Csor.00g137880 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g137880
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	CHCH domain-containing protein
Location	Csor_Chr12: 1073285 .. 1075171 (-)
RNA-Seq Expression	Csor.00g137880
Synteny	Csor.00g137880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTCGGAGCTCTGGAGGTCAGTATTCCGCCGCTTTCTCCTTCATCTCTTCTTATGCCACTTATCATTTCTGCGTTCAGATGATTATACTCTCCCAGATTCATTTTTCCTTTTTTCTTTACCTCCTTTTGTGTATAACAGTTGGTTGGATTTTTGGCCAAGAGAAATTTTCGTTGATGTATCTGATTTGAAAACACGACTGTCAACATTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTGTGTGGCAAAACTAGGGTTTGGAGGATTTGTATTCTTTATGTTTTGAAAATTCATAGAATAGCGATGAATATTTGAGCTGTGTTATTTGTTAGAGCTTACTGATGCATGTGGTGGATAGTAAAACATTACTTGTTATTACAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGGTAGAATGCCACGAATTTCATATGATTTTATTCTCATAAGAAATGTTCTATTTTTAAGAACTTTTTTGATGTAGAAATGTTGAGTTTGTCTGGTAGCCATTGTGAGTTTCTGTGTTTTAGAAGGTTTATGTTTATCTTATGTATGCCTGTGGTGGATTGGGTTCTTGGCCGGGCTTCTGTACACCTGTGTTACCGTGTTCGGATTTTGAGTCTTCAGTTTGGAAAGTTAATAACTTGAAACTGGTCTGGAAATTAATTCTTAAACAAAGATCTCGAGAAAAGGTCAATAAGTTGAACCTACCATAGTGAAATTTTATAGCTTGAAAACTCTGGAGTTGGTGGGGTGTGGTAATCCAATGAGGGGTGTTAAGACGAACACGACTCTTCACAATGGTATGATATTGTTCACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGCTTCCCCAAAAGGCCTTATACCAATGGAGAGAGTATTCTTTGTTTATGAACCCATGATCATTCCCTAAATTAGTCGATGTGGAACTTTCATCATCCAACAGGGGGAACCCTCTACATTTGAGCTATATGAAAAATGATAGCTGCACTTGGGTTCGCCTTCCACGCTCAGTTAATGGATCAGTTCTCTTTTTGGGAGGTTTAAGTATTTGAACTATGTTACTGCAGATATTCGTAAGTAGATTGCTAATAATCAATGATATGGATTCATGGTCATTGGCAGTTGAATAGCTGGAGTCTTTGAATGTTGTATTACTCTCAATATGAGTGCAAATAAATATGCTGTTCTTTTGCATATTAAGCCGAATGTTTCCTCATGTTTTTGACAATTTATTCGTAACAATATTGTTTTTTGGTGCTAAAATTGACTTGACTTCTGCAGCTCATTCGGCTCCTTCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTCAAGGTGAGTTTAGAAGCACTTGCACTTTTCCTTGGAGAAATTATTTTAATGCTATCATTACCATTGCTTAAAGTGAGTCTATAATGCTATCAGGTTTGGCATTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGAAACTTGTACCGTTCAATCAAAGGCCTTTGAAGATGTAGGTTCCATGTTCTATCTATTGTGATTTATAATGACTTTCTTTTTGAAATGCTTTGATTAGAAAGCCATTTTGATGATACTCAAGTAACTTCCATTTTCTTTTGTTTTTCGTTTGCAGTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA

mRNA sequence

ATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCGGCTCCTTCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTCAAGGTTTGGCATTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGAAACTTGTACCGTTCAATCAAAGGCCTTTGAAGATTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA

Coding sequence (CDS)

ATGCCTCGTCGGAGCTCTGGAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCGGCTCCTTCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTCAAGGTTTGGCATTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGAAACTTGTACCGTTCAATCAAAGGCCTTTGAAGATTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA

Protein sequence

MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

Homology

[Close]

BLAST of Csor.00g137880 vs. NCBI nr
Match: KAG6585350.1 (hypothetical protein SDJN03_18083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279 bits (714), Expect = 1.31e-94
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. NCBI nr
Match: KAG7020260.1 (hypothetical protein SDJN02_16943, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278 bits (711), Expect = 3.77e-94
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIA+GLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAEGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. NCBI nr
Match: XP_022951313.1 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 276 bits (707), Expect = 1.53e-93
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS TCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. NCBI nr
Match: XP_023001881.1 (uncharacterized protein C6C3.02c-like [Cucurbita maxima])

HSP 1 Score: 274 bits (701), Expect = 1.26e-92
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAP PAPVQGGGGGSMLGGLGATIAQGLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPPPAPVQGGGGGSMLGGLGATIAQGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHENVDSSSS TPIANNPGGSETCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSATPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. NCBI nr
Match: XP_023537001.1 (uncharacterized protein C6C3.02c-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537002.1 uncharacterized protein C6C3.02c-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274 bits (700), Expect = 1.79e-92
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLG LGATIAQGLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGELGATIAQGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHE VDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. ExPASy TrEMBL
Match: A0A6J1GHD7 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454184 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 7.43e-94
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS TCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. ExPASy TrEMBL
Match: A0A6J1KJW6 (uncharacterized protein C6C3.02c-like OS=Cucurbita maxima OX=3661 GN=LOC111495933 PE=4 SV=1)

HSP 1 Score: 274 bits (701), Expect = 6.11e-93
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAPVRNPPPPAHSAP PAPVQGGGGGSMLGGLGATIAQGLAFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPPPAPVQGGGGGSMLGGLGATIAQGLAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120
           GSAVAHRAVDAVMGPRVIQHENVDSSSS TPIANNPGGSETCTVQSKAFEDCLNHYGNDI
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSATPIANNPGGSETCTVQSKAFEDCLNHYGNDI 120

Query: 121 GKCQFYLDMLKECRRGSGSVLGA 143
           GKCQFYLDMLKECRRGSGSVLGA
Sbjct: 121 GKCQFYLDMLKECRRGSGSVLGA 143

[Close]

BLAST of Csor.00g137880 vs. ExPASy TrEMBL
Match: A0A6J1HDK4 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462950 PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 9.48e-77
Identity = 122/145 (84.14%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAP RN P PAHSAP PAPVQGGGGGSMLGGLGATIAQG+AFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTPAPAHSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGGSETCTVQSKAFEDCLNHYGN 120
           GSAVAHRAVDAVMGPRVIQHE VDSS  SS   +A+NPGGS+ C VQSK+F+DCLNHYG+
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVASNPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DIGKCQFYLDMLKECRRGSGSVLGA 143
           DI KCQFYLDML+ECR+ SGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Csor.00g137880 vs. ExPASy TrEMBL
Match: A0A0A0LNY2 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 SV=1)

HSP 1 Score: 231 bits (590), Expect = 5.30e-76
Identity = 120/144 (83.33%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAP+RNPP PA  AP PAPVQGGGGGSMLGGLGATIAQG+AFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPLRNPPAPASPAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGSETCTVQSKAFEDCLNHYGND 120
           GSAVAHRAVDAVMGPR IQHE VDSS+S  P +A+N GGS+ C VQSK+F+DCLNHYG+D
Sbjct: 61  GSAVAHRAVDAVMGPRTIQHETVDSSASSAPSVASNSGGSDACNVQSKSFQDCLNHYGSD 120

Query: 121 IGKCQFYLDMLKECRRGSGSVLGA 143
           I KCQFYLDML+ECRR SGSVLGA
Sbjct: 121 ISKCQFYLDMLQECRRSSGSVLGA 144

[Close]

BLAST of Csor.00g137880 vs. ExPASy TrEMBL
Match: A0A6J1K966 (coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492237 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 4.50e-75
Identity = 121/145 (83.45%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQGGGGGSMLGGLGATIAQGLAFGT 60
           MPRRSSGGRSASRPAPRAP RN P PA+SAP PAPVQGGGGGSMLGGLGATIAQG+AFGT
Sbjct: 1   MPRRSSGGRSASRPAPRAPPRNTPAPANSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGT 60

Query: 61  GSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGGSETCTVQSKAFEDCLNHYGN 120
           GSAVAHRAVDAVMGPRVIQHE VDSS  SS   +A NPGGS+ C VQSK+F+DCLNHYG+
Sbjct: 61  GSAVAHRAVDAVMGPRVIQHETVDSSTPSSAPSVAINPGGSDACNVQSKSFQDCLNHYGS 120

Query: 121 DIGKCQFYLDMLKECRRGSGSVLGA 143
           DI KCQFYLDML+ECR+ SGSVLGA
Sbjct: 121 DISKCQFYLDMLQECRKSSGSVLGA 145

[Close]

BLAST of Csor.00g137880 vs. TAIR 10
Match: AT5G64400.1 (CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-42
Identity = 89/144 (61.81%), Postives = 107/144 (74.31%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQ-GGGGGSMLGGLGATIAQGLAFG 60
           M RRSSGGRSA RP P A     P P H AP PAP Q  GGGG M  G+G+TIAQG+AFG
Sbjct: 1   MGRRSSGGRSAPRPRPAAARSPAPQPVHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGND 120
           TGSAVAHRAVD+VMGPR IQHE V+++S+    A +   S TC + +KAF+DC+  YG++
Sbjct: 61  TGSAVAHRAVDSVMGPRTIQHEAVEAASASAAPAGSAMLSSTCDIHAKAFQDCIGSYGSE 120

Query: 121 IGKCQFYLDMLKECRRGSGSVLGA 144
           I KCQFY+DML ECR+ SGSV+GA
Sbjct: 121 ISKCQFYMDMLSECRKNSGSVIGA 144

[Close]

BLAST of Csor.00g137880 vs. TAIR 10
Match: AT5G09570.1 (Cox19-like CHCH family protein )

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-34
Identity = 79/144 (54.86%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPA-HSAPSPAPVQGGGGGSMLGGLGATIAQGLAFG 60
           MPR SSGGRS+ RP+  A  R+PPP + + AP PA  Q   GGS LG +GA+I +GLA+G
Sbjct: 1   MPRGSSGGRSSYRPSRPAAARSPPPQSVNRAPPPATAQPSSGGSFLGNIGASITEGLAWG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFEDCLNHYGND 120
           TG+A  HR VD+VMGPR  +HE V    S  P A N      C + SKAF+DC+NH+G+D
Sbjct: 61  TGTAFGHRVVDSVMGPRTFKHETV---VSQVPSAANT--MTACDIHSKAFQDCVNHFGSD 120

Query: 121 IGKCQFYLDMLKECRRGSGSVLGA 144
           I KCQFY+DML EC++ SGSV+ A
Sbjct: 121 ISKCQFYMDMLSECKKNSGSVVAA 139

[Close]

BLAST of Csor.00g137880 vs. TAIR 10
Match: AT5G64400.2 (BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 127 Blast hits to 125 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 16; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). )

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-26
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MPRRSSGGRSASRPAPRAPVRNPPPPAHSAPSPAPVQ-GGGGGSMLGGLGATIAQGLAFG 60
           M RRSSGGRSA RP P A     P P H AP PAP Q  GGGG M  G+G+TIAQG+AFG
Sbjct: 1   MGRRSSGGRSAPRPRPAAARSPAPQPVHRAPPPAPAQASGGGGGMFSGIGSTIAQGMAFG 60

Query: 61  TGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSETCTVQSKAFED 112
           TGSAVAHRAVD+VMGPR IQHE V+++S+    A +   S TC + +KAF+D
Sbjct: 61  TGSAVAHRAVDSVMGPRTIQHEAVEAASASAAPAGSAMLSSTCDIHAKAFQD 112

The following BLAST results are available for this feature:

BLAST of Csor.00g137880 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g137880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585350.1	1.31e-94	100.00	hypothetical protein SDJN03_18083, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7020260.1	3.77e-94	99.30	hypothetical protein SDJN02_16943, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022951313.1	1.53e-93	99.30	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]
XP_023001881.1	1.26e-92	98.60	uncharacterized protein C6C3.02c-like [Cucurbita maxima]	[more]
XP_023537001.1	1.79e-92	98.60	uncharacterized protein C6C3.02c-like isoform X1 [Cucurbita pepo subsp. pepo] >X...	[more]

BLAST of Csor.00g137880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GHD7	7.43e-94	99.30	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]
A0A6J1KJW6	6.11e-93	98.60	uncharacterized protein C6C3.02c-like OS=Cucurbita maxima OX=3661 GN=LOC11149593...	[more]
A0A6J1HDK4	9.48e-77	84.14	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial ...	[more]
A0A0A0LNY2	5.30e-76	83.33	CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G370390 PE=4 S...	[more]
A0A6J1K966	4.50e-75	83.45	coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-...	[more]

BLAST of Csor.00g137880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64400.1	5.8e-42	61.81	CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana...	[more]
AT5G09570.1	2.0e-34	54.86	Cox19-like CHCH family protein	[more]
AT5G64400.2	2.0e-26	60.71	BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 102..135 e-value: 2.3E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..32
None	No IPR available	PANTHER	PTHR13523	COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77	coord: 1..137
None	No IPR available	PANTHER	PTHR13523:SF16	SUBFAMILY NOT NAMED	coord: 1..137
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 100..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g137880.m01	Csor.00g137880.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007005	mitochondrion organization
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005634	nucleus