Csor.00g139250 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g139250
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-H2 finger protein ATL80-like
Location	Csor_Chr01: 14453089 .. 14453649 (+)
RNA-Seq Expression	Csor.00g139250
Synteny	Csor.00g139250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCTTTTAGGTACCTCGCCGATGCCAACTCCTCCTCCATCTCCGACACGGTGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTTGGTCTCGTTGCTGTCGCTCGATGTGCCTGGCTACGCCACCTCGCTGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCATCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAATTCGTTGTCGGTGATGAAATCCGCGTTCTGCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCCTGTCCTTCATGCCGTCAGATTCTGGTGGGAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCTGCGAGCTCGAGTTCGAACGGTGGGACTGAATCCAGAGTAAAAGATGAAGGAGAAGATAAGAGGAATAGGTTCTTACCTTAG

mRNA sequence

ATGCGTCCTTTTAGGTACCTCGCCGATGCCAACTCCTCCTCCATCTCCGACACGGTGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTTGGTCTCGTTGCTGTCGCTCGATGTGCCTGGCTACGCCACCTCGCTGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCATCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAATTCGTTGTCGGTGATGAAATCCGCGTTCTGCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCCTGTCCTTCATGCCGTCAGATTCTGGTGGGAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCTGCGAGCTCGAGTTCGAACGGTGGGACTGAATCCAGAGTAAAAGATGAAGGAGAAGATAAGAGGAATAGGTTCTTACCTTAG

Coding sequence (CDS)

ATGCGTCCTTTTAGGTACCTCGCCGATGCCAACTCCTCCTCCATCTCCGACACGGTGGAGCCCGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATATGCGTTCTTGGTCTCGTTGCTGTCGCTCGATGTGCCTGGCTACGCCACCTCGCTGGCGATGGAGGCGGCGCTGCTTCCACTCGTCCTCCTCCGCCTCCTGCATCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACCGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAATTCGTTGTCGGTGATGAAATCCGCGTTCTGCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCCTGTCCTTCATGCCGTCAGATTCTGGTGGGAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCTGCGAGCTCGAGTTCGAACGGTGGGACTGAATCCAGAGTAAAAGATGAAGGAGAAGATAAGAGGAATAGGTTCTTACCTTAG

Protein sequence

MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDKRNRFLP

Homology

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BLAST of Csor.00g139250 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.4e-54
Identity = 111/192 (57.81%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 4   FRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD--- 63
           FR L ++N+ S +        +SD V+ILAALLCALICVLGL+AV+RC WLR LA     
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  -GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEF--AAQFSDCAICLAEFVVGDEIR 123
             G    +  PP  A+NKGLKKK+L+SLPK TF+ E   + +F++CAICLAEF  GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFHV+CIDTW  SHSSCPSCRQILV ++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 DEGEDKRNRFLP 187
            +GED  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]

BLAST of Csor.00g139250 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 9.3e-53
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 4   FRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGG 63
           FR L +ANS+S ++   P  ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A     
Sbjct: 6   FRLLQEANSTSPAEASPP--FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIA-SRNR 65

Query: 64  AASTRPPPPPASNKGLKKKILRSLPKYTFTAEF--AAQFSDCAICLAEFVVGDEIRVLPQ 123
           +  T PPP  A+NKGLKKK+LRSLPK T++ +   A +  +CAICL EF  GDE+RVLPQ
Sbjct: 66  SDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQ 125

Query: 124 CGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVK--DEGED 180
           CGHGFHVSCIDTW  SHSSCPSCRQILV ++C KCGG P SSSS    ++R+K  ++G D
Sbjct: 126 CGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPD 182

[Close]

BLAST of Csor.00g139250 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-37
Identity = 87/191 (45.55%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 2   RPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 61
           R  R+L  A+     + +  E   +D V+IL+ALLCAL+CV GL AVARCAWLR L G  
Sbjct: 3   RSSRFLGTASPPPPEEILAAE---TDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVN 62

Query: 62  GGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAA----------------QFSDCAI 121
             A    PPP    NKGLKKK L++LPK T+TA  +                   ++CAI
Sbjct: 63  PAAVGEAPPP----NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAI 122

Query: 122 CLAEFVVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSS 177
           C+ EF  G+EIR+LP C H FHV+CID W  S SSCPSCR+ILV  +C +CG   +++  
Sbjct: 123 CITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTA-- 180

[Close]

BLAST of Csor.00g139250 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-35
Identity = 80/141 (56.74%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 25  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKIL 84
           +SD V+IL+ALLCALICV GL AV RCAWLR     G           P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDS---------PSPNKGLKKKAL 84

