: A0A6J1FHE8 (uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC111445795 PE=4 SV=1)

HSP 1 Score: 300 bits (767), Expect = 6.09e-103
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRLGRGGVGA 145
           GNSYVSQFHVANVAASRLGRGGVGA
Sbjct: 121 GNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of Csor.00g140300 vs. ExPASy TrEMBL
Match: A0A6J1J1T2 (uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065 PE=4 SV=1)

HSP 1 Score: 297 bits (761), Expect = 5.01e-102
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK
Sbjct: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
           KVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS
Sbjct: 61  KVEFGGNNLQRSSSVPPFNTRKGLLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120

Query: 121 GNSYVSQFHVANVAASRLGRGGVGA 145
           GNSYVSQFHVANVAASRLGRGGVGA
Sbjct: 121 GNSYVSQFHVANVAASRLGRGGVGA 145

BLAST of Csor.00g140300 vs. ExPASy TrEMBL
Match: A0A5D3D820 (Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00760 PE=4 SV=1)

HSP 1 Score: 234 bits (597), Expect = 4.93e-77
Identity = 117/146 (80.14%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           + E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEPP  EG
Sbjct: 61  EKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEPPETEG 120

Query: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of Csor.00g140300 vs. ExPASy TrEMBL
Match: A0A1S3CST6 (uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=4 SV=1)

HSP 1 Score: 234 bits (597), Expect = 4.93e-77
Identity = 117/146 (80.14%), Postives = 132/146 (90.41%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K
Sbjct: 1   MGSLMAGWDSPTTDPQEVSHRRNKSLTKEEIEAFWKTKKQVHEEHLRAILSPFETLEE-K 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           + E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+KN WWRRSNWAFLNEPP  EG
Sbjct: 61  EKENVGNNLQRSASMPPFNTRKGLLENVKSETNLE-KPEKNPWWRRSNWAFLNEPPETEG 120

Query: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145
           SGNSYVSQFHVAN+AASRLGRGGV A
Sbjct: 121 SGNSYVSQFHVANMAASRLGRGGVSA 144

BLAST of Csor.00g140300 vs. ExPASy TrEMBL
Match: A0A6J1DA26 (uncharacterized protein LOC111018241 OS=Momordica charantia OX=3673 GN=LOC111018241 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 6.77e-77
Identity = 118/146 (80.82%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAIL-SPFQSCEEI 60
           MGSLMAGW   ASDPE+VSHRRNKSLT+EEIEAFWKTKKQL EEHL+AIL  P +S +EI
Sbjct: 1   MGSLMAGW---ASDPEQVSHRRNKSLTREEIEAFWKTKKQLEEEHLKAILRDPLESSDEI 60

Query: 61  KKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEG 120
           KKVEFGGN LQRS+SVPP NT K F+ MESEA L+ KPKKNGWWRRSNWAFLNEPPV EG
Sbjct: 61  KKVEFGGN-LQRSNSVPPLNTNKSFMAMESEADLEEKPKKNGWWRRSNWAFLNEPPVTEG 120

Query: 121 SGNSYVSQFHVANVAASRLGRGGVGA 145
           SGN YVSQFHVANVAAS+ GRGGV A
Sbjct: 121 SGNRYVSQFHVANVAASKFGRGGVSA 142

BLAST of Csor.00g140300 vs. TAIR 10
Match: AT1G19530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-21
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 0

Query: 1   MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIK 60
           MGSLM+GWDS   DP+ V  RR KSLT+EEI+ FWKTKK+  EE         Q+  ++ 
Sbjct: 1   MGSLMSGWDSRVRDPKSV--RRCKSLTREEIDTFWKTKKKNEEE------EHVQAFSKLV 60

Query: 61  KVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAFLNEPPVIEGS 120
             E   +  +   SV              +   +N+ K +GWWR++ WAFLNEP   EG 
Sbjct: 61  TQEGAQSQAKEKKSV--------------DDLFENQSKSSGWWRKTYWAFLNEPREEEGR 112

Query: 121 GNSYVSQFHVANVA 135
            N+YVSQF VA++A
Sbjct: 121 PNNYVSQFKVAHIA 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022940046.11.26e-102100.00uncharacterized protein LOC111445795 [Cucurbita moschata] >KAG6608544.1 hypothet... [more]
XP_022982140.11.03e-10199.31uncharacterized protein LOC111481065 [Cucurbita maxima][more]
XP_023525160.11.47e-10198.62uncharacterized protein LOC111788844 [Cucurbita pepo subsp. pepo][more]
XP_038898962.18.16e-7882.07uncharacterized protein LOC120086405 [Benincasa hispida][more]
XP_008466545.11.02e-7680.14PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo] >KAA0041574.1 put... [more]
Match NameE-valueIdentityDescription
A0A6J1FHE86.09e-103100.00uncharacterized protein LOC111445795 OS=Cucurbita moschata OX=3662 GN=LOC1114457... [more]
A0A6J1J1T25.01e-10299.31uncharacterized protein LOC111481065 OS=Cucurbita maxima OX=3661 GN=LOC111481065... [more]
A0A5D3D8204.93e-7780.14Putative DNA polymerase epsilon catalytic subunit A OS=Cucumis melo var. makuwa ... [more]
A0A1S3CST64.93e-7780.14uncharacterized protein LOC103503930 OS=Cucumis melo OX=3656 GN=LOC103503930 PE=... [more]
A0A6J1DA266.77e-7780.82uncharacterized protein LOC111018241 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
Match NameE-valueIdentityDescription
AT1G19530.19.8e-2142.54unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR33872:SF2DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..136
NoneNo IPR availablePANTHERPTHR33872DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g140300.m01Csor.00g140300.m01mRNA