Csor.00g137290 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g137290
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	serine/arginine-rich splicing factor SC35-like
Location	Csor_Chr12: 723788 .. 726743 (-)
RNA-Seq Expression	Csor.00g137290
Synteny	Csor.00g137290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGTATCTCCGATCCCTAATTTTCTCTTATCTTCTTTCTTTATCTTCAATCTCTTACCATTTCTCTGTTTTTCAGGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGTTTCTTTCTCCCTTTTGCGTTTAATCTTTTCTTTTGATGAATTTGAGTGCGTAATTGGTTGGTTTTGATTTCTGTTAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGGTTAGCTTCAGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATGTGAGTTTACTATAAATATTTTAAACGCTTTTGGATGTAATTTGTTACACTTCACAGCTGCACAAGAACGTGTTTCTTGATTCTTGAATTTTGGTTTGTATCAGTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGTGAGAGTTCTAGTCTAAATGCATCTGAACTTGGAGTTCGAATCAGAGCTCTGGTGAAGAAATTTATATTTTCTCGAGGTAATTATCCTCGTTTACTCTGCGATTCAAACGAAAAATTTCGATGTCCCCTTCCACATAGTCATGTAGAGTGAAGGAGGTAATAATTTTTATCTGGTTGTGAATGCAATTTCTTTAGTAGAATTGGTGCATATGGTACACCTAGAATTAGCTACGTGTGTTAATCTAGTTAATGGTAAAGTTTAACACAATCATTAAGGACACAAGTTCTTGACTTCACAAAAAGTGTGGATGATTGAAACAGCCTTATGCTTGAAGAAGTATATTGAAAATCATGAATCGTAATATGAAACTACCTTAAATCTGTTACAAACGTGTATTTGGTTTAACTGATTATGACAATTTTATGGACAAGGGACGAAAGGTTATAAGGCTCGTCTTCAATTGAGTTTCTTATCATTACAGGCAGTTGATTGTGATCTCATTATTTCCAGCTGGTTATTCTACCTTCTCTTATGGATTGCAAAATATTTCAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGAGAGATATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGGTATATGAATACTTTCTTTCTTTTATTGCTTTTAAGGGATATTGTATTCAGGCGTTCTAAGGTTCGCATGGGTTCTAGTTACCATCCTTTAATTGGGTTGCAACACTTACTCTAGTAGTTGTGAAATAGGAGTATTTGAATTCTAGTTATTTACTTGCGTTTGGATGGTCATGGGGGGATGGGTGGAACCATAGAGGTGTTCTTGAGAGGGGTATGTTTGCCAAACATTACATATTTTTTAGAACATGGCTTATGAAAATCACCGTGCCTTTGAAATATTCTCCATAAGTCCATAATTCTAATAAGAGAACGAAAAATAGACCTCTTTGAAGAACACACTCAAGAGAAACAAGCAAAAGCACAGTTATTCAGCCATCTTATCCTGAACTTCCGTTTGGAAGATGGAAAAAACTGTTATCTGAAAATAGCTTTTGAACAGCTCCTCTTAACACATGCACAATCAATACACCAACAGTGATCTAGTAATACAGTGGAAAATATTCCAGAGATCGATCCATAAGGGGAAAAAAAAAAAAAAAAAAAAAAAACTCTCTTAGACCCAAAAAACTTAGATGTAGCAGATTTTTAGGTTATAAAAGGTTCAAATATGAATGAGACTATCTGAAATTTCCACATATTGTAAACTCGTTCCGTGCTAAGAACATGCTCCTATTTCACTTCGGTTGGTTAGATGAAAAGAAGTGAAATAATCCAGAGAAACTTGAGAAATCAACCAACATGTATTGCTGAATCAAAGGAGTTACAACATAGGGTTCACTATGTGTCAAACCAAAGATACCTAGTCATTTATGGTGGTGAAGAACAAGAACAAAACCCAACGGAGAAATTGATCATGCATGCATTGAGAGTGATTTTTGTGTGTTATCGCTATGAATTTTAGCGTTGGCAGCGCACAGTTGACTAATTCTGCTCACATATTTACAAATATCTTGTTAGAGCTTTAATATTTTATAAAGAATTTTTCCATTGTAACGTCTCACACTCCAAAATCAATGATCTAGCATTACTAAGAGTTTTATTTCAAGTTTCTTGAGCATATCCAAACGCACTTTTCATTTAATTTTCTGGACATCTCACACTGCCCAAACCATGCAAGGTCCTCATCCTTCATTCACTGCAATTCTTATAATTCTTTTCGGTCTGCACTCTAATTGGAAATGACTTTATACTGAAGCATGTCACCCACCCGACATTCCCCTGATACTTGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCACCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGTAAGCTAGCTAGTCTGCCATTCTTATTGCCAATGATTCTTTTAAAAAAAAGTGCTGGTCTGTCTAGTGATATCTATAATTTGTGCCTGCAGGAGTGA

mRNA sequence

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTTGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCACCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGA

Coding sequence (CDS)

ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTGACAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTTGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCACCTCAGAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHNRRRERDDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

Homology

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BLAST of Csor.00g137290 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.5e-57
Identity = 148/256 (57.81%), Postives = 164/256 (64.06%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS-- 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E      R RS  
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRPRHRDDYRDRDYRRRSHNR---RRERDDER-RSA 180
                               RSRSPR R RDDYR++DYR+RS +R   RRER +E+ R  
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 SRSDRSMSPTRHSPDTWR-----------------SISPRRTPARGRSDDEHSPQRENGS 214
            R  RS S    SPD  R                 S SP R   R  S  + SP RE   
Sbjct: 181 RRRTRSRSA---SPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVS- 240

[Close]

BLAST of Csor.00g137290 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.7e-24
Identity = 95/222 (42.79%), Postives = 122/222 (54.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G       S   GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGR-RSR 122

Query: 124 SPRPRHRDDYRDRDYRRRSHNRRRERDDER---RSASRSDRSMSPTRHSPDTWRSISPRR 183
           SPR R R   R R   R     R  R   R   RS SRS       R S     S+S  R
Sbjct: 123 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR 182

Query: 184 TPARGRSDDEHSP---QRENGSLDDKPVDSRSPSPAKSDADE 218
           + +R RS     P   +RE+ S       SRS SP KS  +E
Sbjct: 183 SRSRSRSRSRSPPPTSKRESNS------RSRSKSPPKSPEEE 216

[Close]

BLAST of Csor.00g137290 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.1e-23
Identity = 92/219 (42.01%), Postives = 118/219 (53.88%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G           GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSR 122

Query: 124 SPRPRHRDDYRDRDYRRRSHNRRRERDDER---RSASRSDRSMSPTRHSPDTWRSISPRR 183
           SPR R R   R R   R     R  R   R   RS SRS       R S     S+S  R
Sbjct: 123 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR 182

Query: 184 TPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 218
           + +R RS     P     S  +    SRS SP KS  +E
Sbjct: 183 SRSRSRSRSRSPPP---ASKRESKSRSRSKSPPKSPEEE 216

[Close]

BLAST of Csor.00g137290 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 94/222 (42.34%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G           GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSR 122

Query: 124 SPRPRHRDDYRDRDYRRRSHNRRRERDDER---RSASRSDRSMSPTRHSPDTWRSISPRR 183
           SPR R R   R R   R     R  R   R   RS SRS       R S     S+S  R
Sbjct: 123 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR 182

Query: 184 TPARGRSDDEHSP---QRENGSLDDKPVDSRSPSPAKSDADE 218
           + +R RS     P   +RE+ S       SRS SP KS  +E
Sbjct: 183 SRSRSRSRSRSPPPVSKRESKS------RSRSKSPPKSPEEE 216

[Close]

BLAST of Csor.00g137290 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-23
Identity = 94/222 (42.34%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSR 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G           GR RSR
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGR-RSR 122

Query: 124 SPRPRHRDDYRDRDYRRRSHNRRRERDDER---RSASRSDRSMSPTRHSPDTWRSISPRR 183
           SPR R R   R R   R     R  R   R   RS SRS       R S     S+S  R
Sbjct: 123 SPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSR 182

Query: 184 TPARGRSDDEHSP---QRENGSLDDKPVDSRSPSPAKSDADE 218
           + +R RS     P   +RE+ S       SRS SP KS  +E
Sbjct: 183 SRSRSRSRSRSPPPVSKRESKS------RSRSKSPPKSPEEE 216

[Close]

BLAST of Csor.00g137290 vs. NCBI nr
Match: KAG6585291.1 (Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410 bits (1053), Expect = 7.33e-144
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNRRRERDDERRSASRSDRSMSPTRHSPDTWRSISPRRTP 180
           RSPRPRHRDDYRDRDYRRRSHNRRRERDDERRSASRSDRSMSPTRHSPDTWRSISPRRTP
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSHNRRRERDDERRSASRSDRSMSPTRHSPDTWRSISPRRTP 180

Query: 181 ARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 217
           ARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Sbjct: 181 ARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE 217

[Close]