Query: 85  RSLPKYTFTAE-----FAAQFSD---CAICLAEFVVGDEIRVLPQCGHGFHVSCIDTWFR 144
           +SLP+ TFTA       AA+  D   CAICL +F  G+EIRVLP CGH FHV CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 145 SHSSCPSCRQILVGSQCQKCG 158
           S SSCPSCR+IL   +C +CG
Sbjct: 145 SRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of Csor.00g139250 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 9   DANSSSISDTVEPER----YDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGA 68
           DAN  ++ D+V   +     D+  VIILAALLCALIC LG+ +V RC     L       
Sbjct: 18  DANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCV----LRCTRRFT 77

Query: 69  ASTRPPPPPAS-NKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLPQCG 128
            +  P    A+  KG+KK+ L+ +P  +++ E   + ++C ICL +FV G+ +RVLP+C 
Sbjct: 78  PNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCN 137

Query: 129 HGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNG 168
           HGFHV CIDTW  SHSSCP+CRQ L+  Q       PA+ S  G
Sbjct: 138 HGFHVKCIDTWLLSHSSCPTCRQSLLEHQT------PANGSRRG 171

[Close]

BLAST of Csor.00g139250 vs. NCBI nr
Match: KAG6608649.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037966.1 RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375 bits (964), Expect = 2.55e-131
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 RNRFLP 186
           RNRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of Csor.00g139250 vs. NCBI nr
Match: XP_022941514.1 (RING-H2 finger protein ATL80-like [Cucurbita moschata])

HSP 1 Score: 369 bits (947), Expect = 9.97e-129
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MR FRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVKDEGEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 RNRFLP 186
           RNRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of Csor.00g139250 vs. NCBI nr
Match: XP_023523429.1 (RING-H2 finger protein ATL8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369 bits (947), Expect = 9.97e-129
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
            GGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP
Sbjct: 61  RGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVKDEGEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 RNRFLP 186
           RNRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of Csor.00g139250 vs. NCBI nr
Match: XP_022982152.1 (RING-H2 finger protein ATL80 [Cucurbita maxima])

HSP 1 Score: 365 bits (938), Expect = 2.27e-127
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVKD GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKD-GEDK 180

Query: 181 RNRFLP 186
           RNRFLP
Sbjct: 181 RNRFLP 185

[Close]

BLAST of Csor.00g139250 vs. NCBI nr
Match: XP_004145558.1 (RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein Csa_012171 [Cucumis sativus])

HSP 1 Score: 346 bits (887), Expect = 1.36e-119
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 181 RNRFLP 186
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of Csor.00g139250 vs. ExPASy TrEMBL
Match: A0A6J1FNK0 (RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111446793 PE=4 SV=1)

HSP 1 Score: 369 bits (947), Expect = 4.83e-129
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MR FRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVKDEGEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 RNRFLP 186
           RNRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of Csor.00g139250 vs. ExPASy TrEMBL
Match: A0A6J1IVW2 (RING-H2 finger protein ATL80 OS=Cucurbita maxima OX=3661 GN=LOC111481072 PE=4 SV=1)

HSP 1 Score: 365 bits (938), Expect = 1.10e-127
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVKD GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKD-GEDK 180

Query: 181 RNRFLP 186
           RNRFLP
Sbjct: 181 RNRFLP 185

[Close]

BLAST of Csor.00g139250 vs. ExPASy TrEMBL
Match: A0A0A0L5Y2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 PE=4 SV=1)

HSP 1 Score: 346 bits (887), Expect = 6.56e-120
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           GGGA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 181 RNRFLP 186
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of Csor.00g139250 vs. ExPASy TrEMBL
Match: A0A5A7VGL3 (RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00440 PE=4 SV=1)

HSP 1 Score: 345 bits (884), Expect = 1.88e-119
Identity = 172/186 (92.47%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           G GA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GAGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 181 RNRFLP 186
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of Csor.00g139250 vs. ExPASy TrEMBL
Match: A0A1S3BWC1 (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1)

HSP 1 Score: 345 bits (884), Expect = 1.88e-119
Identity = 172/186 (92.47%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120
           G GA STRPPPPPASNKGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GAGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180
           QCGHGFHVSCIDTWFRSHSSCPSCRQILV SQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 181 RNRFLP 186
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of Csor.00g139250 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 211.8 bits (538), Expect = 4.6e-55
Identity = 111/192 (57.81%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 4   FRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD--- 63
           FR L ++N+ S +        +SD V+ILAALLCALICVLGL+AV+RC WLR LA     
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  -GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEF--AAQFSDCAICLAEFVVGDEIR 123
             G    +  PP  A+NKGLKKK+L+SLPK TF+ E   + +F++CAICLAEF  GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFHV+CIDTW  SHSSCPSCRQILV ++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 DEGEDKRNRFLP 187
            +GED  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]

BLAST of Csor.00g139250 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.6e-54
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 4   FRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGG 63
           FR L +ANS+S ++   P  ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A     
Sbjct: 6   FRLLQEANSTSPAEASPP--FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIA-SRNR 65

Query: 64  AASTRPPPPPASNKGLKKKILRSLPKYTFTAEF--AAQFSDCAICLAEFVVGDEIRVLPQ 123
           +  T PPP  A+NKGLKKK+LRSLPK T++ +   A +  +CAICL EF  GDE+RVLPQ
Sbjct: 66  SDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQ 125

Query: 124 CGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVK--DEGED 180
           CGHGFHVSCIDTW  SHSSCPSCRQILV ++C KCGG P SSSS    ++R+K  ++G D
Sbjct: 126 CGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPD 182

[Close]

BLAST of Csor.00g139250 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-38
Identity = 87/191 (45.55%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 2   RPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 61
           R  R+L  A+     + +  E   +D V+IL+ALLCAL+CV GL AVARCAWLR L G  
Sbjct: 3   RSSRFLGTASPPPPEEILAAE---TDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVN 62

Query: 62  GGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAA----------------QFSDCAI 121
             A    PPP    NKGLKKK L++LPK T+TA  +                   ++CAI
Sbjct: 63  PAAVGEAPPP----NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAI 122

Query: 122 CLAEFVVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSS 177
           C+ EF  G+EIR+LP C H FHV+CID W  S SSCPSCR+ILV  +C +CG   +++  
Sbjct: 123 CITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCGHHASTA-- 180

[Close]

BLAST of Csor.00g139250 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-36
Identity = 80/141 (56.74%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 25  DSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKIL 84
           +SD V+IL+ALLCALICV GL AV RCAWLR     G           P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDS---------PSPNKGLKKKAL 84

Query: 85  RSLPKYTFTAE-----FAAQFSD---CAICLAEFVVGDEIRVLPQCGHGFHVSCIDTWFR 144
           +SLP+ TFTA       AA+  D   CAICL +F  G+EIRVLP CGH FHV CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 145 SHSSCPSCRQILVGSQCQKCG 158
           S SSCPSCR+IL   +C +CG
Sbjct: 145 SRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of Csor.00g139250 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 9   DANSSSISDTVEPER----YDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGA 68
           DAN  ++ D+V   +     D+  VIILAALLCALIC LG+ +V RC     L       
Sbjct: 18  DANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCV----LRCTRRFT 77

Query: 69  ASTRPPPPPAS-NKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLPQCG 128
            +  P    A+  KG+KK+ L+ +P  +++ E   + ++C ICL +FV G+ +RVLP+C 
Sbjct: 78  PNEDPVDTNANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCN 137

Query: 129 HGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNG 168
           HGFHV CIDTW  SHSSCP+CRQ L+  Q       PA+ S  G
Sbjct: 138 HGFHVKCIDTWLLSHSSCPTCRQSLLEHQT------PANGSRRG 171

The following BLAST results are available for this feature:

BLAST of Csor.00g139250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM69	6.4e-54	57.81	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q8LC69	9.3e-53	58.89	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
Q9ZT49	2.4e-37	45.55	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
O22755	2.3e-35	56.74	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9FLC6	1.9e-26	43.29	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]

BLAST of Csor.00g139250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608649.1	2.55e-131	100.00	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022941514.1	9.97e-129	98.92	RING-H2 finger protein ATL80-like [Cucurbita moschata]	[more]
XP_023523429.1	9.97e-129	98.92	RING-H2 finger protein ATL8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982152.1	2.27e-127	98.92	RING-H2 finger protein ATL80 [Cucurbita maxima]	[more]
XP_004145558.1	1.36e-119	92.47	RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein C...	[more]

BLAST of Csor.00g139250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNK0	4.83e-129	98.92	RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111446793 ...	[more]
A0A6J1IVW2	1.10e-127	98.92	RING-H2 finger protein ATL80 OS=Cucurbita maxima OX=3661 GN=LOC111481072 PE=4 SV...	[more]
A0A0A0L5Y2	6.56e-120	92.47	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 P...	[more]
A0A5A7VGL3	1.88e-119	92.47	RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BWC1	1.88e-119	92.47	RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1	[more]

BLAST of Csor.00g139250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20823.1	4.6e-55	57.81	RING/U-box superfamily protein	[more]
AT1G76410.1	6.6e-54	58.89	RING/U-box superfamily protein	[more]
AT4G35480.1	1.7e-38	45.55	RING-H2 finger A3B	[more]
AT2G17450.1	1.6e-36	56.74	RING-H2 finger A3A	[more]
AT5G05280.1	1.4e-27	43.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 103..144 e-value: 1.1E-7 score: 41.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..145 e-value: 1.9E-14 score: 53.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..145 score: 12.430266
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..149 e-value: 8.5E-22 score: 78.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..186
None	No IPR available	PANTHER	PTHR45798:SF59	RING-H2 FINGER PROTEIN ATL8	coord: 2..178
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 2..178
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 102..145 e-value: 5.1561E-17 score: 69.2529
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 83..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g139250.m01	Csor.00g139250.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane