Csor.00g136010 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g136010
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptioncytochrome b-c1 complex subunit 8-like
LocationCsor_Chr12: 95657 .. 97066 (+)
RNA-Seq ExpressionCsor.00g136010
SyntenyCsor.00g136010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGCAACCGGTCCGGATGAAGGCTGTGATCTACGCTTTGTCGCCGTTCCAGCAGAAGACCATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCCCTTCTAATTACCCCCGTCGTCGGCACCTACACGTAATTTTTCATCTCCTTGTTCCTTTTCATATTTTTCTTATTTTTGGAATTCCGAATTTAGGGTTTGCTTCTTGTTGATTGGTTTTTTCCCTTCATGGTTCAATCTAATATCAATCTAAAAAAAAAAAAAAAAAAAAAACAAAAACAAGTCTTCAATTGTTTCTCAATAAGCTTGGTAGGTTATTCTTTTCGTAACACCTGGTCGGGTCTAATTTAGATGAGATATCTCTTAATCAGATTCGGAGTGGAAATACACAATTCCACCGACGTGGAATTCTTGTAATCATTTGGTCTTCTCTGGACTTAGCGTGTTCAATATTTCCCTCAAAGCTATCATCATTTTAATATTCATACGAAATTTTCTACTGGAACTGATCGCGAACAGTTGACAGGGTGCATCTTATTGATTGATTGTTTCATCTATTGGAATGGAATAAAAAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGGGTGGTAGGCTAACCCGTGATGATGTTATTGTCCTGAACTGCAAGTGTTCGCTTCTGTTTAGAAAAGGCATTGCCTCACTTGATTGAATTGTTCCCAGGTCATATCAATCAGATTTGCAATTACTCGTCCACCATCTGTGTGTGTTATAATAACCTTCAATTACTTTCGATCTATTTTTAGTTCATGCTATTTTATCATTGAAGAGATAGGTTGGTTCTTTTGTGCACAGGGTGGAACTTTTATTTTTTGCTACATATTAAAGAATTGAGATTAAGAGGTACCTTCCCCACATGCAAGATTTAGAAATTGGATGCGGGCAAGAGGTTTAAAACTGAGTAAAATCAATTTGGATGATAACTGCTTTCTATTTTCCAAGTGAGAAGTAAGAATGGCATCGTTGTATTTAAGAATGATGAAACGTTGTATTTAAGAATTTTTAGCGCTAGATTGGATGGAACTAAAGTTTCCCTTTTCATCTGAGGTCCGCACCATGCACCAACATACGAAAGATATTATTTTGTTTTAGCTTTGATTTAAGCTTCGTTTGCATATACATGCATAAGATAAATGACTTGTATTAGTTGATTGATTGGTGGAAAATGGGGTCTTGGTGGATGAACATGTGCAAATATATGTTTCACTTGTGAACTTGCTTTGGTTCGATTTAATGTGGACGTCCCTTGCATTGAAGATATCATATCTGCAAATGGATGTAGGTACGCGCAGCAGTTCAAGGAGAATGAAAAGTTATCTCACAGGTACTGA

mRNA sequence

ATGGGGAAGCAACCGGTCCGGATGAAGGCTGTGATCTACGCTTTGTCGCCGTTCCAGCAGAAGACCATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCCCTTCTAATTACCCCCGTCGTCGGCACCTACACGTACGCGCAGCAGTTCAAGGAGAATGAAAAGTTATCTCACAGGTACTGA

Coding sequence (CDS)

ATGGGGAAGCAACCGGTCCGGATGAAGGCTGTGATCTACGCTTTGTCGCCGTTCCAGCAGAAGACCATGTCAGGGTTATGGAACGACTTGACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGTGCCGCCCTTCTAATTACCCCCGTCGTCGGCACCTACACGTACGCGCAGCAGTTCAAGGAGAATGAAAAGTTATCTCACAGGTACTGA

Protein sequence

MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQQFKENEKLSHRY
Homology
BLAST of Csor.00g136010 vs. ExPASy Swiss-Prot
Match: Q9SG91 (Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-28
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWISA LL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QFKENEKLSHRY 73
           FKE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Csor.00g136010 vs. ExPASy Swiss-Prot
Match: Q9FLB7 (Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-27
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWIS  LL+ PVVGTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QFKENEKLSHRY 73
           FKE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Csor.00g136010 vs. ExPASy Swiss-Prot
Match: P46269 (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-27
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YA+SPFQQK M GLW DL GKIHHK+SENWISA LL+ P+VGTY+Y Q
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQ 60

Query: 61 QFKENEKLSHRY 73
           F E EKL HRY
Sbjct: 61 HFLEKEKLEHRY 72

BLAST of Csor.00g136010 vs. NCBI nr
Match: XP_022951208.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023537368.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6585163.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020083.1 hypothetical protein SDJN02_16765 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (382), Expect = 3.24e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          QFKENEKLSHRY
Sbjct: 61 QFKENEKLSHRY 72

BLAST of Csor.00g136010 vs. NCBI nr
Match: XP_022961649.1 (cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cytochrome b-c1 complex subunit 8-like [Cucurbita maxima] >XP_023545652.1 cytochrome b-c1 complex subunit 8-like [Cucurbita pepo subsp. pepo] >KAG6598219.1 Cytochrome b-c1 complex subunit 8-1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029201.1 hypothetical protein SDJN02_07538, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (375), Expect = 3.80e-45
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g136010 vs. NCBI nr
Match: XP_038886592.1 (cytochrome b-c1 complex subunit 8-like [Benincasa hispida])

