Csor.00g139740 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g139740
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 14213410 .. 14215614 (+)
RNA-Seq ExpressionCsor.00g139740
SyntenyCsor.00g139740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCGATTGCCGATCATGGGCCGTTTACTGGTCTCACGTTATGGGTCCATGAGGAGAAATTCTGGCCCAAGAAAGCAGGGGCAAAATCGTCAATGGGTAGCGGAGAAGGAAACCCTAAAATGACTTGCCCATTCTCCTTTAAATAGTACACAGCTTCTTGACTCTTTACTCAAACGCTCTATTTCGATTTTAGGGGTACTAAGCTGCGCGCTCTGCATGACGAATCCTCTCGTCTGCTTCTTGTTTTGATGGTTTCTTGTTCATATAATGGCGTTGTTTTTCTGTGCTCAATTTAGAACCAGATGATGATTTTGGATTCAAATTCTCACGACGGTCGTCTGAGACGACGCTTTACGTGTCGATATTGATGCAATGATCCATTTCTTCTGATGGTCTAGTTTTTCTTCTTTACCTCTGAGAAAATTCTCTTTTATAAAACACCTTTGCTCCTGCAAACGAATTCTGATTCTGATTTCTTTTTCTGAATGCGTTTTCTATGCGATGAAGGCTATTCTATTGCTTTTGTGATTGGTGCAAGCATAGTGATGATGATTTAAACCTGTCCGATCAATCTAATGACTGGAATAACAACCTCCTACTCATACTGAATGCTTGCCTATTTTAAAGCTACGCCTTCTAATGTTTACTCGTTTTAGATCTCATTATCCGTGATTTGGTAGTTTTTGTTTTCCTGTTTTTGATTTTTTATTCCGTCTGTCTACTTCGTTTGATTTTTTTTGTTTACAATGGCACCATGAGGATTCACTTGTATTCAGCATGAGATTCAAGGATCAGTGAATTTGAAGCACAAATTATAAAGTCCTTTTCATTCTGAGTGCCCTAATTTAAGCAGCTTAAGAAGTCCTCTTCCTTTTCCTTCCGAGTGTCCTTTCATACCGAGTCCTTTTTACTAATTTAGCAGCCTAAAAAACTTTTCGTGTTTATTCTGACTGTTCAATTCTTTCTTTCTTTTTACCATCAATTTTAAGTTCTTTCTTCGATTTCCAAATGATTTATAGGTATACAAGATAAAAATTACAATGATATTACTCTGATTTACAAATTTCGTCCAATGATGTATTGATCGGCTCATTTCTCTTGACTGTCTTGTCCGACTAGTGCTGGTTTAGTCACCAGCCACAGTAGAAATATGTTTGTCATTGATATGTTTTGAAAATTAGTGGCTAGTTTGTTGCCTATGTATGAATAGTTGTCCTTCCAGAGCCGCATATACCTCAAATCCATTCTTTGAGTGAAAAAATACATGCGACGTTGATCGGGCAAAATAAGATTACAAGTTGCAGTTAGAAAAAGTAATCCCAGTTTATCACTCTCTTGGGAATGTAAATGTAGTAACGCGTCTTGACAAATTGACCATTGTGCGACATTGTAAACTGGCACTACCATGGAATTGGTATTACATAAATGAAACTCAGGTTTAACTGTAATGATCTAATGAACTACCGTATCCTAACCGGAAGGCACTAAAAATCCTTTTTGCATTGTTTCATAACTTCATGTTCCAATACGTGATACTGCTTGAAACCCGCTAATTTAGATGAACCCGAACCTCCTCCCCATTTGAACCTTTCTCTGTTCGACCAACTTTAATGTAACTAGAAGTCTGTCTTTTATTATATTTTCACATCATTAACCAATATTACATCTGTAGTACGTTTTGCATCCCAACCCTCCCAGGCCGACTTACTCCGTCAACGAATTACACTTTCACTATGCATTATATCATTGATCACCAATGAGCTTTTTTTACATGTCCTTTCTCACCGTTTATTATTTCATCTTAAATTTCCAGTTCGAGTTCGACGTCGTTATCAGCATCCGAGAAAGTTTTCACAGAAGCTCAGACATGTAAAAGTAGGCCTTAGCAGGTACAGAAGAATAGATGCCTCTGCCATCTCACTCGGCAGGAAAGTAGCTAGAAAATCACAATCAGAATCTAGACTACTAATGGACAGTCTAAACATTCATCTACACAGGAGCTCAGAAAGAGTAAATTAACGTTCATTTTTCTTCTTTGTCATTCCTTATATCATTGATTACCAATGCGCTCTTTATTTACGTTTCTCTGCTTTATTGACCAGATTTCATCGGGTGAATTCACTAATGGTGGTAACCAATTACCCCCACAATGTCCTATTGGTCCATTGCAATCCTCCGGCACAGTTCTTAGATTACTGTAA