BLAST of Csor.00g137290 vs. NCBI nr
Match: XP_022952013.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 379 bits (974), Expect = 2.60e-131
Identity = 212/250 (84.80%), Postives = 215/250 (86.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 217
           DDERRSASRSDRSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRS
Sbjct: 181 DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVNSRS 240

[Close]

BLAST of Csor.00g137290 vs. NCBI nr
Match: XP_023002672.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 378 bits (970), Expect = 1.06e-130
Identity = 211/250 (84.40%), Postives = 214/250 (85.60%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSEREHHRSRSRSASPDRNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 217
           DDER SASRS+RSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRS
Sbjct: 181 DDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVDSRS 240

[Close]

BLAST of Csor.00g137290 vs. NCBI nr
Match: XP_022952012.1 (serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 378 bits (970), Expect = 1.10e-130
Identity = 211/249 (84.74%), Postives = 214/249 (85.94%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 216
           DDERRSASRSDRSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRS
Sbjct: 181 DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVNSRS 240

[Close]

BLAST of Csor.00g137290 vs. NCBI nr
Match: XP_023538162.1 (serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377 bits (968), Expect = 2.14e-130
Identity = 211/250 (84.40%), Postives = 214/250 (85.60%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSS TRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSMTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDD+RDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDHRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSCSASPDRNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 217
           DDERRSASRSDRSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRS
Sbjct: 181 DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVDSRS 240

[Close]

BLAST of Csor.00g137290 vs. ExPASy TrEMBL
Match: A0A6J1GJA8 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 379 bits (974), Expect = 1.26e-131
Identity = 212/250 (84.80%), Postives = 215/250 (86.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 217
           DDERRSASRSDRSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRS
Sbjct: 181 DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVNSRS 240

[Close]

BLAST of Csor.00g137290 vs. ExPASy TrEMBL
Match: A0A6J1KK62 (serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 5.13e-131
Identity = 211/250 (84.40%), Postives = 214/250 (85.60%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSEREHHRSRSRSASPDRNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 217
           DDER SASRS+RSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRS
Sbjct: 181 DDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVDSRS 240

[Close]

BLAST of Csor.00g137290 vs. ExPASy TrEMBL
Match: A0A6J1GJ79 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454726 PE=4 SV=1)

HSP 1 Score: 378 bits (970), Expect = 5.31e-131
Identity = 211/249 (84.74%), Postives = 214/249 (85.94%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSERERHRSRSRSASPDCNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 216
           DDERRSASRSDRSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRS
Sbjct: 181 DDERRSASRSDRSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVNSRS 240

[Close]

BLAST of Csor.00g137290 vs. ExPASy TrEMBL
Match: A0A6J1KLY6 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496458 PE=4 SV=1)

HSP 1 Score: 376 bits (966), Expect = 2.16e-130
Identity = 210/249 (84.34%), Postives = 213/249 (85.54%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNR---------------------------------RRER 180
           RSPRPRHRDDYRDRDYRRRS +R                                 RRER
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERYDRDRPHRSEREHHRSRSRSASPDRNKDRRRER 180

Query: 181 DDERRSASRSDRSMSPTRHSPDTWRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRS 216
           DDER SASRS+RSMSPTRHSPDT RSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRS
Sbjct: 181 DDERHSASRSERSMSPTRHSPDTRRSISPRRTPSRGRSDDEHSPQRENGSLDDKPVDSRS 240

[Close]

BLAST of Csor.00g137290 vs. ExPASy TrEMBL
Match: A0A6J1HDE4 (serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462587 PE=4 SV=1)

HSP 1 Score: 354 bits (908), Expect = 1.47e-121
Identity = 204/252 (80.95%), Postives = 208/252 (82.54%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRS 120
           FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSS K RGRSRS
Sbjct: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSS-KARGRSRS 120

Query: 121 RSPRPRHRDDYRDRDYRRRSHNRRRERDD------------------------------- 180
           RSPRPRHRDDYRDRDYRRRS +R RER D                               
Sbjct: 121 RSPRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRLRGR 180

Query: 181 ---ERRSASRSDRSMSPTRHSPDTWRSISPRRTP-ARGRSDDEHSPQRENGSLDDKPVDS 217
              ERRSAS SDRSMSP RHSPDT RSISPRRTP +RGRSDDEHSP+R+NGS DDKPVDS
Sbjct: 181 DDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDDEHSPRRDNGSPDDKPVDS 240

[Close]