HSP 1 Score: 144 bits (364), Expect = 1.81e-43
Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQK M+GLWNDL GKIHHKISENWISAALLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDLPGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g136010 vs. NCBI nr
Match: XP_022131282.1 (cytochrome b-c1 complex subunit 8-like [Momordica charantia])

HSP 1 Score: 141 bits (355), Expect = 4.29e-42
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAV+YALSPFQQK M+GLWNDLTGKIHHKISENWISA LL+TPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVVYALSPFQQKIMTGLWNDLTGKIHHKISENWISAVLLVTPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KE EKL+HRY
Sbjct: 61 QYKEKEKLAHRY 72

BLAST of Csor.00g136010 vs. NCBI nr
Match: XP_008444338.1 (PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo] >KAA0061082.1 cytochrome b-c1 complex subunit 8-like [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 4.29e-42
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQK MSGLWNDL+GKIHHKISENWISAALLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KE EKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of Csor.00g136010 vs. ExPASy TrEMBL
Match: A0A6J1KUK4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111496537 PE=3 SV=1)

HSP 1 Score: 151 bits (382), Expect = 1.57e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          QFKENEKLSHRY
Sbjct: 61 QFKENEKLSHRY 72

BLAST of Csor.00g136010 vs. ExPASy TrEMBL
Match: A0A6J1GH36 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111454117 PE=3 SV=1)

HSP 1 Score: 151 bits (382), Expect = 1.57e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          QFKENEKLSHRY
Sbjct: 61 QFKENEKLSHRY 72

BLAST of Csor.00g136010 vs. ExPASy TrEMBL
Match: A0A6J1K5M6 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492502 PE=3 SV=1)

HSP 1 Score: 149 bits (375), Expect = 1.84e-45
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g136010 vs. ExPASy TrEMBL
Match: A0A6J1HEN4 (cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC111462357 PE=3 SV=1)

HSP 1 Score: 149 bits (375), Expect = 1.84e-45
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISA LLITPVVGTYTYAQ
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISATLLITPVVGTYTYAQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KENEKLSHRY
Sbjct: 61 QYKENEKLSHRY 72

BLAST of Csor.00g136010 vs. ExPASy TrEMBL
Match: A0A5A7UYV6 (Cytochrome b-c1 complex subunit 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002220 PE=3 SV=1)

HSP 1 Score: 141 bits (355), Expect = 2.08e-42
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPVRMKAVIYALSPFQQK MSGLWNDL+GKIHHKISENWISAALLITPVVG+YTY Q
Sbjct: 1  MGKQPVRMKAVIYALSPFQQKIMSGLWNDLSGKIHHKISENWISAALLITPVVGSYTYVQ 60

Query: 61 QFKENEKLSHRY 72
          Q+KE EKLSHRY
Sbjct: 61 QYKEKEKLSHRY 72

BLAST of Csor.00g136010 vs. TAIR 10
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-29
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWISA LL+TPVVGTY YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTYWYAQ 60

Query: 61 QFKENEKLSHRY 73
           FKE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

BLAST of Csor.00g136010 vs. TAIR 10
Match: AT5G05370.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 123.2 bits (308), Expect = 8.2e-29
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0

Query: 1  MGKQPVRMKAVIYALSPFQQKTMSGLWNDLTGKIHHKISENWISAALLITPVVGTYTYAQ 60
          MGKQPV++KAV+YALSPFQQK M+GLW DL  KIHHK+SENWIS  LL+ PVVGTY+YAQ
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYSYAQ 60

Query: 61 QFKENEKLSHRY 73
           FKE EKL HR+
Sbjct: 61 YFKEQEKLEHRF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SG911.8e-2877.78Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
Q9FLB71.2e-2775.00Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
P462692.6e-2773.61Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
XP_022951208.13.24e-46100.00cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_023002778.1 cyto... [more]
XP_022961649.13.80e-4597.22cytochrome b-c1 complex subunit 8-like [Cucurbita moschata] >XP_022997627.1 cyto... [more]
XP_038886592.11.81e-4394.44cytochrome b-c1 complex subunit 8-like [Benincasa hispida][more]
XP_022131282.14.29e-4288.89cytochrome b-c1 complex subunit 8-like [Momordica charantia][more]
XP_008444338.14.29e-4291.67PREDICTED: cytochrome b-c1 complex subunit 8-like [Cucumis melo] >KAA0061082.1 c... [more]
Match NameE-valueIdentityDescription
A0A6J1KUK41.57e-46100.00cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114965... [more]
A0A6J1GH361.57e-46100.00cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1K5M61.84e-4597.22cytochrome b-c1 complex subunit 8-like OS=Cucurbita maxima OX=3661 GN=LOC1114925... [more]
A0A6J1HEN41.84e-4597.22cytochrome b-c1 complex subunit 8-like OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A5A7UYV62.08e-4291.67Cytochrome b-c1 complex subunit 8-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
AT3G10860.11.3e-2977.78Cytochrome b-c1 complex, subunit 8 protein [more]
AT5G05370.18.2e-2975.00Cytochrome b-c1 complex, subunit 8 protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890Cyt_b-c1_8coord: 1..72
e-value: 2.7E-35
score: 120.6
IPR020101Cytochrome b-c1 complex subunit 8, plantsPANTHERPTHR34559CYTOCHROME B-C1 COMPLEX SUBUNIT 8coord: 1..72
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyGENE3D1.20.5.210coord: 2..72
e-value: 7.8E-9
score: 37.5
IPR036642Cytochrome b-c1 complex subunit 8 superfamilySUPERFAMILY81508Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 10..65
NoneNo IPR availablePANTHERPTHR34559:SF3CYTOCHROME B-C1 COMPLEX, SUBUNIT 8coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g136010.m01Csor.00g136010.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0070469 respirasome