mRNA sequence

ATGGGCTCGATTGCCGATCATGGGCCGTTTACTGGTCTCACGTTATGGGTCCATGAGGAGAAATTCTGGCCCAAGAAAGCAGGGGCAAAATCGTCAATGGTTCGAGTTCGACGTCGTTATCAGCATCCGAGAAAGTTTTCACAGAAGCTCAGACATGTAAAAGTAGGCCTTAGCAGGTACAGAAGAATAGATGCCTCTGCCATCTCACTCGGCAGGAAAGTAGCTAGAAAATCACAATCAGAATCTAGACTACTAATGGACAGTCTAAACATTCATCTACACAGGAGCTCAGAAAGAATTTCATCGGGTGAATTCACTAATGGTGGTAACCAATTACCCCCACAATGTCCTATTGGTCCATTGCAATCCTCCGGCACAGTTCTTAGATTACTGTAA

Coding sequence (CDS)

ATGGGCTCGATTGCCGATCATGGGCCGTTTACTGGTCTCACGTTATGGGTCCATGAGGAGAAATTCTGGCCCAAGAAAGCAGGGGCAAAATCGTCAATGGTTCGAGTTCGACGTCGTTATCAGCATCCGAGAAAGTTTTCACAGAAGCTCAGACATGTAAAAGTAGGCCTTAGCAGGTACAGAAGAATAGATGCCTCTGCCATCTCACTCGGCAGGAAAGTAGCTAGAAAATCACAATCAGAATCTAGACTACTAATGGACAGTCTAAACATTCATCTACACAGGAGCTCAGAAAGAATTTCATCGGGTGAATTCACTAATGGTGGTAACCAATTACCCCCACAATGTCCTATTGGTCCATTGCAATCCTCCGGCACAGTTCTTAGATTACTGTAA

Protein sequence

MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMVRVRRRYQHPRKFSQKLRHVKVGLSRYRRIDASAISLGRKVARKSQSESRLLMDSLNIHLHRSSERISSGEFTNGGNQLPPQCPIGPLQSSGTVLRLL
Homology
[Close]
BLAST of Csor.00g139740 vs. NCBI nr
Match: KAG6608600.1 (hypothetical protein SDJN03_01942, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262 bits (670), Expect = 2.75e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMVRVRRRYQHPRKFSQKLRHVKVGLSRY 60
           MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMVRVRRRYQHPRKFSQKLRHVKVGLSRY
Sbjct: 1   MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMVRVRRRYQHPRKFSQKLRHVKVGLSRY 60

Query: 61  RRIDASAISLGRKVARKSQSESRLLMDSLNIHLHRSSERISSGEFTNGGNQLPPQCPIGP 120
           RRIDASAISLGRKVARKSQSESRLLMDSLNIHLHRSSERISSGEFTNGGNQLPPQCPIGP
Sbjct: 61  RRIDASAISLGRKVARKSQSESRLLMDSLNIHLHRSSERISSGEFTNGGNQLPPQCPIGP 120

Query: 121 LQSSGTVLRLL 131
           LQSSGTVLRLL
Sbjct: 121 LQSSGTVLRLL 131

[Close]
BLAST of Csor.00g139740 vs. NCBI nr
Match: KAG7037918.1 (hypothetical protein SDJN02_01549, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (355), Expect = 6.69e-41
Identity = 79/132 (59.85%), Postives = 81/132 (61.36%), Query Frame = 0 

Query: 1   MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMV-RVRRRYQHPRKFSQKLRHVKVGLSR 60
           MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMV RV+R  QHPR+FSQKLRH       
Sbjct: 1   MGSIADHGPFTGLTLWVHEEKFWPKKAGAKSSMVLRVQRHNQHPRQFSQKLRH------- 60

Query: 61  YRRIDASAISLGRKVARKSQSESRLLMDSLNIHLHRSSERISSGEFTNGGNQLPPQCPIG 120
                                                   ISSGE TNGGNQLPPQCPIG
Sbjct: 61  ----------------------------------------ISSGEITNGGNQLPPQCPIG 85

Query: 121 PLQSSGTVLRLL 131
           PLQSSGTVLRLL
Sbjct: 121 PLQSSGTVLRLL 85

The following BLAST results are available for this feature:
BLAST of Csor.00g139740 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g139740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608600.12.75e-88100.00hypothetical protein SDJN03_01942, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037918.16.69e-4159.85hypothetical protein SDJN02_01549, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g139740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g139740 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g139740.m01Csor.00g139740.m01mRNA