BLAST of Csor.00g137290 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-58
Identity = 148/256 (57.81%), Postives = 164/256 (64.06%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS-- 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E      R RS  
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRPRHRDDYRDRDYRRRSHNR---RRERDDER-RSA 180
                               RSRSPR R RDDYR++DYR+RS +R   RRER +E+ R  
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 SRSDRSMSPTRHSPDTWR-----------------SISPRRTPARGRSDDEHSPQRENGS 214
            R  RS S    SPD  R                 S SP R   R  S  + SP RE   
Sbjct: 181 RRRTRSRSA---SPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVS- 240

[Close]

BLAST of Csor.00g137290 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-58
Identity = 148/256 (57.81%), Postives = 164/256 (64.06%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS-- 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E      R RS  
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRPRHRDDYRDRDYRRRSHNR---RRERDDER-RSA 180
                               RSRSPR R RDDYR++DYR+RS +R   RRER +E+ R  
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 SRSDRSMSPTRHSPDTWR-----------------SISPRRTPARGRSDDEHSPQRENGS 214
            R  RS S    SPD  R                 S SP R   R  S  + SP RE   
Sbjct: 181 RRRTRSRSA---SPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVS- 240

[Close]

BLAST of Csor.00g137290 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-13
Identity = 93/247 (37.65%), Postives = 117/247 (47.37%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGR--------SRSRSPRPRH- 136
           +DG +L GRE+ V FA+   N +K  + +  E    + R R        SRSRSP PR  
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRG 156

Query: 137 RDDYRDRDY----RRRSHNR----RRERDDERRSASRS-------DRSMSPTRH-----S 196
           R   R  DY     RR H R    R ER D RRS SRS        RS++P R      S
Sbjct: 157 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 216

Query: 197 PDTWRSI--SPRR----TPARGRSDD-----------EHSPQRENGSLDDKPVDSRSPSP 218
           P   RSI  SPRR    +P R RS               SP+R   S   +P  SRS SP
Sbjct: 217 PSPRRSISRSPRRSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRSQSP 276

[Close]

BLAST of Csor.00g137290 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-12
Identity = 73/189 (38.62%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGR--------SRSRSPRPRH- 136
           +DG +L GRE+ V FA+   N +K  + +  E    + R R        SRSRSP PR  
Sbjct: 97  MDGYLLLGRELTVVFAE--ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRG 156

Query: 137 RDDYRDRDY----RRRSHNR----RRERDDERRSASRS-------DRSMSPTRHSPDTWR 182
           R   R  DY     RR H R    R ER D RRS SRS        RS++P R      R
Sbjct: 157 RSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKS---R 216

[Close]

BLAST of Csor.00g137290 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 68.2 bits (165), Expect = 9.5e-12
Identity = 56/176 (31.82%), Postives = 93/176 (52.84%), Query Frame = 0


Query: 18  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKL 77
           LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYR 137
           + +++ GREI + FA+      +  +     S       R+  RSPR R+R   R R   
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPP 168

Query: 138 RRSHNRRRERDDERRSASRSDRSM--SPTRHSPDTWRS---ISPRR----TPARGR 185
           RR     + R+D+  S  R  RS+  SP   +   ++S    SPR     TP R R
Sbjct: 169 RRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSR 224

The following BLAST results are available for this feature:

BLAST of Csor.00g137290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	2.5e-57	57.81	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	4.7e-24	42.79	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q06A98	3.1e-23	42.01	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3MHR5	4.0e-23	42.34	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	4.0e-23	42.34	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of Csor.00g137290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585291.1	7.33e-144	100.00	Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp...	[more]
XP_022952013.1	2.60e-131	84.80	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata]	[more]
XP_023002672.1	1.06e-130	84.40	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima]	[more]
XP_022952012.1	1.10e-130	84.74	serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata]	[more]
XP_023538162.1	2.14e-130	84.40	serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita pepo subsp....	[more]

BLAST of Csor.00g137290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJA8	1.26e-131	84.80	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1KK62	5.13e-131	84.40	serine/arginine-rich splicing factor SC35-like isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1GJ79	5.31e-131	84.74	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata ...	[more]
A0A6J1KLY6	2.16e-130	84.34	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1HDE4	1.47e-121	80.95	serine/arginine-rich splicing factor SC35-like isoform X1 OS=Cucurbita moschata ...	[more]

BLAST of Csor.00g137290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	1.8e-58	57.81	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.8e-58	57.81	ortholog of human splicing factor SC35	[more]
AT1G55310.1	1.3e-13	37.65	SC35-like splicing factor 33	[more]
AT1G55310.2	4.3e-12	38.62	SC35-like splicing factor 33	[more]
AT5G18810.1	9.5e-12	31.82	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 e-value: 4.8E-21 score: 74.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..104 e-value: 6.6E-28 score: 99.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..217
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..194
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..194
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g137290.m01	Csor.00g137290.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding