Csor.00g137940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g137940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr12: 1133279 .. 1133993 (-)
RNA-Seq Expression	Csor.00g137940
Synteny	Csor.00g137940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCCACTCATCCAAGAAGCTTCTGGATTCCCTTCTCTGTTCCACCAACGATTCAAATCATCTGTGTGTTTGGTTTATGCAAGAAACAAAATTCAGCTGGAAACCTCGTCAAGAAGTTTGTACCTTCTCACCTTGTTCCGGAAAATCACCGGCCGTTGGATTCCACTCCGGTGAGAAATCTCCTCCGATCTCGTCCGCCGGAGATTGTCCTCCACGGCGATTGGTTTTCTCCGAGGCGGCGGCGGCGGCGGTGGTTGTGGACGTTCAGAAGCTTCCGGCGACCTCTGTTTTTTAGATGGGTCTGGTTTGTAGGGGTAGAAAAGTGCGAATTTGATCCTTGTTTCGGGGGTTTTTGATCGAGGAGTGATCATCTCGAGTGGTTAAGGAAGAAGAATTGGAAGAATTTGGGGATTTGGCTTTGGATTCCTCCTTTTGAGTTAGACACCAATTGCATATTGTGTAACAATCGGCTTTTGGGTACAAATTGCTGCAGTACCTGAGAAGAACAGCAAGAACAAGAAATGGGTATTAAAATCATGAACCCAATTAAGAAGAAACACAAAGAATTTGAAGGAAATTGCCTGTGTTGGGATCTGAATTGGCAGATTTTGCACCGGAAAAGCTCGTCGGAGAAGCCGAAATCTCCGCACATGCAGCACTCTGGTTCCGACGGCGAACTGGCGGGTGCTGCTCCGGTTGATGTCATCTAG

mRNA sequence

ATGCTCTTCCACTCATCCAAGAAGCTTCTGGATTCCCTTCTCTGTTCCACCAACGATTCAAATCATCTGTGTGTTTGGTTTATGCAAGAAACAAAATTCAGCTGGAAACCTCGTCAAGAAGTTTGTACCTTCTCACCTTGTTCCGGAAAATCACCGGCCGTTGGATTCCACTCCGGTGAGAAATCTCCTCCGATCTCGTCCGCCGGAGATTGTCCTCCACGGCGATTGGTTTTCTCCGAGGCGGCGGCGGCGGCGGTGGTTGTGGACACACCAATTGCATATTGTGTAACAATCGGCTTTTGGGTACAAATTGCTGCAGTACCTGAGAAGAACAGCAAGAACAAGAAATGGATTTTGCACCGGAAAAGCTCGTCGGAGAAGCCGAAATCTCCGCACATGCAGCACTCTGGTTCCGACGGCGAACTGGCGGGTGCTGCTCCGGTTGATGTCATCTAG

Coding sequence (CDS)

ATGCTCTTCCACTCATCCAAGAAGCTTCTGGATTCCCTTCTCTGTTCCACCAACGATTCAAATCATCTGTGTGTTTGGTTTATGCAAGAAACAAAATTCAGCTGGAAACCTCGTCAAGAAGTTTGTACCTTCTCACCTTGTTCCGGAAAATCACCGGCCGTTGGATTCCACTCCGGTGAGAAATCTCCTCCGATCTCGTCCGCCGGAGATTGTCCTCCACGGCGATTGGTTTTCTCCGAGGCGGCGGCGGCGGCGGTGGTTGTGGACACACCAATTGCATATTGTGTAACAATCGGCTTTTGGGTACAAATTGCTGCAGTACCTGAGAAGAACAGCAAGAACAAGAAATGGATTTTGCACCGGAAAAGCTCGTCGGAGAAGCCGAAATCTCCGCACATGCAGCACTCTGGTTCCGACGGCGAACTGGCGGGTGCTGCTCCGGTTGATGTCATCTAG

Protein sequence

MLFHSSKKLLDSLLCSTNDSNHLCVWFMQETKFSWKPRQEVCTFSPCSGKSPAVGFHSGEKSPPISSAGDCPPRRLVFSEAAAAAVVVDTPIAYCVTIGFWVQIAAVPEKNSKNKKWILHRKSSSEKPKSPHMQHSGSDGELAGAAPVDVI

Homology

[Close]

BLAST of Csor.00g137940 vs. NCBI nr
Match: KAG6585356.1 (hypothetical protein SDJN03_18089, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312 bits (799), Expect = 2.60e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MLFHSSKKLLDSLLCSTNDSNHLCVWFMQETKFSWKPRQEVCTFSPCSGKSPAVGFHSGE 60
           MLFHSSKKLLDSLLCSTNDSNHLCVWFMQETKFSWKPRQEVCTFSPCSGKSPAVGFHSGE
Sbjct: 1   MLFHSSKKLLDSLLCSTNDSNHLCVWFMQETKFSWKPRQEVCTFSPCSGKSPAVGFHSGE 60

Query: 61  KSPPISSAGDCPPRRLVFSEAAAAAVVVDTPIAYCVTIGFWVQIAAVPEKNSKNKKWILH 120
           KSPPISSAGDCPPRRLVFSEAAAAAVVVDTPIAYCVTIGFWVQIAAVPEKNSKNKKWILH
Sbjct: 61  KSPPISSAGDCPPRRLVFSEAAAAAVVVDTPIAYCVTIGFWVQIAAVPEKNSKNKKWILH 120

Query: 121 RKSSSEKPKSPHMQHSGSDGELAGAAPVDVI 151
           RKSSSEKPKSPHMQHSGSDGELAGAAPVDVI
Sbjct: 121 RKSSSEKPKSPHMQHSGSDGELAGAAPVDVI 151

The following BLAST results are available for this feature:

BLAST of Csor.00g137940 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g137940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585356.1	2.60e-107	100.00	hypothetical protein SDJN03_18089, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g137940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g137940 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g137940.m01	Csor.00g137940.m01	mRNA